--- Log opened Wed Jul 10 00:00:21 2013 00:12 -!- yashgaroth [~ffffff@cpe-66-27-118-94.san.res.rr.com] has quit [Quit: Leaving] 00:22 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Quit: Leaving] 00:28 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 00:59 < heath> kanzure: is your copy of "molecular biology of the cell" 1.8gb? 01:00 < heath> the djvu is 63mb over here, but the pdf conversion made it 1.8gb 01:00 < heath> paperbot: molecular biology of the cell 01:00 < heath> do it 01:07 * heath threatens paperbot with a .meow 01:08 -!- superkuh [~superkuh@unaffiliated/superkuh] has joined ##hplusroadmap 01:08 * heath accepts his 1.8gb pdf and sleeps through sb6.0 01:22 -!- kmo is now known as kajetan 01:24 -!- Juul [~Juul@50-0-83-158.dsl.static.sonic.net] has joined ##hplusroadmap 01:41 -!- Burnin8 [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has joined ##hplusroadmap 01:45 -!- Burninate 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jonathan_ 07:19 <@kanzure> beep boop 07:19 -!- oblique [~oblique@87-143-95.netrun.cytanet.com.cy] has joined ##hplusroadmap 07:22 < chido> bzz 07:24 -!- Lemminkainen [uid2346@gateway/web/irccloud.com/x-awiuozprdxaxsfud] has joined ##hplusroadmap 07:26 -!- mode/##hplusroadmap [+q AlonzoTG1!*@*] by kanzure 07:29 -!- marciogm [~textual@177.106.57.86] has joined ##hplusroadmap 07:46 -!- kajetan [122@unaffiliated/kmo] has quit [Remote host closed the connection] 07:46 -!- Coornail_ is now known as Coornail 07:48 -!- Burninate [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has quit [Read error: Connection reset by peer] 07:58 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Ping timeout: 246 seconds] 07:58 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 08:04 -!- balrog [~balrog@discferret/developer/balrog] has joined ##hplusroadmap 08:04 -!- Coornail is now known as Guest22827 08:04 -!- Charlie_ is now known as Guest8188 08:06 -!- ielo [~ielo@pool-96-255-47-217.washdc.fios.verizon.net] has joined ##hplusroadmap 08:16 -!- Viper168_ [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 08:17 -!- Viper168 [~Viper@unaffiliated/viper168] has quit [Ping timeout: 248 seconds] 08:18 -!- Viper168_ is now known as Viper168 08:18 -!- Burninate [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has joined ##hplusroadmap 08:22 -!- balrog [~balrog@discferret/developer/balrog] has quit [Quit: Bye] 08:22 -!- balrog [~balrog@discferret/developer/balrog] has joined ##hplusroadmap 08:33 <@kanzure> "A Japanese startup called Spiber Inc. said it has produced an artificial spider thread that it claims is equal to steel in tensile strength yet as flexible as rubber. The company hopes to spin enough of the thread for mass production within two years, potentially opening the door to creating lighter but stronger auto parts, surgical materials and bulletproof vests. Spiber plans to produce one metric ton, or 2,205 pounds, of spider silk by ... 08:33 <@kanzure> ... 2015. By November, it aims to triple its current monthly output to about 220 pounds. One promising venture was Montreal-based Nexia Biotechnologies, which engineered goats to produce milk containing spider's silk. The company, which raised $42.4 million in an initial public offering in 2000, folded in 2009 when it failed to make its research commercially viable. Since going public with its production technique last August, Spiber said it ... 08:34 <@kanzure> ... has received more than a hundred requests to collaborate on projects. With a 750-million-yen ($7.6 million) investment from auto-parts maker Kojima Press Industry Co., Spiber broke ground on a prototype center and pilot plant in the northwest Japanese city of Tsuruoka earlier this month. But it will face competition from Germany's AMSilk GmbH, which says it plans to scale up lab production of the spider-silk fiber it calls Biosteel. Its ... 08:34 <@kanzure> ... product also is made entirely from recombinant silk proteins that are processed via a spinning apparatus to recreate the structure of spider silk. Another competitor is Michigan-based Kraig Biocraft Laboratories Inc., which says it has genetically engineered silkworms that spin silk containing spider fiber. A small amount of spider protein can strengthen the normal silk produced by silkworms, it said." 08:35 < ParahSailin> been hearing this shit for the last 20 years almost 08:36 < gradstudentbot> Someone's sitting at my bench space. 