2009-03-02.log

--- Day changed Mon Mar 02 2009
Genemiraculin lettuce00:00
GeneI WANT SOMe00:00
Geneor some bacteria that produces a floatant and can live in the chlorinated environment of a fountain00:02
kanzureGene: did you see the solutions for actuation in sharpie mf?00:02
Genehold on00:07
GeneI00:07
Geneadobe just got fixed00:08
Geneno00:09
Genedidn't00:09
Geneshit, that paper on mf auto cfd is for low reynold #s00:14
Geneie at scales where water behaves like syrup00:15
kanzureauto cfd?00:20
kanzureyou mean the one about not having to solve nasty PDEs?00:20
Geneyeah00:23
kanzurethat's not too much of a problem. it's still possible to do simulations on millimeter scale systems.00:25
kanzure(using nasty equations)00:25
Genewell Kanzure I tis easier just to do the math01:33
Gene*it is01:34
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fennheh that guy steve langford resells harbor freight crap on his website at a markup08:00
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kanzurehm, I should probably get around to doing a writeup of my sharpie experiments to send off to diybio.09:09
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kanzurefenn: any brilliant ideas on actuation in my mf sharpie devices?09:14
kanzurethermal gradients? blowing air through a straw? gravity-only? pneumatic? laser-based (where am I going to get that type of laser anyway?)?09:15
kanzurefennetic.net seems to be down.09:53
Geneelectricity09:55
Genesee water going uphill in my bookmarks09:56
kanzureI guess you could add salt to the water, and then just attach some wires at the input, and wires at the output09:56
GeneNO09:56
Genethat's not how it works09:56
kanzureno?09:56
kanzurehrm09:56
Geneit could work that way though09:56
kanzure(too bad you can't detect a single nucleotide (0.33 nm diameter sphere, roughly) with a laser pointing at a 0.1 mm bubble)09:58
kanzurehttp://nanoarchitecture.net/article/all-terrain-fluids-move-uphill09:58
Genedang09:58
kanzure401 unauthorized09:58
Geneyeah it's broken09:59
Genedamn09:59
Genehad a nice way for moving fluid in any direction09:59
kanzurehttp://web.archive.org/web/*/http://nanoarchitecture.net/article/all-terrain-fluids-move-uphill09:59
kanzurenope, no good.09:59
Genedamn10:01
Genelook up droplet microfluidics10:01
kanzureI have been.10:02
ybitgoogle cache: http://74.125.47.132/search?q=cache:9PhDDUJXzy4J:nanoarchitecture.net/article/%3Fc%3DNEMS--MEMS+http://nanoarchitecture.net/article/all-terrain-fluids-move-uphill&hl=en&ct=clnk&cd=1&gl=us&client=firefox-a10:09
ybitnot sure how much of it you wanted, didn't really look around10:09
ybitit's more than a 401 though :)10:09
Genethere we go that's what I'm talking about10:11
kanzurethe paper: http://www.rsc.org/Publishing/Journals/LC/article.asp?doi=b801516c10:13
kanzurevideo: http://media.rsc.org/ChemistryWorld/Wheeler_ATDA_movie_1_75_Mb.mov10:13
kanzurehttp://www.rsc.org/Publishing/ChemTech/Volume/2008/05/uphill_droplets.asp10:13
kanzurehm, electrodes. meh.10:13
fenni dont know what you mean "actuation"10:36
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kanzuresometimes the bubbles just sit there.11:10
katsmeow-afkhmm,, http://heybryan.org/books/papers/Liquid%20Film%20Motor.pdf seems to imply a Tesla platter array with electrical fields on the platters could make a motor possible, but there's no mention of losses in the pdf11:25
kanzureare you actually reading through my paper archive? :)11:25
* katsmeow-afk looks innocent11:26
kanzureno, it's a good thing :)11:26
kanzurebtw, I posted to diybio and OM re: sharpie microfluidics for anyone interested.11:26
kanzurehttp://groups.google.com/group/diybio/msg/1197606e3c3dc43911:26
katsmeow-afki figure you gave me the url for a reason :-)11:26
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katsmeow-afkthe paper smells a lil like mhd , but it's thin film, which made me think of the tesla platters11:27
kanzurebtw, it's a recent paper11:28
katsmeow-afkif the rotation is centeres just off the platters, between platters, then one side of the swirl will be pushing against the space tween the platters11:28
kanzurejust got on slashdot, you might find some good comments in there11:28
katsmeow-afkyou may have slashdotted yourself on purpose?11:29
kanzurewhat?11:29
kanzurewell, it's happened before (with makezine)11:29
kanzurebut no11:29
kanzurethe paper is hosted on arxiv or something11:29
katsmeow-afkah, k11:29
kanzureoops, I'm sorry, this is the recent paper: DNA_sequencing#Microfluidic_DNA_sequencing11:30
kanzureerm11:30
kanzurehttp://heybryan.org/books/papers/Liquid%20Film%20Motor%20-%20part%202%20-%20Rotating%20Electrohydrodynamic%20Flow%20in%20a%20Suspended%20Liquid%20Film.pdf11:30
kanzurethat's the one that has recently been on slashdot.11:30
kanzuresay.. what if we just grew algae in bubbles?11:36
katsmeow-afkok with me :-)11:36
