--- Log opened Mon Jun 11 00:00:37 2012
00:10 < sylph_mako> Does anyone remember the name of that city which didn't appear to be built for humans?
00:10 < Utopiah> Brasilia?
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00:12 < strangewarp> The Chaco Canyon pueblo complexes? Although it was probably a forced-tribute architectural project extorted out of slaves..
00:12 < sylph_mako> -_- no. Like. Ancient ruins; unnavigable without climbing gear, apparently by design. Might be a crock but I have a WHACKY THEORY I want to investigate if it's not.
00:12 < strangewarp> Oh, not Chaco Canyon then
00:13 < sylph_mako> That was in reply to an earlier comment.
00:13  * strangewarp nods
00:14 < strangewarp> Chaco Canyon is mostly flat though, which is why I say it can't be that :p
00:26 < Utopiah> Machu Picchu?
00:35 < sylph_mako> seems unlikely.
00:36 < sylph_mako> At least most of it is hospitable.
00:37 < strangewarp> If it's Mesa Verde, they already probably figured it out - it was built as a last line of defense against a rampaging band of Aztecs, probably by the descendents of the people who were probably enslaved to build the Chaco Canyon pueblo complexes
00:39  * strangewarp lots of "probably" caveats, since there is still some controversy I think
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11:26 < delinquentme> anyone happen to have the research paper on whatever process was used to get insulin from microbes?
11:26 < delinquentme> was this written about in a research paper?
11:30 < chris_99> are you thinking of that video a while back
11:30 < chris_99> because what he did wasn't actually creating insulin
11:30 < chris_99> it was an 'art' project apparently
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12:03 < delinquentme> chris_99, I can think of one video which was on jalopnik or something that was makin prozack or something
12:03 < delinquentme> Is there some hello world for novel compound creation in yeast?
12:04 < chris_99> oh yeah it was prozac
12:04 < chris_99> i'd be interested in that too delinquentme
12:04 < chris_99> just bought a book about yeast
12:04 < delinquentme> chris_99, I've got some in my freezer :D
12:05 < chris_99> for what?
12:05 < delinquentme> and a bunch of 96 well microplates
12:05 < chris_99> ooh cool
12:05 < delinquentme> baking I think lol
12:05 < chris_99> nice, i do brewing
12:05 < delinquentme> you know about the iGem group that put resveratrol into beer right?
12:05 < chris_99> nope
12:05 < delinquentme> google that shit!
12:06 < delinquentme> i think it was last years iGem
12:06 < chris_99> very interesting, so it extends the life of yeast?
12:06 < delinquentme> bewm!
12:06 < delinquentme> http://www.iptv.org/exploremore/ge/what/insulin.cfm
12:07 < chris_99> cool
12:25 <@kanzure> update: walnut creek sucks
12:25 < jrayhawk> i bet it's not even made of walnuts :mad:
12:25 <@kanzure> in a walut up a creek without a paddle
12:25 <@kanzure> .. i a walutshell
12:25 <@kanzure> *in a walnutshell
12:26 <@kanzure> i kept trying to think of brilliant walnut/creek jokes, but i've got nothing yet
12:26 <@kanzure> but it's def. nice to see the FBI go all out on a 1-star hotel
12:28 < jrayhawk> the GSA took all the nice ones
12:29 <@kanzure> http://images.memegenerator.net/instances/21869192.jpg
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13:36 <@kanzure> lolz it's just raining money in SF isn't it?
13:36 <@kanzure> (nailed another contract; haven't been here for long)
13:47 <@kanzure> in other news: turtles fall out of love after 115 years http://news.discovery.com/animals/tortoise-couple-breaks-up-120611.html (yes i'm kidding, i don't expect any of you to click)
14:23 < _Sketch_> kanzure: What do you do for work?
14:24 <@kanzure> sit around naked all day
14:25 <@kanzure> mostly software contracting- web apps, mobile apps, the works
14:26 < _Sketch_> aha.
14:26 < _Sketch_> Dangit. Is all mind-mapping software in Java? :(
14:27 <@kanzure> mind-mapping software tends to suck immensely
14:27 < _Sketch_> WikkaWiki is PHP! yaaaaay
14:27 < _Sketch_> So it would seem, kanzure.
14:28 < _Sketch_> I could write my own... amazing, programming is like having superpowers. ;)
14:29 < _Sketch_> But I'm pressed for time, so searching is way easier. Hee.
14:37 <@kanzure> i don't think php is the right solution for your problem
14:37 <@kanzure> but i you are married to php, i think semanticmediawiki has some silly mindmapping mod/plugin thing
14:37 <@kanzure> *if you are
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14:44 < _Sketch_> 'yaaaay' being entirely sarcastic.