08:37 <@kanzure> spiber seems sorta new so i dunno how you would have heard that for 20 years. goats, sure, 20 years. silkworm too. 08:37 <@kanzure> i guess they don't say what their technique is 08:37 <@kanzure> how would you even know 08:39 < ParahSailin> intuition 08:40 <@kanzure> which technique do you predict they are using, then 08:41 < ParahSailin> paperbot: http://dx.doi.org/10.1007/s00210-002-0577-3 08:44 < ParahSailin> whatever theyre doing to make silk proteins in macro amounts its not working 08:52 -!- brownies_ is now known as brownies 08:57 -!- helleshin [~talinck@69.61.156.24] has joined ##hplusroadmap 08:58 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Ping timeout: 260 seconds] 09:25 -!- kmo [~kmo@apn-5-60-167-144.dynamic.gprs.plus.pl] has joined ##hplusroadmap 09:48 -!- Burnin8 [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has joined ##hplusroadmap 09:51 -!- Burninate [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has quit [Ping timeout: 248 seconds] 10:01 -!- delinquentme [~asdfasdf@66.233.132.203] has joined ##hplusroadmap 10:17 -!- delinquentme [~asdfasdf@66.233.132.203] has quit [Ping timeout: 260 seconds] 10:19 <@kanzure> "hackubator" 10:19 <@kanzure> see, this is why we shouldn't let jojack out on his own 10:31 < heathjs> http://ellingtonlab.org/blog/2012/11/09/on-apologetics/ 10:32 <@kanzure> oh yeah he totally fucking hates biobricks 10:32 <@kanzure> jonathan_: can vouch for that, i think 10:33 < jonathan_> biobricks are like arduino. it's an educational tool for high school kids. 10:33 < jonathan_> that's why he calls them "toys" 10:38 <@kanzure> fwiw my time with him was fun and informative 10:40 <@kanzure> "William also did his 3D Origami thang, but took it into new dimensions, so to speak, by examining the impact of DNA shape on cellular uptake" 10:40 <@kanzure> hrm i didn't hear about that one 10:44 -!- delinquentme [~asdfasdf@66.233.132.203] has joined ##hplusroadmap 10:45 < ParahSailin> i dont think they'll solve the age-old spidroin production problem until "basic" molecular genetics are way ahead from where they are now 10:46 < ParahSailin> like, maybe to the point of an hour to produce a 20kb circular plasmid from scratch 10:51 <@kanzure> paperbot: http://dx.doi.org/10.1007/s00210-002-0577-3 10:51 -!- paperbot [~paperbot@131.252.130.248] has joined ##hplusroadmap 10:51 <@kanzure> oops sorry about that 10:53 -!- helleshin [~talinck@69.61.156.24] has quit [Read error: Connection reset by peer] 10:55 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 10:56 < delinquentme> FUCK 10:56 < delinquentme> fucking. 10:57 < gradstudentbot> My parents keep asking when I'm going to finish. 11:15 -!- ielo [~ielo@pool-96-255-47-217.washdc.fios.verizon.net] has quit [Ping timeout: 276 seconds] 11:51 < heathjs> https://www.youtube.com/watch?v=JtHgIJ6kalk&feature=player_detailpage#t=3362s 11:51 < heathjs> .title 11:51 < yoleaux> Do You Want To Live Forever? - YouTube 11:51 < gradstudentbot> I don't think my PI remembers me. 11:52 < heathjs> title is misleading, it's the part of the video where richard miller and martin raff tear into aubrey 11:58 -!- heathjs is now known as heath 12:23 < ParahSailin> lol c++ 12:24 < ParahSailin> i have the feeling that i should write my own version for when the boondoggle committee effort falls further behind schedule 12:27 < ParahSailin> one of the guys was using some xml parsing library that required certain whitespace to parse correctly 12:28 < ParahSailin> it didn't like the python xml.etree output, and i had to do xml.dom.minidom reparse and pretty output on that 12:31 <@kanzure> you should use xml pull parser or xmlpp or something 12:31 < ParahSailin> and why we using xml instead of json? for serialization to/from php of course 12:33 < ParahSailin> presumably if there's xml in the php standard namespace, nobody can remember if it's camelCase or under_scores, so it's impossible to find in an array of 9001 items, so php wizards use xml instead 12:34 < gradstudentbot> You don't happen to have any more virgin flies, do you? 12:53 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 12:55 -!- helleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has quit [Ping timeout: 268 seconds] 13:02 -!- heath [quassel@2600:3c02::f03c:91ff:feae:6e5b] has quit [Changing host] 13:02 -!- heath [quassel@unaffiliated/ybit] has joined ##hplusroadmap 13:16 -!- ielo [~ielo@pool-96-255-47-217.washdc.fios.verizon.net] has joined ##hplusroadmap 13:18 -!- eridu [~eridu@gateway/tor-sasl/eridu] has joined ##hplusroadmap 13:19 -!- Viper168 [~Viper@unaffiliated/viper168] has quit [Ping timeout: 240 seconds] 13:23 -!- ielo [~ielo@pool-96-255-47-217.washdc.fios.verizon.net] has quit [Ping timeout: 248 seconds] 13:27 -!