kanzureand then the doubling time would be used so that we know that after a certain point, there should be a big ratio of algae to water within the bubble,11:36
kanzurewhich counts as 'concentrated'.11:37
kanzure(but then what about all this "big bulk algae growth" shit and the many acres of land we've bought? ugh)11:37
katsmeow-afkbut you don't know that, based only on time11:37
kanzuretrue.11:37
kanzureLEDs? :)11:37
kanzureOD680 or something.11:37
katsmeow-afkand food and waste removal,, as well as the actual light distribution11:37
kanzureblah11:38
kanzurehrm.11:38
katsmeow-afka lot of devices have been built to make alge do what we want, for hydrogen or sugar production, many didn't work11:38
kanzureour problem is filtering.11:39
katsmeow-afklike, how deep did light penetrate, and did we kill the stuff when mixing it, etc11:39
kanzureso we're fabricating some filters at the moment.11:39
kanzurebut growing it in spatially confined regions might be quicker.. need to test it I guess.11:39
* kanzure goes back to his physics lab homework. 11:40
kanzurehow does error propagation work? if I have a time and a plus/minus error (standard deviation), how do I propagate that into the calculation of velocity?11:40
* katsmeow-afk looks clueless11:41
kanzurefor instance: delta t = 0.423 +- .003, distance = 7.6 +- .2 cm, and apparently velocity from this is supposed to be 18.0 +- .6 cm/sec, but the max I'm able to find is 7.8/.420 which is 18.570, how is it +- .6 ?? am I doing something wrong?11:46
* katsmeow-afk looks *seriously* clueless11:46
fennmultiply the error percentage11:47
kanzurewhat?11:47
fennman wikipedia is so bad for math explanations11:48
fenni get 1.8 +- .06 cm/s11:50
fenner, sorry add the error percentages11:50
kanzure18.6 > 18.570, where 18.570 is 7.8/.420 (the biggest value that is possible within those error ranges)11:51
fennyes i understand11:52
kanzureso what percentages are present here?11:52
fennoh shoot i moved the decimal place11:52
fennits actually 17.966903 +- 0.5978611:53
kanzureexplanation please :(11:54
fenni think this is just rounding errors11:54
fenn18.564763 vs 18.57142911:55
kanzureis my method of finding the maximum ratio (i.e., 18.570) good for propagation of uncertainty into velocity?11:55
kanzuremaximum ratio would set the upper limit, and the minimum would set the lower value.11:55
kanzureand then how would I find the base value? i.e., 18.0 in this case?11:55
kanzurejust whatever's in common I guess?11:55
kanzurebecause I'm actually doing a calculation where distance=127 mm, and delta time is 0.4759 +- 0.046959 sec, so I get 242.90 and 296.08 m/sec, so I need to somehow represent this.11:57
kanzureI guess it's 269.49 +- 26.59011:57
fennwhy didnt you use the real numbers the first time12:01
kanzurebecause the first time I had feedback from the lab manual book12:01
fenni think the lab manual did it wrong (0.2/.003)12:02
* fenn squints at his numbers12:03
fenni should mention that today is probably not my best math performance ever12:04
kanzurewhy's that?12:04
fennexcess blah12:05
fennwhat's uncertainty on distance?12:05
fennand what's the required precision? or do they just want the "right answer"12:05
kanzurewell, it was recorded on a mm scale12:06
kanzurethe "right answer"12:06
kanzure(the right method)12:06
fennbah12:06
fennchicken slop12:06
fennanyway, add together the absolute uncertainty12:06
fennhaha12:06
fennhow do you get +- .046959 anyway? where's that number from12:07
fenni guess mm measurement would be +- 0.5mm (realistically) or +- 0.1 (according to "the rules")12:08
kanzurethe +- 0.046959 is calculated by the standard deviation of 5 different delta t values.12:10
fennbah12:10
kanzure?12:11
kanzurehttp://heybryan.org/spazzing_out.txt just keeping the record straight.12:12
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kanzureoh shit12:12
fenni wouldnt call homework "spazzing out"12:13
kanzurewhich one is homework?12:13
fennlooks like the cuttlefish are loose again12:13
kanzurenone of those are homework related.12:13
fenn( http://xkcd.com/520/ )12:13
* fenn wonders if it's bedtime yet12:14
fennbtw, for your education, the second "bah" was because finding the standard deviation doesn't mean you know the uncertainty12:20
fennit won't uncover periodic or systematic error, for example, or asymmetrical errors12:21
kanzureso I'm being lied to12:21
fennyes of course12:21
fennrepresenting uncertainty with +- is simplistic too, but it gets the job done12:21
fennif you want to go nuts with statistics, check out openturns (linked by utopiah the other day)12:22
kanzureand R. I need to get around to acting like I care about R.12:22
fennthere ought to be a "physics for engineers" class12:28
kanzurethat's what I'm in.12:28
fennthen why are they wanting the "right" answer rather than the satisfactory answer12:28
fenni mean, in engineering (and in experimental physics) there's a certain required egree of precision for a measurement12:29
