2012-03-30.log

--- Log opened Fri Mar 30 00:00:13 2012
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audylichen what am I watching06:02
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audyheh from muslims to microchips06:03
ThomasEgihttps://www.youtube.com/watch?feature=player_embedded&v=nm0POwEtiqE mother of god... 32bit arm emulation on a 8bit avr, running linux.06:04
ThomasEgiand most scary thing of all. it ever works (ok 2 hours for booting up isnt exarctly fast but, still wow)06:05
archelsThomasEgi: Did you see Linus Torvalds' response to that?06:08
ThomasEgino?06:11
ThomasEgiwhere's it?06:11
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kanzurehttp://dev.opencascade.org/index.php07:14
kanzure"availability of official OCCT Git repository. This opens the possibility for external contributors to directly participate in all steps of OCCT code development "07:14
kanzurehttp://dev.opencascade.org/index.php?q=node/5707:14
kanzurehttp://dev.opencascade.org/sites/default/files/documents/OCCT_GitGuide_V2.pdf07:15
kanzurehttp://git.dev.opencascade.org/gitweb/?p=occt.git07:15
kanzureum.. it seems to only go back to 2012-03-0507:16
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kanzureblerghidjada http://singularityhub.com/2012/03/27/singularity-university-to-incubate-synthetic-biology-startups-with-new-program/08:17
kanzurehttp://consequenceofsound.net/2012/03/album-review-lower-dens-nootropics/08:18
kanzuregah08:20
kanzurebad link.08:20
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kanzure"We found the brain is built from parallel and perpendicular fibers that08:28
kanzurecross each other in an orderly fashion. Finding this kind of simple08:28
kanzureorganization in the forebrain of higher animals was completely unsuspected,"08:28
kanzureIn the current study, Wedeen and his colleagues used diffusion spectrum MR08:29
kanzureimaging  coupled with mathematical analysis of all crossing or adjacent pathways in the brains of08:29
kanzurefour species of non-human primates and in human volunteers.08:29
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kanzure"n 1942, a local boy found a bear cub near Hamadan, Iran. He sold it to the soldiers of the Polish Army stationed nearby for a couple of canned meat tins. As the bear was less than a year old, he initially had problems swallowing and was fed with condensed milk from an emptied vodka bottle."09:08
kanzure" The bear was fed with fruits, marmalade, honey and syrup, and was often rewarded with beer, which became his favorite drink. He also enjoyed smoking and eating cigarettes"09:08
kanzure"He enjoyed wrestling and was taught to salute when greeted."09:08
kanzurehe is the most interesting bear in the world09:09
cluckjhe doesn't always eat cigarettes, but when he does, he prefers menthols?09:22
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chris_99where's that from kanzure09:41
kanzurewikipedia.09:42
kanzurehttp://en.wikipedia.org/wiki/Wojtek_(soldier_bear)09:42
chris_99cheers09:43
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kanzurehi archels09:48
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kanzurehi nmz78709:56
kanzurewhat is nathan-think o.o09:57
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nmz787yo09:57
nmz787that's my laptop hostname09:57
kanzuredelinquentme: sup09:58
delinquentmeshitty generator HTML09:59
kanzurenmz787: did you see this the other day? http://singularityhub.com/2012/03/27/singularity-university-to-incubate-synthetic-biology-startups-with-new-program/10:01
nmz787no10:03
nmz787its alright10:03
kanzurea little weird that they are comparing themselves to ycombinator so soon..10:03
nmz787the whole SU crowd still seems like its geared towards upper middle class and lower high class folks10:03
nmz787at least with ycombinator its all software10:04
nmz787which doesnt req any $10:04
nmz787and they don't have crazy "grad" programs10:04
delinquentmeso yeah kanz we need a smarter way to do this10:06
kanzurewhat's the problem?10:06
delinquentmeso publishers will use whatever HTML hacks they can to get presentations to look good10:07
kanzureyep.. and often it is bad html10:07
delinquentmeacceptable , whatever10:07
delinquentmeyeah exactly10:07
kanzurepretty terrible isn't it?10:07
delinquentmeand coming up with extensible ways to make sense of that10:07
delinquentmeyeah its not quite code10:07
delinquentmethe big indexing companies probably have a decent system10:09