- delinquentme [~asdfasdf@66.233.132.203] has quit [Ping timeout: 240 seconds] 13:31 -!- lupfantomo [~lupfantom@24-159-24-229.dhcp.jcsn.tn.charter.com] has quit [Ping timeout: 246 seconds] 13:31 -!- Guest22827 is now known as Coornail 13:35 -!- hehelleshin is now known as Helleshin 13:41 <@kanzure> jrayhawk: do you remember if zotero translation-server had a wacky build system on their own fault, or was it because gecko has a wacky build system? 13:42 -!- eridu [~eridu@gateway/tor-sasl/eridu] has quit [Remote host closed the connection] 13:45 -!- spreelanka_ [~spreelank@24-197-147-19.dhcp.gwnt.ga.charter.com] has joined ##hplusroadmap 13:45 -!- lupfantomo [~lupfantom@24-159-24-229.dhcp.jcsn.tn.charter.com] has joined ##hplusroadmap 13:46 -!- lichen_ [~lichen@c-24-21-206-64.hsd1.or.comcast.net] has joined ##hplusroadmap 13:49 -!- jrayhawk_ [~jrayhawk@nursie.omgwallhack.org] has joined ##hplusroadmap 13:49 -!- Burn_ [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has joined ##hplusroadmap 13:49 -!- lichen [~lichen@c-24-21-206-64.hsd1.or.comcast.net] has quit [Ping timeout: 248 seconds] 13:53 -!- Netsplit *.net <-> *.split quits: spreelanka, Burnin8, jrayhawk 13:53 -!- spreelanka_ is now known as spreelanka 13:59 < jrayhawk_> kanzure: IIRC they expected custom-patched binaries to be copied into the source directory, but I've already repressed most of what I learned from that experience. 14:01 -!- makoLime [~mako@103-9-42-133.flip.co.nz] has joined ##hplusroadmap 14:01 <@kanzure> i just blew my mind up, i am collecting the pieces 14:01 <@kanzure> this is extremely cool: 14:01 <@kanzure> https://wiki.gnome.org/Seed 14:01 <@kanzure> "Seed is a library and interpreter, dynamically bridging (through GObjectIntrospection) the WebKit JavaScriptCore engine, with the GNOME platform." 14:01 <@kanzure> it uses JavaScriptCore in the outer context (like phantomjs does) 14:02 <@kanzure> and then it can use webkit because there's webkitgtk+ gobject bindings 14:02 <@kanzure> apparently all the node developers ignored it because "oh maybe it will be useful for GUIs" 14:02 <@kanzure> https://groups.google.com/forum/#!topic/nodejs/OFfKXdIbzYk 14:02 <@kanzure> the one downside that i see is that there's no require() implementation yet.. but it's only 100 or 200 lines of javascript to implement that. 14:03 <@kanzure> so basically this should be compatible with all node modules 14:03 <@kanzure> and node modules that use node-specific apis can be forced to work in seedjs using a trick similar to what substack did in browserify 14:04 <@kanzure> https://git.gnome.org/browse/seed-examples/tree/ 14:06 -!- marciogm_ [~textual@177.106.57.86] has joined ##hplusroadmap 14:08 -!- marciogm [~textual@177.106.57.86] has quit [Ping timeout: 260 seconds] 14:08 -!- Burn_ [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has quit [Ping timeout: 260 seconds] 14:08 -!- Burn_ [~Burn@pool-108-18-159-219.washdc.fios.verizon.net] has joined ##hplusroadmap 14:09 -!- Netsplit over, joins: Burnin8 14:10 -!- hehelleshin [~talinck@69.61.156.24] has joined ##hplusroadmap 14:14 -!- chidori [chidori@pasky.or.cz] has joined ##hplusroadmap 14:15 <@kanzure> sudo apt-get install seed; git clone git://git.gnome.org/seed-examples; cd seed-examples; seed json-reddit.js 14:17 -!- Netsplit *.net <-> *.split quits: Helleshin, abetusk, Burn_, chido 14:18 -!- chidori is now known as chido 14:19 -!- superkuh [~superkuh@unaffiliated/superkuh] has quit [Quit: the neuronal action potential is an electrical manipulation of reversible abrupt phase changes in the lipid bilayer] 14:25 -!- Netsplit over, joins: abetusk 14:25 -!- abetusk is now known as Guest95236 14:30 -!- sivoais [~zaki@unaffiliated/sivoais] has quit [Ping timeout: 276 seconds] 14:30 <@kanzure> nmz787: http://smokinghotcoffee.com/posts/fertilab-thinkubator-is-bringing-diy-bio-hacking-to-the-startup-community-in-eugene-or 14:31 <@kanzure> people to stalk: Matt Beaudet, Shula Jaron & Jason Boone 14:31 -!- ThomasEgi [~thomas@185.5.8.81] has joined ##hplusroadmap 14:31 -!- ThomasEgi [~thomas@185.5.8.81] has quit [Changing host] 14:31 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has joined ##hplusroadmap 14:31 <@kanzure> i think we know boone? 14:32 <@kanzure> oh they seem to be mostly large, slowly-loaded "infographics".. nevermind. 14:32 <@kanzure> i can't tell if they actually have equipment or not 14:33 <@kanzure> also they don't seem to be an incubator. they charge membership fees. that's a coworking space, not an incubaotr. an incubator will usually fund you in exchange for equity or something. 