--- Log opened Tue Apr 23 00:00:05 2013 01:04 -!- Charlie [~quassel@74.63.212.44] has quit [Ping timeout: 260 seconds] 01:06 -!- Charlie [~quassel@74.63.212.44] has joined ##hplusroadmap 01:24 < kanzure> i am having trouble remembering all of the tiny nodejs packages. 01:29 -!- Charlie [~quassel@74.63.212.44] has quit [Ping timeout: 264 seconds] 01:39 -!- ThomasEgi [~thomas@185.5.8.81] has joined ##hplusroadmap 01:39 -!- ThomasEgi [~thomas@185.5.8.81] has quit [Changing host] 01:39 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has joined ##hplusroadmap 01:41 -!- cpopell [~cpopell@pool-96-231-37-73.washdc.fios.verizon.net] has quit [Ping timeout: 272 seconds] 01:44 < kanzure> hm.. this looks thorough: https://github.com/hyperandroid/Automata 02:15 -!- Viper168 [~Viper@unaffiliated/viper168] has quit [Ping timeout: 240 seconds] 02:18 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has quit [Remote host closed the connection] 02:18 -!- Viper168 [~Viper@node75.18.251.72.1dial.com] has joined ##hplusroadmap 02:18 -!- Viper168 [~Viper@node75.18.251.72.1dial.com] has quit [Changing host] 02:18 -!- Viper168 [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 02:27 -!- chris_99 [~chris_99@unaffiliated/chris-99/x-3062929] has joined ##hplusroadmap 02:36 < rigel> so apparently phantomjs had selenium support built-in 02:36 < rigel> but then not so much, and ghost.py was suggested 02:38 < rigel> part of my problem, i guess, is that i am using the webdriver'd ff instance both for automation and for probing 02:51 -!- Charlie [~quassel@74.63.212.44] has joined ##hplusroadmap 03:06 -!- yorick [~yorick@oftn/member/yorick] has joined ##hplusroadmap 03:07 < kanzure> rigel: phantomjs recently had a webdriver implemented, yes. 03:07 < kanzure> ghost.py isn't really similar, but yours truly has a few commits in that repo anyway. 03:08 < kanzure> lots of folks like casperjs, but i've never wanted it. 03:10 < kanzure> phantomjs has the webkit remote debugger enabled if you want to use that for development 03:21 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has quit [Remote host closed the connection] 03:29 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has joined ##hplusroadmap 03:34 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has quit [Ping timeout: 256 seconds] 03:45 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has joined ##hplusroadmap 04:01 < nmz787_> makoLime: nope, I usually use irssi 04:02 * nmz787_ nmz787 04:02 -!- nmz787_ is now known as nmz787 04:05 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has quit [Ping timeout: 256 seconds] 04:22 < makoLime> nmz787, oh, so the "Page closed" quit message is... irssi refering to tabs as pages? 04:24 -!- augur [~augur@208.58.5.87] has quit [Remote host closed the connection] 04:25 -!- augur [~augur@208.58.5.87] has joined ##hplusroadmap 04:27 < superkuh> Lame. NASA's STI Reports are still censored by the Dept. of Homeland Security but their RSS feed still updates with titles and summaries. Such a tease. The service has been censored for going on a month now. 04:29 -!- augur [~augur@208.58.5.87] has quit [Ping timeout: 245 seconds] 04:32 < nmz787> makoLime: not sure what you're talking about 04:40 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has quit [Ping timeout: 252 seconds] 04:40 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 04:41 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has joined ##hplusroadmap 04:44 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Ping timeout: 256 seconds] 04:46 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 04:48 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Ping timeout: 260 seconds] 04:49 -!- makoLime [~mako@103-9-42-48.flip.co.nz] has quit [Ping timeout: 264 seconds] 05:07 -!- FooQuuxman [~arik@c-98-215-254-55.hsd1.il.comcast.net] has joined ##hplusroadmap 05:07 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has joined ##hplusroadmap 05:15 -!- Mariu [Jimmy98@89.41.57.33] has joined ##hplusroadmap 05:24 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has joined ##hplusroadmap 05:34 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has quit [Ping timeout: 256 seconds] 05:48 -!- phryk [~phryk@static.39.216.9.176.clients.your-server.de] has quit [Read error: Connection reset by peer] 05:52 -!- phryk [~phryk@static.39.216.9.176.clients.your-server.de] has joined ##hplusroadmap 05:54 -!- Gues_____ [~textual@pool-173-53-82-6.rcmdva.fios.verizon.net] has joined ##hplusroadmap 05:54 -!- Gues_____ is now known as Guest62774 05:56 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has joined ##hplusroadmap 06:49 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has quit [Ping timeout: 276 seconds] 07:12 -!