kanzure.. that you will never, ever see.10:09
nmz787i hate lab reports10:11
nmz787i was thinking last night, i might not be much of a 'scientist'10:11
nmz787well i guess i follow the scientific method10:11
kanzurelab reports => take some pictures, paste some graphs together, throw it into the same folder?10:12
nmz787unfortunately, no... typed up shit with loads of calculations for boring experiments10:12
kanzurei think most people just have their undergrads do the boring experiments10:12
nmz787i just wish training wasn't so damn boring10:12
delinquentmekanzure, its represented right there on their website10:13
nmz787if i was doing DNA synthesis calculations, itd probably be pretty cool10:13
kanzurewhat was this report for/about/what?10:13
nmz787extracting mandelic acid from water using octanol10:13
nmz787and reporting the distribution coefficient10:14
nmz787which is how efficient the solvent is at pulling the solute out of the other solvent10:14
nmz787and showing that le chateliers principle holds true10:15
nmz787i.e. multiple small extractions are better than one big extraction10:15
nmz787and then i'm in some 1st year chem class10:15
nmz787last week we used pH indicators in a bunch of solutions, and eyed the color10:16
kanzurei'm pretty sure i did that in high school o_o10:16
nmz787then tried placing an unknown in correct order between pH standards10:16
nmz787earlier we calibrated a pH meter10:16
nmz787then tested an unknown with it10:16
nmz787then made up a buffer solution of a specific target pH10:17
nmz787whats worse is coming in the next few weeks10:17
nmz787...10:17
nmz787using 20 year old (at least) spectrometers10:17
kanzuredid you ask if you could use your own spectrometer10:17
nmz787where you have to change the wavelength and re-blank each time10:17
nmz787my spectrometer is still in pieces10:17
nmz787:/10:17
n_benthadidn't someone make a spectrometer mod for an iphone?10:18
nmz787:/10:18
nmz787prob in university10:18
nmz787but yeah if i recall it was low res, and didnt do UV10:18
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nmz787hah10:23
nmz787pretty sure i got this book a few months back at goodwill for like $410:23
nmz787http://www.ebay.com/itm/Fourier-Transform-Infrared-Spectrometry-Chemical-Analysis-A-Series-of-Monogra-/370591067191?pt=Non_Fiction&hash=item5648f2ec37#ht_1827wt_127010:23
nmz787$157 on ebay10:23
chris_99yeah they did n_bentha10:30
chris_99using a diffraction grating in front of the camera10:30
nmz787this is what i'm expected to use the next few weeks10:31
nmz787http://www.ebay.com/itm/Spectronic-Instruments-Spectronic-20-Model-333182-Spectrophotometer-/251029092883?pt=LH_DefaultDomain_0&hash=item3a727ffa13#ht_500wt_128710:31
chris_99i need to make/find one that will do IR10:31
delinquentmelulzzz10:34
delinquentmefuck this.10:34
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nmz787i love the internet10:45
ThomasEgiin soviet russia.. internet loves you10:48
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sylph_makoI always listen to Davis's rendition of 'Round Midnight on repeat when I'm feeling noir.11:05
kanzurejebba: yo :)11:40
kanzurenmz787: what about the tape/casting method shown here? http://hackteria.org/wiki/index.php/DIY_Microfluidics11:41
kanzureoh they have a mini laser cutter setup. hrm. http://www.youtube.com/embed/QOEMFQPaNEY11:42
kanzurehttp://hackteria.org/wiki/index.php/DIY_Micro_Laser_Cutter11:43
kanzure"tep by step instructionon how to build a small DIY laser cutter from two CD or DVD drives and a laser diode extracted from a blue-ray player or as in this case a 445nm diode form a DLP projector. Such a laser can be found on ebay (1.5-2W 445nm Blue Diode in Module W/Leads & Aixiz Glass) for about 50$ including appropriate housing (Aixiz) and lens "11:43
kanzure"The cutting area is about 45 mm x 45 mm."11:43
kanzurenot sure what the beam size is11:44
jebbawe're going to use openmanufacturing.com, almost certainly, as a website to sell MiniMaxes to businesses11:46
jebbaminimax is http://www.alephobjects.com/photos/printers/minimax/2012Q1/1.0/    Bill of Materials:  http://www.alephobjects.com/hardware/bom/2012Q1/MiniMax_BOM_PL.ods    Prototype:  http://www.alephobjects.com/photos/printers/minimax/2012Q1/prototype-2/11:46
jebbakanzure: can you read that ok?11:46
kanzurejebba: yes.11:47
kanzurehere's a video of their operational chip11:50
kanzurehttp://www.youtube.com/embed/0T-h4dtcCDI11:50