14:33 <@kanzure> man these guys are liars 14:34 < heath> .title https://www.youtube.com/watch?v=lV3Yhi9ib3Y 14:34 < yoleaux> Nanotechnology: Moving Beyond Small Thinking, Chad Mirkin, Northwestern University - YouTube 14:34 < heath> one of the better videos i've watched recently 14:36 <@kanzure> that's not hard to beat, you've been watching terrible synbio marketing pitches on youtube for like 3 weeks now 14:42 < heath> :) 14:55 < nmz787> what are revenue for public dna synthesis companies 14:55 <@kanzure> well the market size is <$1B ish 14:56 <@kanzure> by market size i mean revenue 14:56 <@kanzure> well.. no. my numbers are 12 months old and shouldn't be trusted. 14:58 < nmz787> do you have a list that i could plow through lexisnexis with? 15:00 <@kanzure> no, but i have a list of synthetic biology companies like: amyris, atg biosynthetics, blue heron, dna2.0, febit, geneart, ginkgo bioworks, genentech, ls9, sloning biotechnology, synthetic genomics, mr.gene, ambrx, codexis, complete genomics, halcyon molecular, solayzyme, navigenics, sequesco, pacific biosciences, raindance, kaiima biofuels, gevo, verdezyne, eureka genomics, genia, compete genomics 15:00 <@kanzure> oops, those turned into dna sequencing companies 15:01 <@kanzure> and the last one (compete) is a dupe of another (complete) 15:01 <@kanzure> idtdna 15:05 <@kanzure> hmm http://hg.mozilla.org/incubator/offscreen/ 15:09 -!- Sanky [~SankyZNC@unaffiliated/sanky] has quit [Read error: Operation timed out] 15:10 < jrayhawk_> paperbot: http://www.sciencedirect.com/science/article/pii/S1053811905002740 15:10 < paperbot> http://libgen.org/scimag4/10.1016/j.neuroimage.2005.04.023.pdf 15:13 -!- Sanky [~SankyZNC@unaffiliated/sanky] has joined ##hplusroadmap 15:14 -!- EnLilaSko [EnLilaSko@unaffiliated/enlilasko] has quit [Remote host closed the connection] 15:15 -!- sivoais [~zaki@unaffiliated/sivoais] has joined ##hplusroadmap 15:21 < nmz787> kanzure: that web page is pretty uninforming 15:21 < nmz787> i guess i have to watch their video 15:21 < nmz787> i was actually planning to head down near Eugene this weekend 15:22 <@kanzure> i didn't watch their video because it's video 15:22 <@kanzure> since they don't explicitly say they have equipment, my guess is that they have none 15:23 <@kanzure> plus, since they are wrong about their corporate structure (they are not an incubator), i don't have a lot of faith in these people 15:23 < nmz787> oh gosh, that video is an hour 15:24 <@kanzure> haha 15:25 < nmz787> hmm, this almost sounds like they have stuff http://fertilabthinkubator.com/node/5 15:25 < nmz787> says they offer chemistry 15:26 <@kanzure> they are vague about what they actually have 15:26 <@kanzure> and instead they have giant slowly-loading infographics 15:26 <@kanzure> so my guess: they are boneheads 15:27 < nmz787> ok emailed them 15:27 < nmz787> yeah i couldn't copy paste their email addy 15:28 < nmz787> life tech guy there http://www.linkedin.com/profile/view?id=76873282&authType=NAME_SEARCH&authToken=iC2r&locale=en_US&srchid=292975351373495306375&srchindex=1&srchtotal=8&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A292975351373495306375%2CVSRPtargetId%3A76873282%2CVSRPcmpt%3Aprimary 15:29 < nmz787> 'Lead scientist for development of Qubit ' 15:30 < nmz787> http://www.google.com/patents/?vid=USPATD653981 15:30 < nmz787> Fluorometer 15:30 < nmz787> assigned to life tech 15:30 <@kanzure> is it still active? 15:31 < nmz787> hah, another of their ppl are from lifetech 15:31 < nmz787> http://www.linkedin.com/pub/shula-jaron/5/30b/aa2 15:32 < nmz787> so they both have history or being managers 15:33 < nmz787> Jason Boone is VP at this place floragenex which is at PSBA http://www.linkedin.com/profile/view?id=187630138&authType=NAME_SEARCH&authToken=dc2Q&locale=en_US&srchid=292975351373495566508&srchindex=2&srchtotal=218&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A292975351373495566508%2CVSRPtargetId%3A187630138%2CVSRPcmpt%3Aprimary 15:34 < nmz787> but their tech doesn't look to flashy http://en.wikipedia.org/wiki/Restriction_site_associated_DNA_markers 15:37 -!- pan4x [panax@131.247.116.193] has joined ##hplusroadmap 15:38 -!- biostudent [~chatzilla@46.208.19.205] has joined ##hplusroadmap 15:38 < nmz787> so neither the interviewers nor the fertilab people realize biocurious used kickstarter 15:38 < nmz787> 'it would have been ahead of their time' [to use kickstarter] 15:39 < nmz787> that was just around 13:30 into the video 15:39 < nmz787> another 50 mins left 15:39 -!