- ezrios [~Ezrios@excarn.net] has quit [Ping timeout: 245 seconds] 07:21 -!- ParahSail1n [~pwang@unaffiliated/parahsailin] has quit [Quit: Leaving] 07:27 -!- nully [elisa@funkykitty.net] has quit [Read error: Operation timed out] 07:27 -!- nully [elisa@funkykitty.net] has joined ##hplusroadmap 07:58 -!- delinquentme [~asdfasdf@coffeebar.static.monkeybrains.net] has joined ##hplusroadmap 07:58 < delinquentme> le weh 08:13 -!- ThomasEgi [~thomas@185.5.8.81] has joined ##hplusroadmap 08:13 -!- ThomasEgi [~thomas@185.5.8.81] has quit [Changing host] 08:13 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has joined ##hplusroadmap 08:13 -!- kajetan [122@d30-138.icpnet.pl] has quit [Ping timeout: 255 seconds] 08:29 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has quit [Remote host closed the connection] 08:45 -!- EnLilaSko [EnLilaSko@unaffiliated/enlilasko] has joined ##hplusroadmap 08:52 -!- delinquentme [~asdfasdf@coffeebar.static.monkeybrains.net] has quit [Ping timeout: 268 seconds] 08:56 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has joined ##hplusroadmap 08:59 -!- augur [~augur@ip-64-134-41-137.public.wayport.net] has joined ##hplusroadmap 09:21 -!- SDr_ is now known as SDr 09:21 -!- SDr [~ask@ec2-176-34-193-178.eu-west-1.compute.amazonaws.com] has quit [Changing host] 09:21 -!- SDr [~ask@unaffiliated/sdr] has joined ##hplusroadmap 09:26 -!- Mariu [Jimmy98@89.41.57.33] has quit [Ping timeout: 248 seconds] 09:33 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has joined ##hplusroadmap 10:09 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has quit [Ping timeout: 260 seconds] 10:14 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has joined ##hplusroadmap 10:15 -!- Viper168_ [~Viper@node129.18.251.72.1dial.com] has joined ##hplusroadmap 10:15 -!- Viper168_ [~Viper@node129.18.251.72.1dial.com] has quit [Changing host] 10:15 -!- Viper168_ [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 10:19 -!- Viper168 [~Viper@unaffiliated/viper168] has quit [Ping timeout: 252 seconds] 10:25 -!- cpopell [~cpopell@pool-96-231-37-73.washdc.fios.verizon.net] has joined ##hplusroadmap 10:31 -!- Mariu [Jimmy98@89.41.57.33] has joined ##hplusroadmap 10:36 -!- augur [~augur@ip-64-134-41-137.public.wayport.net] has quit [Remote host closed the connection] 10:43 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has quit [Ping timeout: 260 seconds] 11:16 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has joined ##hplusroadmap 11:38 -!- Viper168_ [~Viper@unaffiliated/viper168] has quit [Ping timeout: 264 seconds] 11:45 < kanzure> brownies: since you like glowing crap so much, http://www.kickstarter.com/projects/antonyevans/glowing-plants-natural-lighting-with-no-electricit 11:46 < kanzure> who the hell pledged $10,000? 11:47 < kanzure> it's at $15666 and they are spamming my inbox with crap like "WE ALREADY REACHED 20% OF OUR GOAL" 11:47 < ParahSailin> ah geez 11:47 < kanzure> so.. i think they just pledged their own money in that. 11:47 < ParahSailin> definitely 11:48 < kanzure> i really don't like omri ("mr. genome compiler").. it's not a compiler, stop lying to me. 11:48 < ParahSailin> omri? 11:48 < kanzure> also, nobody likes adobe air/flash. 11:48 < kanzure> this is one of omri's projects 11:48 < ParahSailin> man theres so much absolute trash 11:49 < ParahSailin> and the sad thing is, there's not really much useful stuff that _can_ be done at the current level of technology 11:49 < kanzure> omri also raised something like $500k for his "genome compiler". 11:49 < kanzure> there's a lot of useful things that could be done.. the vast majority of lab equipment has no open source equivalent. 11:49 < ParahSailin> so no chance of weighing out the bad 11:53 < ParahSailin> what would it take to marshall the resources to do that 11:53 < kanzure> first thing is to figure out how to make the incentives align 11:54 < kanzure> there may or may not be a market for open source equipment. imagine that there's no market for it. even if there's no market, those devices are still worth having and using for our development activities. so the incentives are still tricky to figure out in that case. 11:54 < ParahSailin> i think pirated illumina would be a pretty killer app 11:54 < kanzure> the software? 11:54 < ParahSailin> no, the machine 11:55 < kanzure> well, biocurious is theoretically doing a teardown of an illumina today or tomorrow or w/e.. hopefully they document enough of it that we can ship it off to china. 11:55 < kanzure> i've asked them to also get a copy of any hard drives or ROMs on chips and shit, but they just looked at me confused. so it might not be a thorough teardown.. 