fennif you dont have it, the measurements are no good12:29
fennbut they're teaching you that it's ok to just measure whatever as long as you quantify the error12:30
fenni guess it boils down to the fact that you're not ever going to do anything with that measurement12:31
fennexcept write it in a book somewhere12:31
kanzureso if I was to square the velocity (with the +- blah), do I use the same method? add the min and max, divide by 2, and then the "uncertainty" is the difference (max-min)12:31
fennuh, i know there are rules for this somewhere12:32
fennit seems like you'd square the uncertainty12:32
kanzureso if I had 224.31 +- 2.83 mm/sec,12:33
fenni dont know what you mean min and max over two12:33
kanzurethen that would be 0.0503 mm +- 8 mm/sec12:33
kanzurewhich is stupid12:33
kanzureoh, wait, nevermind12:33
fennif one out of a zillion you get a bad value, should that count toward the uncertainty?12:33
kanzureno clue?12:33
kanzureI'm not actually learning anything here12:33
fennheh12:34
kanzurejust trying to not get kicked out of school12:34
fennit all makes a bit more sense if you graph the measurements12:34
fennpresumably you measured distance and time once for each ball drop or whatever it was12:34
fenndid you understand what i mean add the error percentages?12:35
kanzureno,12:35
kanzurethere are no percentages here12:35
fenn0.046959/0.4759 is 9.8674091% uncertainty12:36
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fennand 0.2/127 is 0.1574803%12:37
fennso your final uncertainty is 10.024889%12:38
fenner.. i just made up 0.212:38
fennanyway, now you do 127/0.4759 = 266.8627912:39
fenn266.86279 * 10.025% = 26.752698 mm/s uncertainty12:40
fennmake sense?12:40
kanzure0.4759/127 = 0.003, so .3% uncertainty?12:42
fennlabel all your numbers with units12:42
kanzure0.4759 sec / 127 mm = 0.003, so .3% uncertainty?12:42
kanzureI'm just figuring out how you got 0.157 %12:42
fennok now why are you dividing seconds by mm?12:42
kanzurewhy were you?12:42
fenni wasn't.. i divided mm by seconds to find velocity12:43
kanzure0.2/127 <- you made up 0.2, but I bet you were thinking of the 0.475912:43
fennand mm by mm to find uncertainty percentage12:43
kanzureoh wait. sorry. wasn't reading the backlog.12:43
kanzure0.046959 / 0.4759 comes from where?12:44
fenn0.2 probably should have been 0.5 because of significant digits but i figured you would have written 127.5 if it was halfway12:44
fennbad me, not doing it the "right" way12:44
fenn.046959 is your standard deviation, which is probably the wrong value to use but meh..12:45
fennfrom wikipedia: typically the reported margin of error is about twice the standard deviation12:46
kanzureso on another calculation, I have .56618/.00357 so my uncertainty is 158.59%12:47
kanzureawesome?12:47
kanzurewell,12:48
kanzure.00357/.56618, which is 0.6%12:48
fennok12:48
fennunits are great, use them as much as possible12:54
kanzureyes.12:54
fennif the units match up and you get the wrong answer, you probably forgot some units somewhere (angles are units, despite what the frenchies think)12:54
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xp_prganyone know about devcon?15:42
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genehahaha Diybio has 666 members, we are true evil now20:02
PeerInfinityno, it means you're the antichrist.  christ is the evil one, and that asshole father of his...20:15
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kanzure(08:27:39 PM) Joseph Jackson: what is your take on the factor e farm?22:25
kanzure(08:27:49 PM) Joseph Jackson: i am considering going out there for a bit22:25
kanzureI wonder why not many people replied to my microfluidics post22:44
kanzurekinda disappointing that more people shitted out their ass about GM food bullshit than talked about microfluidics22:44
kanzure"Rain-X makes a beautiful hydrophobic surface." - Treadwell's suggestion22:44
kanzurehttp://www.youtube.com/watch?v=ujnq2D4PtvI superman v. darkseid23:07
genewait a minute? Diybio don't liek GM plants?23:11
genewtf23:11
geneI love GM plants23:11
geneactually had some of those maroon carrots when they first came out 23:12
kanzurepart of the problem is that it is corporate bullshit23:14
kanzureso people get confused23:14
kanzuresome hate the companies, others hate biology and want to upload into robots and live forever on the surface of a neutron star,23:14
kanzureothers are just fucking idiots23:14
kanzure"23:23
kanzureSome glass adhesives cure in UV light. I know I've bought them in hobby stores. IIRC, these are 1-part adhesives  Also avalilable are 2-part (resin & catalyst) adhesives @ auto parts stores for windshield repairs."23:23
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kanzurehttp://www.alpineglass.com/shop/detail/2289 Kemxert Ultraviolet Glass Adhesive 1 oz.   $20.9523:52
kanzureblah, $21 for an ounce?23:52
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