- panax [panax@131.247.116.193] has quit [Read error: Connection reset by peer] 15:44 <@kanzure> that's funny 15:44 -!- weles [~mariusz@c-71-234-3-169.hsd1.ct.comcast.net] has joined ##hplusroadmap 15:50 -!- Guest8188 [~quassel@74.63.212.44] has quit [Remote host closed the connection] 16:00 < nmz787> heath: why aren't you telling newbs about the diyhpl.us faq? 16:00 -!- chris_99 [~chris_99@unaffiliated/chris-99/x-3062929] has quit [Quit: Leaving] 16:00 < heath> hrm? 16:02 < nmz787> on diybio 16:02 <@kanzure> probably because of how embarrassed we are about it 16:02 <@kanzure> it hasn't improved much in years 16:02 <@kanzure> i think jonathan_ is literally the only person other than me who has ever cared 16:02 < nmz787> it improved last year 16:02 <@kanzure> jonathan_: btw thanks for caring about the faq 16:02 < nmz787> wasn't klafka helping you parse emails to questions? 16:03 <@kanzure> hey that's a good idea 16:03 < nmz787> ? 16:04 <@kanzure> parsing questions from my email dump 16:06 -!- Charlie [~quassel@74.63.212.44] has joined ##hplusroadmap 16:07 < heath> nmz787: i haven't said anything on diybio in a long time, it's almost turned into an rss feed for me 16:10 < heath> https://benchling.com/splash 16:10 < heath> wow, images instead of text 16:10 < heath> for the headers 16:12 < nmz787> heath, are you not the william heath that just posted something? 16:12 < heath> nope 16:12 < heath> heath matlock 16:12 < nmz787> ahh 16:12 < nmz787> well 16:12 <@kanzure> yeah, i have the same opinion of benchling as i do of synbiota 16:12 < nmz787> sry! 16:12 <@kanzure> https://synbiota.ca/welcome_page/welcome 16:13 < heath> i'm aware of that page 16:13 <@kanzure> haha now it's a social network 16:13 <@kanzure> awful 16:13 <@kanzure> "Access and edit DNA - the software of life, from any web browser using our desktop-class Open Source app" 16:13 <@kanzure> hatred 16:13 < heath> https://github.com/Synbiota/GENtle2 16:13 <@kanzure> there was this entire closed source component too. it was crazy. but why would i want to use a bad web ui on top of this? 16:14 <@kanzure> it would be better if there was actually good non-ui software for editing genomes and stuff 16:14 < heath> i don't think they are pursuing that idea anymore 16:14 <@kanzure> instead of everyone focusing on making terrible user interfaces that don't work or aren't useful 16:14 <@kanzure> it's like trying to make vectornti except worse 16:15 < heath> benchling actually has funding, but the only email i found was for cory li through the whois of the site 16:15 < heath> one of the two founders 16:15 < nmz787> i thought synbiota was all open 16:15 < nmz787> gentle2 is a nice start 16:15 <@kanzure> nah there was some email where connor got really hostile iirc 16:16 < nmz787> i've used gentle a bunch, and ApE, but never vectornti 16:16 <@kanzure> vectornti was this junk installed on all the lab computers at ut austin 16:16 < heath> i don't mind sites like benchling if they open source their main tools and they use git for version control 16:16 <@kanzure> it's actually used a lot, there's like 20,000 papers that cite using it 16:17 < nmz787> cool I am now a reviewer for the next open hardware summit talks! 16:17 <@kanzure> heath: i'm not entirely sure if git is the correct option for genome version control. maybe fossil. dunno. but also, just because it's open source doesn't mean it's a good idea. 16:17 < nmz787> just got the first 4 papers to review 16:17 <@kanzure> nmz787: me too, did windell ask you? 16:17 < nmz787> (talks) 16:17 < nmz787> yeah 16:20 <@kanzure> that's sad. i was hoping it would be someone else. 16:20 <@kanzure> is windell the only one asking people not in his immediate community? 16:24 < nmz787> "we need to move all of our equipment and furniture from its current home at the Broadway Commerce Center (44 West Broadway)" 16:24 <@kanzure> guess they might have equipment 16:24 < nmz787> so fertilab used to be in the same bldg or maybeused space of floragenex 16:24 < nmz787> (one of the founder's company) 16:24 < nmz787> http://fertilabthinkubator.com/node/26 16:24 < nmz787> 'News' 16:24 < nmz787> .title 16:24 < yoleaux> Breaking news!!! We have a new home! | FertiLab 16:25 <@kanzure> the /node/26 stuff means they are probably using drupal :( 16:25 <@kanzure> yep.. http://fertilabthinkubator.com/README.txt 16:25 -!