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kanzurethere's a swiss mechatronic art society? http://www.sgmk-ssam.ch/12:00
kanzurehow are they handling all the fumes from that cutter?12:06
delinquentmeits switzerland12:12
delinquentmethats what they breathe12:12
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nmz787that laser cutter did a pretty rough job12:23
nmz787works for sure tho12:23
nmz787my opinion is that it needs a good amount of refining to become useful for microfluidics12:24
kanzurei don't know what magnification the video is at12:24
kanzureis that even micro?12:24
kanzurelooks like no- it's probably just some webcam pointed at it12:24
nmz787from the looks of the cutouts, they aren't using good motor control12:24
nmz787the edge is pretty jagged12:24
kanzuregah where did this come from12:26
kanzurehttp://www.linkedin.com/groups/Using-laser-micromachining-Microfluidics-713657.S.8840673112:26
nmz787interesting12:31
nmz787 Bubble trapping is usually a result of filling too fast, and can be minimized by filling the dry channel with CO2 gas, which will dissolve in water after the channel is full..... 12:31
nmz787i like that trick12:31
nmz787most of the complaints are solvable with a custom cutter12:32
nmz787which doesn't yet exist for a microfluidics market12:32
nmz787that's actually an idea I've had for a whil12:32
kanzurepretty weird. i don't understand why they don't build one in-house?12:32
nmz787ppl are not good are interdisciplinary stuff12:32
nmz787as far as i can tell12:32
kanzurei mean, if the laser cutter they currently has, physically *does not work* then shouldn't they be motivated to uh fix it12:33
kanzureok a reasonable explanation12:33
kanzure*have12:33
nmz787biologist "hey i want to do X", engineer "we can use microfluidics", laser tech "our shit doesn't do what you want", biologist "well we better get a million from NIH to do it all with lithography, cause that's whats advertised"12:33
nmz787instead of paying me $10k to develop something that's right for the situation12:34
nmz787which would not only work for their purposes, but could also be a business spin-off12:34
kanzurewhere do these rough edges come from?12:35
nmz787if the laser is pulsed... could be the duty cycle of that12:35
kanzurebeam staying too long in one place, heating the edge of the cut?12:35
kanzurehm.12:35
nmz787there is some of that too12:35
nmz787but also bad motor control12:35
kanzureright12:35
nmz787people using stepper motors without microstepping the hell out of it12:35
nmz787(i've seen 256 microstepping controllers, but not more)12:36
nmz787i guess ideally you'd want analog control/motors12:36
kanzurehow would multiple layers work with lasered pdms?12:37
nmz787but then another problem is these laser cutters are meant for hobbyists and macro-professionals12:37
nmz787so they are belt driven12:37
nmz787so speed/resolution is based on the gear ratios12:37
nmz787i would use a 1/4 40 screw12:37
kanzureoh for layers i guess you just bond multiple chips together12:38
nmz787with that per turn you get 15 microns per travel12:38
nmz787common steppers are something like 180 steps per turn12:38
nmz787so add microstepping for smaller features/smoothing12:38
nmz787and its a system thats tuned for micro work12:38
nmz787also excimer lasers are probably the best to use, but also most expensive12:39
nmz787they're UV so they really pack a punch and vaporize/combust/plasmasize the substrate12:39
nmz787hopefully so much that its all gas, so no redeposition12:40
nmz787alternatively I've thought of running the whole rig under a vacuum12:40
nmz787vs most people apply compressed air/argon/nitrogen at the cutting area12:40
kanzurei forget, did you hate screw valves?12:40
nmz787to hope to blow particles away12:40
nmz787umm12:40
nmz787depends on what they're for12:41
nmz787they work good for the water faucet12:41
AdrianGwhat are good activating pharmaceuticals12:41
AdrianGbesides stimulants, wellbutrin, and modafinil12:41
kanzure*racetams?12:41
nmz787i dont think wellbutrin is activating12:42
nmz787more of a downer/stabilizer IMO12:42
nmz787makes you "butt" "well"12:42
nmz787caffeine, theobromine, cocaine, amphetamines, ephedra12:43
nmz787i guess those are all stimulants12:43
nmz787:P12:43
kanzurenmz787: pdms pressure valves on a second chip that we bond to the first, don't seem like they would line up precisely12:44
kanzuremaybe we could do some measuring magic where we do some markings and if they optically align in some magic way we're sure we have precise alignment of 2 chips12:44