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14:50 <@kanzure> someone was asking for the current location of a library genesis..
14:50 <@kanzure> http://libgen.info/
15:06 <@kanzure> "Wow, I love my room btw. I've got a sliding glass door that leads out directly to the pool area. I'm thinking after-hours get togethers. :-)"
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15:06 <@kanzure> 1) is he coming on to me
15:07 <@kanzure> 2) why does he get the cool room >:(
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15:18 < chris_99> do you use Flask kanzure?
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15:32 <@kanzure> chris_99: sometimes, but not on anything in production at the moment
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15:32 < chris_99> aha cool, i've just started using it, i've had to give up on Play unfortunately do to memory issues
15:32 <@kanzure> Magic-Smoke: are you the magic smoke that keeps escaping my resistors?
15:32 <@kanzure> chris_99: give django a shot
15:33 <@kanzure> chris_99: and then repent and learn rails/sinatra anyway
15:33 < chris_99> django/rails are too heavy weight for what i need
15:33 <@kanzure> have you used them before?
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15:33 < chris_99> i've looked into them
15:33 < chris_99> but not used them
15:37 <@kanzure> the biggest shock to me when i picked up rails was how many more gems and plugins there were than for django.
15:37 <@kanzure> flask is more similar to sinatra, of course
15:39 < chris_99> because i've only got a limited amount of ram i want something that's as small as possible really
15:42 <@kanzure> jrayhawk: so, i made a merge commit in a feature branch a few weeks ago, committed a bunch of new stuff, and now want to rebase on master instead of merging things around
15:42 <@kanzure> jrayhawk: how do i correct this? i have to "undo" my merge from a thousand commits ago?
15:42 <@kanzure> or is the solution something else
15:57 < jrayhawk> well, the 'i don't have a particular reason to give a shit about the history' approach is to revert it
16:00 < jrayhawk> if this is an educational exercise or an excersize in pedanticism you can rebase or filter-branch depending on exactly what it is you want
16:00 <@kanzure> i'd like to keep the work i did, heh
16:01 <@kanzure> basically i want to pretend like i was rebasing on top o master the entire time, instead of that nasty merge commit in the iddle.
16:01 < jrayhawk> yeah, that's rebase's job
16:01 <@kanzure> someone else requested this; i convinced him that this isn't necessary.. but now i'm wondering how i would do it anyway.
16:01 <@kanzure> *on top of
16:01 <@kanzure> ok
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17:06 < delinquentme> I think the term " hit site " that I've been using is incorrect
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17:07 < delinquentme> anyways I'm looking for a program that I could compare a list of chemicals to a binding site for possible candidates
17:07 <@kanzure> CHARMM.
17:07 <@kanzure> or other molecular physics simulators.
17:10 < delinquentme> so like
17:11 < delinquentme> I need to do folding type processing to get out candidates?
17:12 <@kanzure> folding is only for folding amino acids into proteins
17:14 < delinquentme> biobricks dont happen to have their yield molecules in that database do they?
17:14 < delinquentme> bc I'd need those to run the site matching
17:14 <@kanzure> what?
17:14 < delinquentme> of the "hit sites"
17:14 < delinquentme> like where the molecules would bind to one another
17:15 <@kanzure> biobricks can't do "yields" because that entirely depends on the circuit, not the component
17:15 <@kanzure> the binding sites are annotated in pdb and on some ncbi somewhere, probably entrez
17:15 <@kanzure> *on some ncbi site somewhere
17:15 < delinquentme> so it would be more what that gene codes for
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17:16 <@kanzure> what are you doing?
17:16 < delinquentme> biobricks contains genes as well
17:16 < delinquentme> I'm trying to put together a simple example of picking out a molecule from the KEGG database
17:16 < delinquentme> and then matching it with some new gene to make a novel modification
17:16 <@kanzure> do you mean a protein?
17:17 <@kanzure> ok. so you want to find proteins that bind together?
17:17 < delinquentme> yeah
17:17 <@kanzure> look up cofactors or ligand binding
17:18 < delinquentme> what they make is totally arbitrary so long as whatever protein the new gene codes for is non-naturally occuring
17:18 < delinquentme> and it reacts with / matches the selected protein yield from the normal Ecoli pathway
17:18 <@kanzure> ok then that is called "rational protein design" or "rational protein engineering"
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17:20 < delinquentme> kk
17:20 < delinquentme> be back later
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18:21 < fenn> archels: http://nipo1987.web.fc2.com/RRK.html
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--- Log closed Tue Jun 12 00:00:38 2012