11:56 < ParahSailin> they really got a gaiix that they can completely tear down 11:56 < ParahSailin> i have such a hard time believing that 11:57 < ParahSailin> i might even bet money on that 12:05 < ParahSailin> the theory of illumina isnt that complicated, it might not even be that hard to reverse engineer 12:06 < ParahSailin> tricks are the flow cell surface preparation and the clustering wet chemistry 12:06 < ParahSailin> who knows, the patents might even cover how those work 12:36 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has joined ##hplusroadmap 12:46 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has quit [Ping timeout: 260 seconds] 13:14 < kanzure> makerbot industries trying to patent obvious things http://forums.reprap.org/read.php?1,201914,201954 13:17 < ParahSailin> well, the legal definition of obvious is simple composition of things that are patented 13:18 < kanzure> guess i better start filing for patents on socially networked transcranial brain things. 13:25 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has quit [Remote host closed the connection] 13:26 < kanzure> stupid glowplant is up to $20k :( 13:27 < kanzure> pft "We will be printing our DNA with Cambrian Genomics who have developed a revolutionary laser printing system that massively reduces the cost of DNA synthesis." 13:27 < kanzure> "Funds raised will also be used to support our work to develop an open policy framework for DIY Bio work involving recombinant DNA." 13:27 -!- FooQuuxman [~arik@c-98-215-254-55.hsd1.il.comcast.net] has quit [Ping timeout: 264 seconds] 13:27 < kanzure> fuck those assholes. "open policy framework.." how about no? 13:27 < kanzure> "The framework will include recommendations for what kinds of projects are safe for DIY Bio enthusiasts " 13:27 < kanzure> what the hell is this shit :( 13:28 < kanzure> "Genome Compiler is software, designed by Omri and his team, which allows a user to easily design genetic sequences and order them online. The software includes a large database of genetic parts and a beautiful interface so you can easily combine them to create your desired results." 13:28 < kanzure> this is not a compiler. what a liar. 13:29 < ParahSailin> what printing dna? 13:29 < ParahSailin> laser printing dna? 13:32 < kanzure> fenn wrote some notes in the logs about what cambrian genomics is actually doing.. it's something like "let's use sequencing to reduce the cost of gene synthesis" or something. 13:33 < ParahSailin> i should just give up doing honest work and be a charlatan 13:37 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has joined ##hplusroadmap 13:42 < ParahSailin> the upshot is that we won't have any more how-do-i-make-a-glowing-plant posts on diybio 13:43 < kanzure> no they are going to increase :( 13:45 < ParahSailin> kanzure: lets do a charlatan kickstarter to get money to divert towards a useful open hardware 13:45 < kanzure> well it seems that people only donate if they like the video and the rewards 13:45 < kanzure> and the rewards seem to have to be actual products, which i don't really want to do. that's low margins and a lot of work.. 13:46 -!- Guest62774 [~textual@pool-173-53-82-6.rcmdva.fios.verizon.net] has quit [Quit: ["Textual IRC Client: www.textualapp.com"]] 13:49 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has joined ##hplusroadmap 13:49 < kanzure> ParahSailin: how about you just tell me what you want to do and i just pay for it 13:49 < kanzure> ParahSailin: isn't that easier? 13:50 -!- ManaLord [~ManaLord@c-a8b0e455.37-0081-74657210.cust.bredbandsbolaget.se] has quit [Remote host closed the connection] 13:54 < ParahSailin> hm 13:56 -!- yorick [~yorick@oftn/member/yorick] has quit [Remote host closed the connection] 14:03 -!- _sol_ [~Sol@c-174-57-58-11.hsd1.pa.comcast.net] has joined ##hplusroadmap 14:07 -!- Juul [~Juul@208.87.217.74] has joined ##hplusroadmap 14:21 -!- toiletexplosion [~qibble@pool-96-245-180-195.phlapa.fios.verizon.net] has joined ##hplusroadmap 14:24 -!- AshleyWaffle [~qibble@unaffiliated/anastasiawyatt] has quit [Disconnected by services] 14:24 -!- toiletexplosion is now known as AshleyWaffle 14:25 -!- AshleyWaffle [~qibble@pool-96-245-180-195.phlapa.fios.verizon.net] has quit [Changing host] 14:25 -!- AshleyWaffle [~qibble@unaffiliated/anastasiawyatt] has joined ##hplusroadmap 14:34 -!- EnLilaSko [EnLilaSko@unaffiliated/enlilasko] has quit [Remote host closed the connection] 14:34 -!- makoLime [~mako@103-9-42-48.flip.co.nz] has joined ##hplusroadmap 14:35 -!