- Viper168 [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 16:25 < nmz787> homegirl wants fertilab to be the 'nexus' of startup in eugene 16:25 < nmz787> software hardware biotech everything 16:25 <@kanzure> why is it startup-related? it's just another membership-fee lab. 16:26 < nmz787> it's really not any better than plaintext 16:26 <@kanzure> incubators are usually those things that give you things in exchange for equity. sometimes payment.. but that would be a weird relationship ("you want our money and equity??") 16:27 < nmz787> they said they have some $ 16:27 -!- Charlie [~quassel@74.63.212.44] has quit [Quit: http://quassel-irc.org - Chat comfortably. Anywhere.] 16:27 < nmz787> mentioned something about scholarships or something to come and try a startup in eugene 16:31 < nmz787> they have a vision to make it a GMO center of excellence, to test stuff for GMO 16:32 < nmz787> apparently countries are banning wheat from oregon 16:33 < nmz787> because some unallowed GMO strain was found growing somewhere it wasn't supposed to be 16:33 < nmz787> or somewhere it wasnt expected 16:38 -!- marciogm_ [~textual@177.106.57.86] has quit [Quit: Computer has gone to sleep.] 16:54 -!- yorick [~yorick@oftn/member/yorick] has quit [Remote host closed the connection] 17:03 < nmz787> huh, so this biotech company was found violating animal rights http://www.aphis.usda.gov/foia/enforcement_actions/2012/August/Animal%20Welfare%20Act%20(AWA)/Complaints/CA07655-AC%20Santa%20Cruz%20Biotechnology%20Complaint_Redacted.pdf 17:03 < nmz787> 'in willful violation' is used several times there 17:06 < gradstudentbot> The grant got rejected. 17:07 < nmz787> guess the company opened in 1991, and that pdf shows 5 years of violations 17:07 < nmz787> so i guess the law enforcement here sucks or they make enough to simply continue paying fines 17:08 < nmz787> which is weird, for things like a drivers license you can only have so many violations before they shut you down from driving 17:08 < nmz787> hmm, now the moral decision, should I cancel my order with this company because of this 17:10 -!- delinquentme [~asdfasdf@192-195-81-250.PUBLIC.monkeybrains.net] has joined ##hplusroadmap 17:18 -!- Burnin8 is now known as Burninate 17:26 <@kanzure> nmz787: heath is not william heath 17:26 <@kanzure> nmz787: these are two completely different people 17:26 <@kanzure> nmz787: william heath is xp_prg (you might remember him from the logs) 17:26 <@kanzure> nmz787: our heath is ybit (the not-evil one) 17:27 <@kanzure> check out the sort of bullshit that this other one spews, "The greatest amount of innovation in the history of mankind is happening at igem: http://igem.org/Main_Page" 17:27 <@kanzure> who the hell thinks that 17:29 < gradstudentbot> Oh man, that's a great scrabble word. I got to write that down. 17:29 < delinquentme> sooooo 17:30 < delinquentme> apparently sequencers .... 17:30 < delinquentme> are breaking chromosomes arbitrarily 17:30 < delinquentme> THEN sequencing 17:30 <@kanzure> yes 17:31 <@kanzure> even afm sequencing does that because you can't get 1 billion-long reads at a single time 17:31 <@kanzure> also because you need the parallelism or else it would take forever 17:31 <@kanzure> contigs, my friend.. 17:32 -!- mensch [~mensch@c-50-157-136-178.hsd1.ma.comcast.net] has joined ##hplusroadmap 17:35 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has quit [Remote host closed the connection] 17:36 < nmz787> well it appears sigma has the item for 2/3rd the price, so morally and logistically i can cancel that order 17:51 <@kanzure> nmz787: just wanna make sure you're not confusing those two heaths 17:52 < ParaSa1lin> heath richards was the best batman 17:58 -!- marciogm [~textual@187-26-87-85.3g.claro.net.br] has joined ##hplusroadmap 18:03 -!- marciogm [~textual@187-26-87-85.3g.claro.net.br] has quit [Ping timeout: 240 seconds] 18:05 -!- biostudent [~chatzilla@46.208.19.205] has quit [Ping timeout: 240 seconds] 18:50 -!- yashgaroth [~ffffff@cpe-66-27-118-94.san.res.rr.com] has joined ##hplusroadmap 18:57 < nmz787> good thing i've only had them confused for a week or three 19:03 -!- weles [~mariusz@c-71-234-3-169.hsd1.ct.comcast.net] has quit [Ping timeout: 248 seconds] 19:03 -!- mensch [~mensch@c-50-157-136-178.hsd1.ma.comcast.net] has quit [Ping timeout: 245 seconds] 19:06 -!- mensch [~mensch@c-50-157-136-178.hsd1.ma.comcast.net] has joined ##hplusroadmap 19:21 < delinquentme> but the thing is ... if it wernt arbitrarily chopped 19:21 < delinquentme> it would have logic going IN 19:21 < delinquentme> making assembly *way* cleaner 19:22 -!- delinquentme [~asdfasdf@192-195-81-250.PUBLIC.monkeybrains.net] has quit [Quit: Leaving] 19:25 -!- lupfantomo [~lupfantom@24-159-24-229.dhcp.jcsn.tn.charter.com] has quit [Read error: Operation timed out] 19:34 -!