--- Log opened Tue May 09 00:00:48 2017
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04:35 < kanzure> hgp-write livestream http://www.bmediany.com/GP-writeMay2017/
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05:05 < kanzure> HAHA ONLY OUTLET, BUTTHEADS
05:30 < kanzure> http://www.fundingsmes.com/2014/02/24/enevolv-snags-1-79m-funding/
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05:50 < kanzure> https://twitter.com/molassemblies
05:59 < kanzure> they replaced art caplan with jonathan d. moreno https://twitter.com/pennprof
06:03 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=990c17fa Bryan Bishop: hpg-write meeting overview >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/overview/
06:03 < kanzure> jrayhawk: ikiwiki compilation time is getting pretty long :(
06:32 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=38a786e1 Bryan Bishop: transcript: overview >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/overview/
06:32 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=678da6ec Bryan Bishop: transcript: jef boeke >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/evolution-and-progress-of-hgp-write/
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06:41 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=f9b22113 Bryan Bishop: transcript: george church >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/evolution-and-progress-of-hgp-write/
06:46 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=fa77eed9 Bryan Bishop: transcript: Q&A for george etc >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/evolution-and-progress-of-hgp-write/
06:56 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=0b1b762b Bryan Bishop: jackson labs transcript >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/lessons-learned-from-reading-human-genomes/
07:04 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=d73984c7 Bryan Bishop: transcript: octopus genome >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/octopus-genome-insights/
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07:13 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=82fa5b00 Bryan Bishop: transcript: plants and phytodetectors >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/understanding-plants-for-human-and-environmental-use/
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07:22 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=9ae09a0d Bryan Bishop: transcript: ethical frameworks >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ethical-frameworks-for-hgp-write/
07:25 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=85174bd4 Bryan Bishop: more words >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ethical-frameworks-for-hgp-write/
07:34 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=0e09399b Bryan Bishop: transcript: more ethics >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ethical-frameworks-for-hgp-write/
07:37 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=aa994e08 Bryan Bishop: more Q&A >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ethical-frameworks-for-hgp-write/
07:44 < andytoshi> i'm confused about the transactions labeled 2017-05-10, i think this date has not happened yet
07:44 < andytoshi> transcripts*
07:58 < kanzure> oligo array for sgRNA synthesis is a cool idea.
07:58 < kanzure> andytoshi: which one?
07:59 < kanzure> cas9 tetherings, cool
08:01 < kanzure> .tw https://twitter.com/kanzure/status/861953430369259520
08:01 < yoleaux> Womp womp. @GP_write has asked me to not tweet top secret #GPwrite transcripts. Oh well. ?\_(?)_/? (@kanzure)
08:22 < kanzure> .tw https://twitter.com/GP_write/status/861956670704021504
08:22 < yoleaux> .@kanzure we only asked you not to publish transcripts after the webcast because our scientists are presenting unpublished research #GPwrite (@GP_write)
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08:32 < andytoshi> kanzure: ohh lol 2016-05-10 was 364 days ago
08:32 < andytoshi> not -1
08:32 < andytoshi> never mind
08:35 < kanzure> that was last year's meeting
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08:45 < andytoshi> yeah, i just read 05-10 as being a day after 05-09 and didn't notice the year, my bad
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08:55 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=006e3c0d Bryan Bishop: transcript: recombinase-mediated assembly >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/recombinase-mediated-assembly-and-isothermal-amplification-arrays/
08:56 < kanzure> .tw https://twitter.com/GP_write/status/861972050122080256
08:56 < yoleaux> Pilot Project: Our first citizen scientist Max Berry discusses isothermal amplification array to extend genetic gene sequences. #GPwrite https://pbs.twimg.com/media/C_ZW9dtXcAAP9ys.jpg (@GP_write)
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09:04 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=10aec4fd Bryan Bishop: transcript: virus resistance >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ultrasafe-cell-line/
09:07 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=47424365 Bryan Bishop: Q&A >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/ultrasafe-cell-line/
09:10 < kanzure> they didn't want that one uploaded either; but it's the same content as the 2016 version...
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10:25 < kanzure> .tw https://twitter.com/kanzure/status/861995576031928320
10:25 < yoleaux> @markgerstein Well, someone could recode viruses to match. (@kanzure, in reply to tw:861976090411225088)
10:31 < kanzure> TODO: hair loss SNPs for non-facial hair
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11:45 < kanzure> hmph
11:48 < kanzure> "in situ production of neurotransmitters in the gut"
11:49 < kanzure> .title http://www.hmdb.ca/
11:49 < yoleaux> Human Metabolome Database
11:51 < archels_> kanzure: point being to influence the CNS?
11:53 < kanzure> nah i think they want dopamine flavored feces
11:58 < kanzure> .wik staphylococcus epidermidis
11:58 < yoleaux> "Staphylococcus epidermidis is a Gram-positive bacterium, and one of over 40 species belonging to the genus Staphylococcus. It is part of the normal human flora, typically the skin flora, and less commonly the mucosal flora." -- https://en.wikipedia.org/wiki/Staphylococcus_epidermidis
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13:12 < kanzure> too many scientists here, not enough engineers. "wow if we use nanopore sequencers then all our problems are solved"-- no kidding?
13:14 < juri_> i'm engineer. i science sometimes, too.
13:24 < archels_> https://www.youtube.com/watch?v=5f5Kk5RReUE
13:24 < archels_> what has scien^D^D^D^D^D engineering done
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13:50 < juri_> i didn't build that.
13:59 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=56a5885f Bryan Bishop: overview of gp-write project structure >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/center-of-excellence-for-engineering-biology/
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14:22 < gnusha_> https://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=e2f99ead Bryan Bishop: brainstorming session thing >> http://diyhpl.us/diyhpluswiki/transcripts/hgp-write/2017-05-09/hgp-write-scientific-executive-committee-panel-discussion/
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14:28 < kanzure> "High molecular weight DNA assembly in vivo for synthetic biology applications" http://www.tandfonline.com/doi/pdf/10.3109/07388551.2016.1141394
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17:30 < kanzure> blort
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19:42 < kanzure> george church says for synaptic barcoding at synapse interface, do FISSEQ stuff with antibodies targeted to post-synaptic cleft or pre-synaptic cleft, and just sequence both sides to get the barcode on both ends
19:42 < kanzure> however, to me this sounds like this requires tissue slicing-- which might not be problematic if barcoding actually works anyway (because then you just recover the barcodes even if you were incapable of visually followig the dendrite)
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--- Log closed Wed May 10 00:00:49 2017