- Juul [~Juul@208.87.217.74] has quit [Ping timeout: 252 seconds] 15:12 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has joined ##hplusroadmap 15:32 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has quit [Remote host closed the connection] 15:44 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has joined ##hplusroadmap 15:45 -!- ParahSailin [~Rob@50-194-178-148-static.hfc.comcastbusiness.net] has quit [Ping timeout: 248 seconds] 16:03 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has quit [Remote host closed the connection] 16:05 < makoLime> nmz787, you sometimes use an IRC client that has "page closed" as its quit message. I wonder what that is. 16:07 -!- chris_99 [~chris_99@unaffiliated/chris-99/x-3062929] has quit [Quit: Leaving] 16:13 < ThomasEgi> makoLime, a webchat client? 16:13 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has joined ##hplusroadmap 16:16 < makoLime> ThomasEgi, I'd presume so. 16:19 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has quit [Remote host closed the connection] 16:23 -!- augur [~augur@129-2-129-34.wireless.umd.edu] has quit [Remote host closed the connection] 16:28 -!- ielo [~ielo@cpc9-addl4-2-0-cust229.6-3.cable.virginmedia.com] has quit [Ping timeout: 256 seconds] 16:29 -!- SphericalMouse [62cfd610@gateway/web/freenode/ip.98.207.214.16] has joined ##hplusroadmap 16:31 < SphericalMouse> Sup? 16:31 < kanzure> busy being annoyed at omri 16:31 < kanzure> trying to pick projects to dump money into 16:32 < SphericalMouse> ? 16:32 < kanzure> how goes the teardown? 16:32 < SphericalMouse> happens sunday 16:32 < kanzure> drats. 16:32 < SphericalMouse> filled up in under a day 16:33 < kanzure> photo everything. get the ROMs off the chips. 16:33 < SphericalMouse> have you done group teardowns before? 16:33 < kanzure> no. i've done teardowns before on my own, though. 16:34 < SphericalMouse> I'm just wondering how to best present it 16:35 < kanzure> get one of those mirror-based overhead projectors to show the smaller parts on a wall 16:35 < SphericalMouse> that would just cast a shadow 16:35 < SphericalMouse> maybe having a camera guy linked into a projector 16:54 -!- ParahSail1n [~pwang@99-25-200-252.lightspeed.hstntx.sbcglobal.net] has joined ##hplusroadmap 16:54 -!- ParahSail1n [~pwang@99-25-200-252.lightspeed.hstntx.sbcglobal.net] has quit [Changing host] 16:54 -!- ParahSail1n [~pwang@unaffiliated/parahsailin] has joined ##hplusroadmap 16:56 -!- augur [~augur@208.58.5.87] has joined ##hplusroadmap 17:09 < kanzure> ParahSail1n: ask SphericalMouse about your teardown woes 17:11 < SphericalMouse> ? 17:11 < kanzure> SphericalMouse: give him a minute, geeze.. 17:12 < SphericalMouse> just saying im here is all 17:12 < kanzure> okay 17:24 < ParahSail1n> hey 17:24 < ParahSail1n> you have access to a ga2x? 17:26 < SphericalMouse> depends, the ones at biocurious are just GAs 17:26 < SphericalMouse> might have some 2xs at work 17:33 < SphericalMouse> what do you need? 17:34 < ParahSail1n> you were reverse engineering one? 17:35 < SphericalMouse> no, we use them as test platforms 17:36 < ParahSail1n> what does your work do? 17:36 < SphericalMouse> though that would an amusing case of lost knowledge 17:37 < SphericalMouse> we make DNA sequencers 17:37 < ParahSail1n> illumina competitor? 17:38 < SphericalMouse> not quite 17:40 < kanzure> just think of the benefits for your employer: if you can prove that illumina's software is wrong, that would be a net gain. 17:40 < kanzure> hint: embedded stuff is usually wrong in a number of ways, unless it happens to be nasa.. 17:41 -!- augur [~augur@208.58.5.87] has quit [Remote host closed the connection] 17:42 < SphericalMouse> does anyone use GAs any more anyways? 17:42 < ParahSail1n> i think that the embedded stuff is not likely to be a problem with the illumina systems 17:42 -!- augur [~augur@208.58.5.87] has joined ##hplusroadmap 17:42 < ParahSail1n> because all the embedded stuff has to do is transmit the images to the RTA software on the computer 17:42 < SphericalMouse> not even that 17:43 < kanzure> well, i'd also be willing to take a stab at the software on the computer. 17:43 < kanzure> which i do not have. 17:43 < ParahSail1n> kanzure, i can give you a password to download casava and olb if you want 17:43 < kanzure> sure. not right now. stuffing my face with food and acting like i can write javascript. 