- ParahSai1in [~Rob@50-194-178-148-static.hfc.comcastbusiness.net] has joined ##hplusroadmap 19:37 -!- Shehrazad [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 19:37 -!- rigel_ [~pi@76.105.237.98] has joined ##hplusroadmap 19:38 -!- Thorbinator1 [~Thorbinat@66-237-51-34.starstream.net] has joined ##hplusroadmap 19:40 -!- heath is now known as ybit 19:40 < ybit> you're welcome nmz787 19:42 < ybit> how's your microfluidics project coming along? 19:42 < ybit> wait, i think that may have been wrldpc 19:43 -!- Netsplit *.net <-> *.split quits: rigel, ElixirVitae, Thorbinator, ParahSailin, streety 19:45 < ybit> nope that's you 19:45 < ybit> .title https://www.youtube.com/watch?v=b6zpEyDvdRA 19:45 < yoleaux> Intro to DNA, DNA synthesis, and microfluidics (Nathan McCorkle) - YouTube 20:00 < nmz787> ybit: lol 20:00 < nmz787> ybit: slowly, i just watched a video on COMSOL and microfluidics earlier 20:01 < nmz787> ybit: gonna design one in autodesk inventor to show a local place who is willing to fab it for me 20:01 < nmz787> so figure i'll try to throw it into COMSOL as well 20:02 < nmz787> the video i watched earlier had a cool slide, showing diffusion times in different volumes from 1mm cube to 1 um cube... 1uL to 1 femtoliter 20:02 < nmz787> 500s ... 0.5ms 20:02 -!- ielo [~ielo@216.239.164.82] has joined ##hplusroadmap 20:02 < nmz787> so i shouldn't have to worry about mixers! 20:09 -!- Netsplit over, joins: streety 20:18 -!- ielo [~ielo@216.239.164.82] has quit [Ping timeout: 245 seconds] 20:22 < nmz787> huh, so Santa Cruz Biotech caused a stir when they bought a ranch years ago, well before the USDA violations were filed http://www.metroactive.com/papers/cruz/07.18.96/biofarm-9629.html 20:23 -!- lupfantomo [~lupfantom@24-159-24-229.dhcp.jcsn.tn.charter.com] has joined ##hplusroadmap 20:25 < nmz787> 'Back Ranch Road' appears to be where they keep their goats... 20:29 -!- lichen_ is now known as lichen 20:30 < ParaSa1lin> all my goats make is poop 20:32 < nmz787> http://www.indybay.org/newsitems/2013/01/18/18730443.php?show_comments=1 20:32 < nmz787> .title 20:32 < yoleaux> Federal Investigations Reveal Severe Neglect of Animals at Santa Cruz Biotechnology : Indybay 20:32 < gradstudentbot> Where are the thermometers? 20:32 < nmz787> 'First-Ever Lawsuit Under California Cruelty Law Filed Against Animal Research Lab in Santa Cruz 20:32 < nmz787> ' 20:33 < nmz787> January 17, 2013 20:33 < nmz787> http://www.gtweekly.com/index.php/santa-cruz-news/santa-cruz-local-news/4629-animal-welfare-questioned.html 20:33 < nmz787> .title 20:33 < yoleaux> Animal Welfare Questioned | Santa Cruz Good Times 20:33 < nmz787> 13 MARCH 2013 20:33 < nmz787> bad times in the Good Times... strange 20:34 < nmz787> ' It also has facilities in Dallas, Tex., Germany and Shanghai, China.' 20:35 < nmz787> 'According to a May 12 APHIS report from last year, an inspector identified a goat lying on its side bleating loudly, suffering from a severe case of pneumonia. It died in front of the inspector. In August of last year, an inspector reported a goat had such a low weigh that its ribs were protruding dramatically. When the inspector informed the company's staff, they did not provide treatment but were found later to have continued harvesting its blood. 20:35 < nmz787> well, maybe the goats were making antibodies for emaciating illness? 20:35 < nmz787> 'On Oct. 31, APHIS inspectors discovered a fully operational production site operated by Santa Cruz Biotechnology called H7, just nine miles away from the main ranch. The existence of the site, which APHIS reports say housed 841 goats, several of which were severely sick, was previously denied by Santa Cruz Biotechnology personnel.' 20:36 < nmz787> interesting 20:37 < nmz787> 'a goat lost 23 percent body weight due to an inability to eat properly after a rattlesnake bite to the face ' 20:37 < nmz787> i wonder if the bite was intentional though 20:37 < nmz787> http://arstechnica.com/science/2013/01/why-would-a-biotech-company-keep-a-secret-herd-of-goats/ 20:39 -!- ielo [~ielo@216.239.164.82] has joined ##hplusroadmap 20:50 < nmz787> dang they made it to Nature http://blogs.nature.com/news/2011/04/antibody_provider_investigated.html 20:51 < nmz787> "Budkie says the fines imposed by the USDA are so small theyre virtually meaningless, and that some companies lump the fines into the cost of doing business." 