--- Log opened Sat Oct 08 00:00:41 2022
02:07 -!- qnexvr [~darsie@84-113-55-200.cable.dynamic.surfer.at] has joined #hplusroadmap
03:27 < kanzure> "MechRetro is a chemical-mechanism-driven graph learning framework for interpretable retrosynthesis prediction and pathway planning" https://arxiv.org/abs/2210.02630
03:38 < kanzure> "USPTO-50k: Subset and preprocessed version of Chemical reactions from US patents (1976-Sep2016) by Daniel Lowe. It includes 50K randomly selected reactions that was later classified into 10 reaction classes by Nadine Schneider et al." https://paperswithcode.com/dataset/uspto-50k
03:38 < kanzure> well i guess that's the only public database.
03:43 < kanzure> https://github.com/deepchem/deepchem/blob/master/deepchem/molnet/load_function/uspto_datasets.py
03:43 < kanzure> .title https://github.com/deepchem/deepchem 
03:43 < saxo> GitHub - deepchem/deepchem: Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
03:43 < kanzure> https://deepchem.io/
03:44 < kanzure> https://github.com/deepchem/deepchem/tree/master/examples
03:48 < kanzure> "Learning graph models for template-free retrosynthesis" https://www.bunne.ch/papers/Somnath_2020_ICML_GRL+.pdf
03:49 < kanzure> some interesting manuscripts based on USPTO-50k https://scholar.google.com/scholar?hl=en&as_sdt=0%2C44&q=%22USPTO-50K%22&btnG=
03:56 < kanzure> SaaS retrosynthetic analysis https://www.molecule.one/
03:57 < kanzure> https://github.com/molecule-one/megan
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05:47 < kanzure> nmz787: that's a pretty cool project. thanks.
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07:56 < muurkha> kanzure: too bad it starts so late, the stuff before 01976 is probably more interesting
08:10 < kanzure> i wonder how good this tool is
08:11 < kanzure> like will it do vitamin b12?
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14:24 < fenn> "building tools using GitHub Actions that people can clone to their own accounts is a really promising way of developing sophisticated automated software that people can then run independently, entirely through the GitHub web interface" uhhh independently is not the right word
14:27 < fenn> youtube's auto transcriptions are trash
14:28 < fenn> i mean, it was better than nothing? and sometimes you could understand it even
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14:44 < fenn> hm i didn't realize Whisper can do language translation too, but that makes perfect sense
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14:58 < fenn> apparently it costs a lot less to run whisper jobs in batches, at least when using google cloud with A100 40GB GPUs
15:01 < fenn> https://www.assemblyai.com/blog/how-to-run-openais-whisper-speech-recognition-model/#cost-to-run-whisper
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15:11 < nmz787> kanzure: emailed the prof Magierowski to see if he's interested in collab
15:12  * nmz787 goes to tractor invasive weeds and maybe scrape paint on a hut-on-trailer that I think I'll use as a hunting outpost
15:13 < fenn> pressure washer
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18:08 < kanzure> in-q-tel has invested in george's mammoth resuscitation project https://prestonhollow.advocatemag.com/2022/10/03/cia-invests-colossal-biosciences/ (why?)
18:09 < kanzure> fenn: there is an offline github action runner called action i think
18:11 < kanzure> https://www.iqt.org/how-can-we-use-biology-to-solve-global-issues/
18:32 < L29Ah> .t https://www.youtube.com/watch?v=pazhJ8AoInQ
18:32 < saxo> SPIRULINA DISH FROM CHAD - YouTube
18:32 < Muaddib> [pazhJ8AoInQ] SPIRULINA DISH FROM CHAD (5:44)
18:32 < L29Ah> chad chads eat spirulina
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18:42 < nmz787> fenn: yeah I need a pressure washer raster bot
18:42 < nmz787> we have been wetting with pressure washer, then scraping wet flakes
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21:57 < fenn> that spirulina dish is positively shreklishious
21:57 < fenn> okra flour really? for extra slime i suppose
22:17 < fenn> "enhancing crop species to tolerate increasingly severe climatic changes" does seem like the sort of thing the CIA would be doing
22:18 < fenn> "Strategically, it’s less about the mammoths and more about the capability. ... leadership in biotechnology will allow the U.S. to help set the ethical, as well as the technological, standards for the use of this technology."
22:19 < fenn> ethical meaning, things that further the interests of the U.S.
22:20 < fenn> why WOULDN'T they invest in it
22:22  * fenn grumbles about the mirror image DNA molecule and clip-art equations
22:56 < lsneff> Any of you tried whisper [https://github.com/openai/whisper]?
22:57 < lsneff> It runs surprisingly well on my laptop (on cpu) for transcribing talks, even with the tiny.en model
23:00 < lsneff> I bet it could go realtime if run on a gpu. you might be out of a job, kanzure
23:02  * nmz787 runs pip install git+https://github.com/openai/whisper.git 
23:02 < nmz787> pytorch is 776 MB.... sure glad I got this starlink speed
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23:05 < lsneff> 133 MB for me, but I guess it probably doesn't take along all the cuda stuff on macs
23:07 < lsneff> nmz787: we're currently pushing right up against network capacity in the us, speeds will probably get worse before they get way better with gen2
23:09 < nmz787> well, it's still better than the reliably 5MPBS LTE, which sometimes went up to 20 or so, but inconsistently (I believe the network was throttling me due to the tower being basically the only one for a good 20-30 mile radius
23:11 < lsneff> gotcha
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23:12 < lsneff> we're expecting maybe 7-10x per satellite with gen2 and then another 5-7x on that with a later iteration currently in dev, hopefully should be must better by then
23:14 < lsneff> anyway, whisper is super neat
23:15 < lsneff> Really want some modern text-based transformers to be open-sourced
23:28 < nmz787> 7-10X speedup?
23:28 < nmz787> from current?
23:29 < nmz787> when I lived in the city I had fiber but never paid for more than 30/30 MBPS
23:29 < lsneff> bandwidth per satellite, more or less
23:29 < nmz787> so already I'm pretty happy
23:30 < nmz787> mounted it with basically no obstructions too, so it rarely cuts out
23:30 < nmz787> maybe once or twice a week
23:30 < nmz787> for a tolerable amount of time
23:30 < nmz787> actually this week the power failed for a moment, which meant the system had to reboot
23:30 < nmz787> I need to get a UPS for it
23:33 < lsneff> great to hear that you're happy with it
--- Log closed Sun Oct 09 00:00:42 2022