17:44 < ParahSail1n> casava's like 1.5 GB 17:44 < kanzure> what's in it? 17:45 < ParahSail1n> i forget if casava includes the rta software or if its just deindexing and miscellaneous stuff 17:45 < SphericalMouse> http://www.illumina.com/software/genome_analyzer_software.ilmn 17:45 < ParahSail1n> there's a shitty mapper included i think 17:46 < SphericalMouse> not sure if it is much use without test images though 17:46 < kanzure> most of the time vendors put extra software on, or they make mistakes in the product and release other software online 17:46 < ParahSail1n> i might have test images somewhere 17:47 < ParahSail1n> hm, looks like illumina doesnt require login anymore http://support.illumina.com/documents/MyIllumina/6e422abb-dc36-4d09-b223-0eafef26ddc5/CASAVA_v1.8.2.tar 17:47 < kanzure> i am also curious about their security.. do they have significant blocks against just dumping your own software onto the device, etc. 17:50 < SphericalMouse> you mean while connected to the computer? 17:51 < kanzure> that's also worth exploring i think 17:51 < kanzure> what is their connection anyway? 17:51 < kanzure> usb? has anyone sniffed it? 17:52 < SphericalMouse> think its usb, but maybe usb to serial 17:53 < SphericalMouse> the GA is elegant in its lack of pretense 17:54 < kanzure> ah yes... "elegant" http://med.fsu.edu/userImages/6-Illumina--HiSeq-2000.jpg 17:55 < SphericalMouse> thats a hiseq 17:55 < ParahSail1n> hm the server at work must not be the one that is hooked up to the ga2x's 17:55 < kanzure> actually i guess that doesn't look as bad as the bage boxes like the rest 17:55 < ParahSail1n> so they give you a proprietary computer to hook up to the sequencer? 17:56 < SphericalMouse> just a dell 17:56 < SphericalMouse> at least for the GA 17:57 < ParahSail1n> i guess the machine doesnt have to be that fast, because it does like one cycle every few hours 17:57 < nmz787> howdy 17:58 < nmz787> this might be useful for ROM dumping the illumina http://conference.hitb.org/hitbsecconf2013ams/materials/D1T1%20-%20Travis%20Goodspeed%20-%20Nifty%20Tricks%20and%20Sage%20Advice%20for%20Shellcode%20on%20Embedded%20Systems.pdf 17:58 < SphericalMouse> not really true, needs to process large data files. 17:58 < ParahSail1n> but it has plenty of time to do that 17:59 < SphericalMouse> the cycle time is the collection of those large files 17:59 < ParahSail1n> oh, really? the cycle time is compute bound? 17:59 < SphericalMouse> modern systems are faster too 18:00 < SphericalMouse> not really 18:00 < ParahSail1n> the cycle time is camera bound? 18:00 < SphericalMouse> roughly 18:00 < ParahSail1n> er, microscope 18:00 < ParahSail1n> ah 18:01 < SphericalMouse> these vary between models and configurations 18:03 < nmz787> SphericalMouse: have you seen the blu-ray drive sled stereolithography paper? 18:03 < SphericalMouse> no 18:03 < nmz787> they made <1micron features in SU-8 using unmodified blu-ray optics @ 2 mm distance 18:03 < ParahSail1n> wow 18:04 < nmz787> so the question i have is, can the drive spindle be moved about 1.5mm away from the lens in off-the-shelf drives (without removing the sled from the drive) 18:05 < nmz787> if so, you could simply wire up the spindle motor, sled translation motor, and laser 18:05 < nmz787> throw some polar coordinate software together 18:06 < SphericalMouse> was the system in the paper 1d? 18:06 < nmz787> they took the sled and put it on an XY stage 18:06 < nmz787> and Z! then tested Z depths 18:06 < nmz787> and found 2mm was best 18:07 < nmz787> i guess with that thickness SU-8 at least 18:07 < SphericalMouse> might have more to do with the focal plane of the laser than the su8 18:08 < SphericalMouse> how fast? was it? 18:10 < SphericalMouse> I didn't work with these guys, but I sat near them https://str.llnl.gov/Mar12/spadaccini.html 18:10 < nmz787> http://diyhpl.us/~bryan/papers2/paperbot/High%20resolution%2C%20low%20cost%20laser%20lithography%20using%20a%20Blu-ray%20optical%20head%20assembly.pdf 18:10 < nmz787> did you know lars ullrich? 18:11 < nmz787> wait 18:11 < nmz787> no 18:11 < nmz787> ulrich schaff 18:11 < SphericalMouse> no 18:11 < nmz787> who the hell is lars? 18:11 < nmz787> hah 18:11 < nmz787> drummer of metallica 18:11 < nmz787> lol 18:14 < nmz787> how about Greg Sommer? 18:14 < nmz787> he's a microfluidics guy 18:16 < SphericalMouse> no, looks like he was at sandia, not livermore 18:17 < nmz787> ahh 18:17 < SphericalMouse> got to go eat dinner, maybe back later 18:17 < nmz787> see ya 18:17 < ParahSail1n> illumina's profit margin is 70% 18:18 < SphericalMouse> thats a bit misleading. 18:18 < ParahSail1n> seems it wouldnt be that hard to rip off their systems 18:18 < SphericalMouse> ~lols~ 18:19 < ParahSail1n> i wonder why BGI hasn't 18:20 < SphericalMouse> because chemistry is hard, and so is precision engineering. Why else buy complete genomics 18:21 < ParahSail1n> i dont think it's _that_ hard 18:22 < SphericalMouse> its not hard to do it poorly. bit why doesn't everyone use ion torrent systems? 