20:51 < nmz787> "The Animal Welfare Act, passed in 1966, includes regulations for the treatment of warm-blooded animals involved in research but excludes rats from the genus Rattus, and mice from the genus Mus." 20:52 < nmz787> unfortunately as we recently learned a mouse only has 1-2mL of blood and is short-lived so isn't good for antibody production 20:52 < nmz787> .wa rat blood volume 20:53 < yoleaux> rat: maximum recorded blood mass (mass of blood as fraction of body mass): (data not available); Scientific name: Rattus 20:53 < nmz787> pfft 21:01 -!- hehelleshin [~talinck@69.61.156.24] has quit [Read error: Connection reset by peer] 21:01 -!- hehelleshin [~talinck@69-61-156-24.ubr1.dyn.lebanon-oh.fuse.net] has joined ##hplusroadmap 21:02 < Burninate> .wa guinea pig blood volume 21:02 < yoleaux> guinea pig: maximum recorded blood mass (mass of blood as fraction of body mass): (data not available); Scientific name: Cavia porcellus 21:02 -!- hehelleshin is now known as helleshin 21:02 < Burninate> .wa pig blood volume 21:02 < yoleaux> domestic pig: maximum recorded blood mass (mass of blood as fraction of body mass): (2.3 to 8.7)%; Scientific name: Sus domestica 21:03 < Burninate> also http://xkcd.com/434/ 21:05 < Burninate> oh 21:05 < Burninate> nmz787 You didn't finish the paste 21:06 < Burninate> "Excluded from the Act are birds, rats of the genus Rattus (laboratory rats), mice of the genus Mus (laboratory mice), farm animals, and all cold-blooded animals.[3]" 21:06 < Burninate> Pigs are farm animals. 21:07 < Burninate> and have significant biological compatibility with humans 21:09 < Burninate> why on Earth would you use goats? 21:10 < Burninate> with dere cuuuue widdwe faces 21:13 -!- mensch [~mensch@c-50-157-136-178.hsd1.ma.comcast.net] has quit [Ping timeout: 245 seconds] 21:22 < ParaSa1lin> maybe pigs are dangerous for that sort of thing 21:26 -!- Viper168 [~Viper@unaffiliated/viper168] has quit [Ping timeout: 245 seconds] 21:27 -!- Viper168 [~Viper@unaffiliated/viper168] has joined ##hplusroadmap 21:28 < ParaSa1lin> or maybe nobody wants to deal with pig shit 21:30 < ParaSa1lin> nobody ever got mauled to death and eaten after slipping in a sheep pen 21:31 <@kanzure> delinquentme: sequencing by short fragments isn't that big of a problem. this is why alignment exists. 21:34 <@kanzure> ParahSailin: man we really have to get on that antibody gravy train. 21:35 -!- marciogm [~textual@177.106.57.86] has joined ##hplusroadmap 21:36 < jonathan_> sb6 stream? 21:36 < ParaSa1lin> i think it would be somewhat difficult to verify the functional activity of avastin 21:36 <@kanzure> that was yesterday 21:38 < ParaSa1lin> paperbot, http://dx.doi.org/10.1002/anie.201302577 21:38 < paperbot> http://libgen.org/scimag5/10.1002/anie.201302577.pdf 21:41 < jonathan_> so no sb6? is that it :-( 21:56 -!- aristarchus [~aristarch@174-28-174-121.albq.qwest.net] has joined ##hplusroadmap 21:56 -!- aristarchus [~aristarch@174-28-174-121.albq.qwest.net] has quit [Client Quit] 21:58 -!- ielo [~ielo@216.239.164.82] has quit [Ping timeout: 248 seconds] 22:09 -!- marciogm [~textual@177.106.57.86] has quit [Quit: Computer has gone to sleep.] 22:25 < nmz787> paperbot: http://onlinelibrary.wiley.com/store/10.1002/anie.201302577/asset/201302577_ftp.pdf?v=1&t=hievp0s2&s=5cc03fa2279c49bc5a56780508c4c5d3968d9b71 22:25 < paperbot> http://libgen.org/scimag5/10.1002/anie.201302577.pdf 22:26 < nmz787> bitchin 22:28 < nmz787> ParaSa1lin: so you added some crazy stuff to paper bot? using that russian site? 22:29 < ParaSa1lin> indeed 22:31 < nmz787> does it use a proxy? 22:31 < nmz787> i wasn't able to use that russian site, and have since forgotten it's name 22:31 < ParaSa1lin> kanzure negotiated with sci-hub owner for limited access 22:32 < nmz787> ooooo 22:39 -!- superkuh [~superkuh@unaffiliated/superkuh] has joined ##hplusroadmap 23:04 -!- superkuh [~superkuh@unaffiliated/superkuh] has quit [Ping timeout: 246 seconds] 23:15 -!- randalla1ordon [~randall@71-222-89-132.ptld.qwest.net] has joined ##hplusroadmap 23:18 -!- randallagordon [~randall@71-222-82-23.ptld.qwest.net] has quit [Ping timeout: 246 seconds] 23:19 -!- Adifex [~Adifex@75-148-41-126-Colorado.hfc.comcastbusiness.net] has joined ##hplusroadmap 23:24 -!- ParahSai1in [~Rob@50-194-178-148-static.hfc.comcastbusiness.net] has quit [Ping timeout: 240 seconds] 23:27 -!- ParahSailin [~Rob@50-194-178-148-static.hfc.comcastbusiness.net] has joined ##hplusroadmap 23:46 -!- kmo [~kmo@apn-5-60-167-144.dynamic.gprs.plus.pl] has quit [Quit: Leaving] 23:50 -!- yashgaroth [~ffffff@cpe-66-27-118-94.san.res.rr.com] has quit [Quit: Leaving] 23:58 -!- Adifex [~Adifex@75-148-41-126-Colorado.hfc.comcastbusiness.net] has quit [Quit: Adifex] --- Log closed Thu Jul 11 00:00:22 2013