18:23 < ParahSail1n> ion torrent is more expensive per data 18:24 < SphericalMouse> but cheaper machines and faster runtimes 18:25 < ParahSail1n> normally people dont need data faster when its so expensive 18:26 < SphericalMouse> i'm not sure how the cheapest per data iontorrent runs stack up against the miseq costwise 18:26 < ParahSail1n> seems like there's no reason to use miseq 18:27 < SphericalMouse> better data quality I guess 18:28 < ParahSail1n> its about the same or worse than hiseq 18:28 < SphericalMouse> you dont always need tons of data 18:28 < ParahSail1n> going to 150 cycles doesnt really get you anything useful 18:28 < SphericalMouse> 2x150 18:28 < ParahSail1n> if you dont need tons of data, you can outsource it to someone who will run a fraction of a lnae 18:29 < SphericalMouse> the hiseq is mostly 2x100 18:29 < SphericalMouse> yeah, I keep asking why not move to an all factory model. 18:30 < SphericalMouse> not sure what the average turnaround time is in a genome factory 18:30 < SphericalMouse> a few weeks maybe? 18:30 < kanzure> for synthesis? up to a couple months. 18:30 < SphericalMouse> sequencing 18:30 < ParahSail1n> turnaround time is a few days longer than the machine's run time at ucdavis 18:30 < ParahSail1n> and its <3k per lane 18:32 < SphericalMouse> I wa spart of a project that tried to use davis a year ago, and it seemed like it was hard to get approval to get in at the time 18:33 < SphericalMouse> maybe it was 2 years at this point. probably out of date, I guess 18:35 < ParahSail1n> i guess there might be situations where faster data off ion torrent or proton one could be worth it 18:40 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has quit [Read error: Connection reset by peer] 18:40 -!- klafka [~klafka@c-24-6-18-31.hsd1.ca.comcast.net] has joined ##hplusroadmap 18:45 < SphericalMouse> workflow is important 18:45 < SphericalMouse> i've heard complaints about the ~28 hour miseq runtime since you cant do a run a day 18:46 < SphericalMouse> nmz787, what do you want to do with a direct write system? 18:53 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has joined ##hplusroadmap 18:53 < delinquentme> hey does anyone in here know how information is encoded along the magnetic strip of a master card? 18:54 < delinquentme> specifically how much of the magnetics strip do I need to destroy so that any information is sufficiently difficult to retrieve? 19:01 < ParahSail1n> intention is to destroy? 19:01 -!- FooQuuxman [~arik@c-98-215-254-55.hsd1.il.comcast.net] has joined ##hplusroadmap 19:03 < delinquentme> ParahSail1n, correct 19:03 -!- SphericalMouse [62cfd610@gateway/web/freenode/ip.98.207.214.16] has quit [Ping timeout: 245 seconds] 19:04 < delinquentme> so for example ... if the information is encoded across the entire strip ... if I cut it in half theres not much chance to reconstruct half the information 19:04 < ParahSail1n> scrape it off? 19:13 < delinquentme> not bad@ 19:13 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has quit [Ping timeout: 245 seconds] 19:20 -!- aristarchus [~aristarch@unaffiliated/aristarchus] has joined ##hplusroadmap 19:24 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has joined ##hplusroadmap 19:36 < delinquentme> Juul, whats going on man!! 19:36 < delinquentme> questionmarks. 19:37 < Juul> :) 19:37 < Juul> i'm chillin' at sudo 19:37 < delinquentme> I'm sitting here sucking on coffee drawing venn diagrams 19:37 < Juul> drawing venn diagrams with coffee mug stains? 19:37 < rigel> see, THIS is what i'm fucking talking about 19:37 < delinquentme> wondering if theres a quicker way than the normal step-wise education process to get thing into my brain 19:37 < delinquentme> HA! 19:37 < rigel> i implemented this class in python using selenium webdriver 19:37 < delinquentme> not bad! 19:38 < rigel> and now i can just swap out for https://github.com/detro/ghostdriver 19:38 < rigel> i knew there was a reason i made myself do it that way 19:39 < rigel> also dongs 19:39 < rigel> lul 19:40 < Juul> what's the reason for the standard -80 C freezers? 19:40 < Juul> who concluded that -80 was the right temperature? 19:41 < rigel> now all i need is to integrate https://github.com/murilobr/amf.js into my toolchain somehow 19:44 < delinquentme> Juul, maybe engineering ? 19:46 < Juul> delinquentme, possibly 19:47 < Juul> i'm looking into building a small low-cost -80 freezer for diybio 19:47 < Juul> i'm not going to blindly design for -80 though 19:48 < rigel> dry ice? 19:48 < rigel> yeah, dry ice 19:48 < delinquentme> oh wow 19:49 < rigel> just like food freezers are targeted at 28-30f 19:49 < delinquentme> how do commercial ones get that low? 19:49 < rigel> in a pinch, you can load it up with dry ice to keep a -80c freezer cool 19:49 < delinquentme> I'd assume the PSU and the heat exchanger are the expensive parts 19:49 < delinquentme> rigel, I dont think Juul is trying to fix a one off 19:49 < delinquentme> I think hes after building something that can be replicated 19:49 < rigel> i was making comments about design 19:50 < Juul> rigel, you're saying they designed them based on the approximate temperature of dry ice 19:50 < Juul> could be 19:50 < rigel> and why -80c was likely chosen 19:50 < delinquentme> ohhh 19:50 < Juul> it's about 78 if i remember 19:50 < rigel> yeah -78c 19:50 < rigel> so, a couple degrees cooler than that 19:50 < rigel> dry ice is easily available 19:50 < Juul> I'll have to see if there is some research on different temperatures 19:51 < Juul> no reason to spend more money on a -80 capable pump if -40 is fine 19:51 < rigel> how will you stabilize -40 if something breaks down 19:51 < rigel> i think that's part of the issue 19:52 < rigel> design for failure 19:52 < rigel> at -40 what are your options, -80, which is a substantial temperature difference, or 0, which is a substantial temperature difference 19:53 < Juul> do you think there will be damage to cells by varying between -40 and -80? 19:53 < Juul> i guess that's likely 19:53 < rigel> for storage you want stable temperature 19:53 < Juul> ok, good point 19:54 < rigel> if you have to store things at -40, get a failure, and then dump a bunch of dry ice on them in the interim 19:54 < rigel> then you either let them thaw back to -40 or you keep them at -80 19:57 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has quit [Ping timeout: 252 seconds] 19:57 < Juul> thanks for the logic 19:57 < Juul> i'm gonna bike home and cook some dinner 19:57 < Juul> later 19:57 -!- Juul [~Juul@50-0-83-116.dsl.static.sonic.net] has quit [Quit: .] 20:10 -!- Viper168 [~Viper@node132.19.251.72.1dial.com] has joined ##hplusroadmap 20:10 -!- Viper168 [~Viper@node132.19.251.72.1dial.com] has quit [Changing host] 20:10 -!- Viper168 [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 20:12 < ParahSail1n> i think you can get -80s pretty cheap on auction 20:27 -!- FooQuuxman [~arik@c-98-215-254-55.hsd1.il.comcast.net] has quit [Ping timeout: 264 seconds] 20:49 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has joined ##hplusroadmap 20:51 -!- delinquentme [~asdfasdf@64-13-15-38.eug.clearwire-dns.net] has quit [Client Quit] 21:00 -!- delinquentme [~asdfasdf@192.195.81.250] has joined ##hplusroadmap 21:01 < delinquentme> best options for getting a static address to forward to a dynamically assigned IP? 21:29 < klafka> hey delinquentme how are you liking it out here 21:29 < klafka> or are you in eugene now 21:29 < klafka> all up in oregon 21:31 < delinquentme> klafka, hahah nah dude im here right now in the mission kicking ass 21:31 < delinquentme> loving the shit out of lIFEEE 21:31 < delinquentme> also got a bike! 21:31 < klafka> ah awesome 21:31 < klafka> yeah you need one there :P 21:32 < klafka> i got done with a psychedelic conference this weekend 21:32 < klafka> hey kanzure do you remember a ferrouswheel ? 21:34 < kanzure> yes i remember ferrouswheel 21:34 < kanzure> joel pitt 21:36 -!- delinquentme [~asdfasdf@192.195.81.250] has quit [Ping timeout: 264 seconds] 21:36 < kanzure> rigel: what do you need amf for? 21:36 < kanzure> flash serialization? 21:37 < klafka> i met his partner at the maps conference 21:37 < klafka> it was really weird how it happened 21:41 < abetusk> any recommendations for things to check out in Boston while I'm there? 21:42 < kanzure> bosslab 21:43 < kanzure> avery louie 21:43 < kanzure> alec resnick.. he's probably at sprouts. 21:43 < kanzure> this guy http://edboyden.org/ 21:43 < klafka> yeah omg 21:43 < klafka> can you just like go up to his lab and be like 'hay guys sup' 21:43 < kanzure> probably 21:44 < kanzure> there's a lot of fablab people at mit so there's probably at least one or two different events going on 21:45 < kanzure> i think jason bobe (diybio) still lives in boston? who knows. george church's group would be fun to visit. 21:47 < klafka> what are they doing these days 21:48 < kanzure> george church is busy finding the next 200 companies to play co-founder at 21:49 -!- aristarchus [~aristarch@unaffiliated/aristarchus] has quit [Quit: Leaving] 21:49 < abetusk> I feel weird about just dropping in without anything specifically to talk about 21:49 < kanzure> usually the protocol is to send an email in advance 21:49 < abetusk> yeah, I should have planned better 21:49 < kanzure> ask about any presentations, or if someone could give you a tour if they're into that, etc. 21:49 < kanzure> turns out people love blabbing about their projects. 21:50 < kanzure> also if you have particular lab expertise that you think they would benefit from, you should offer to do a presentation or whatever. 21:50 < kanzure> although usually it is very obvious if they want that. 21:51 < kanzure> this one time, paul rothemund was in town 21:51 < kanzure> and i swear at least two grad students were assigned to tracking him down and getting him to show up to do presentations 21:54 < klafka> oh kanzure that's a great idea 21:54 < abetusk> ok, thanks kanzure. I'll try and send some emails out when I'm there and see if they can squeeze me in before I leave 22:40 < juri_> kanzure: if you're looking for some reverse engineering.. we should talk more. as a 'found engineer', i build most of the things I own out of whatever others throw away. that involves a lot of reverse engineering. i've also helped random strangers build thousands of PCs over the last few years (again, out of what others throw away). do you have something small you'd like dox'd, and re-engineered? 23:03 < kanzure> juri_: how about the rest of http://github.com/openyou/emokit 's protocol 23:04 < juri_> um, why would i bother? 23:04 < juri_> (one second, getting a URL) 23:04 < kanzure> huh? you just asked for interesting things to reverse engineer? 23:04 < kanzure> my answer seems reasonable. 23:05 < juri_> http://mirage335.dyndns.org/wiki/BiosignalAmplifier 23:05 < juri_> I;ve been working with the developer of that. ---^ 23:05 < kanzure> what about it? 23:05 < kanzure> ok. 23:05 < juri_> so, why would i work on reverse engineering the proprietary one, when there's an open attempt to do the same task? 23:06 < kanzure> the reason that emokit is interesting is because there's a consumer headset that people are buying. 23:06 < juri_> want one of mirage's kits? that can be aranged. 23:06 < kanzure> because why would i use that kit when i can just use openeeg? fuck. 23:08 < kanzure> there might be a reasonable answer to that question 23:08 < juri_> However, as of 2012-03-14, the already well published Common-Mode Shield Driver and AC Coupling Feedback seem not to have been implemented. 23:09 < juri_> so, mirage's kit is less noisy. i've been meaning to work on his cabling (esata instead of sata), but haven't found the time. 23:09 < kanzure> i'm not sure if modulareeg is part of openeeg, if that's what you mean 23:09 < kanzure> oh wait modulareeg is 23:09 < juri_> yes, it is. 23:09 < kanzure> yes yes i corrected myself yeesh 23:10 -!- yashgaroth [~ffffff@cpe-66-27-118-94.san.res.rr.com] has joined ##hplusroadmap 23:10 < juri_> no fair. i've been working so hard to get one over on you.. ;P 23:10 < kanzure> shouldn't be that hard. 23:10 < juri_> 'kanzure, you are the WRONG one! WRONG-o-WRONG-o-WRONG!' i've even got a dance made up. 23:11 < kanzure> alright 23:11 < juri_> still, in this case, i think my effort is better spent improving the open alternatives. 23:11 < kanzure> the open alternatives to modulareeg? 23:11 < juri_> no, either modulareeg or mirage's toy. 23:12 < juri_> either way, the one you want reverse engineered.. is there a reason to use it over a modularEEG/biosignalamp? 23:12 < kanzure> no, it's terrible and i hate it 23:12 < kanzure> but that was partly why i started reversing the protocol 23:12 < kanzure> in general, this hatred extends to all eeg. i'm not sure if an eeg project being open source is enough to get me excited these days. :( they just end up fairly disappointing.. 23:13 * juri_ nods. 23:13 < kanzure> "64 channels, but we can only train 3 actions. have fun, dinkwad." 23:13 < juri_> agreed. my input to mirage's work has been just some advice, and some 3d printer work/parts. 23:14 < juri_> so, again, i can't directly bio-hack.. but if you need something fixed, printed, or a printer fixed, i'm here. ;) 23:15 < juri_> also, i'd need one of the items in question in my hands, to do a deep reverse engineer.. unless its protocol level stuff, like you pointed to. i just think that we should let the users of the closed gear suffer with the gear. 23:16 < kanzure> i may or may not have some anonymously contributed header files that i've been working from 23:16 < juri_> fun. :) 23:17 < kanzure> i don't have the device anymore either. 23:17 < juri_> oh wow, i pointed you at the wrong link. 23:18 < juri_> http://mirage335.dyndns.org/wiki/Mirage335BiosignalAmp 23:34 < juri_> so, you don't have one.. so whom would we be helping by reversing the protocol then? a company's customerbase, which does not include either of us? 23:45 < rigel> kanzure: ustream uses it to obfuscate their direct video URLs --- Log closed Wed Apr 24 00:00:06 2013