nmz787yeah we'd have to develop a process to register things well12:45
nmz787but its not impossible12:45
nmz787actually i g2g12:46
kanzureseeya12:46
nmz787have some stuff i need to rasterize and try cutting with the laser cutter12:46
nmz787also gonna try a simple registration idea i had12:46
nmz787so I can rasterize the front and back of the cut item12:47
nmz787(earlier i meant i had to vectorize stuff)12:47
nmz787lata12:47
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thylanehttp://www.wired.com/underwire/2012/03/vernor-vinge-geeks-guide-galaxy/all/113:20
thylaneoh shi--13:23
thylanewatch this, hplus13:23
thylane[16:20] <parso> I'm  very surprised that the Technological Singularity never gets any lip service in this channel13:23
thylane[16:21] <Nietzsche__-> what do you mean by 'Technological Singularity'13:23
thylane*facepalm*13:23
kanzurewhat channel?13:24
thylaneit's on a different network entirely13:26
kanzuresupplemental material for that 'grid' article about human brain organization:13:29
kanzurehttp://www.sciencemag.org/content/suppl/2012/03/28/335.6076.1628.DC1/Wedeen-SOM.pdf13:29
AdrianGthx13:29
AdrianGso our brainz r gridz.13:29
AdrianGracetams arent very activating tbh13:30
AdrianGin my experience13:30
* _0bitcount is reading "Abundance" by Peter Diamandis and enjoying it. Anyone here read it?13:37
kanzurenot yet, but i assume it's a rehash of paul's content: http://pdfernhout.net/13:38
_0bitcountSo there are more people seeing these technological trends? cool!13:39
kanzurepeter is definitely not the originator of such ideas :p13:40
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Steel20bit: I did some consulting work on it13:42
_0bitcountkanzure, OK. Anyway his Singularity University looks like is going to do a lot of good.13:42
Steel2people here have Feelings on singu :P13:43
Steel2kanz, did you ever get access to the lab there like you wanted?13:43
kanzure_0bitcount: SU charges $25,000 for a 6 week class where my friends stand up and lecture on vague terms about things13:43
kanzureSteel2: no13:43
kanzureSteel2: SU doesn't have a lab anyway13:43
Steel2ah, I thought you were trying to do something like that...13:44
kanzureyes, well, lots of people do false advertising13:44
Steel2one of the san fran facilities you were trying to get access to their lab space and considering moving there13:44
kanzureSU is no different13:44
Steel2you read the SENS annual report?13:44
kanzurepartially13:44
_0bitcountSteel2, kanzure, sorry to hear that. I suppose that different approaches are possible, similar to the different views inside the Free Software/Open Source communities.13:45
kanzurenot sure what they are blowing $1500000/year on13:45
kanzure_0bitcount: SU hasn't really supported open/free software much13:45
kanzureor open/free hardware13:45
Steel2hah, even in this room there are a lot of disagreements between methods13:45
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kanzurethey were also very disinterested in a recent open hardware project pitch i gave them (very angry that i wasn't talking about IP or patenting things, etc.)13:45
kanzure_0bitcount: i take it you'r not an actual open source programmer..?13:46
_0bitcountSteel2, competition is supposed to be a good thing. Isn't it? ;-)13:46
Steel2you need to be achieving things for competition to be worthwhile :P13:47
_0bitcountkanzure, I am definitely towards Free Software views about technology.13:48
Steel2_0bitcount, what do you do occupationally/skill wise?13:48
_0bitcountSteel2, electronic technician, electrician, Free Software advocate and advance user, tinkerer :-)13:49
kanzureanalog?13:49
Steel2awesome13:49
_0bitcountkanzure, used to be. Now shifting to digital and software.13:50
_0bitcountI am sorry if my mention of SU annoys somebody here. They were my first contact with all these Singularity, exponential tech. Anyway, some of their videos are inspiring for a newbie like me.13:51
kanzurenobody said it was annoying13:52
kanzureit's inspiring, but it probably doesn't teach you much13:52
kanzurehere are some other videos:13:52
kanzurehttp://diyhpl.us:9001/13:52
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_0bitcountkanzure, cool. Thank you.13:55
_0bitcountI hope they all run under gnash.13:56
kanzureprobably not13:59
kanzureasshats keep uploading videos to youtube and other services13:59
kanzureinstead of uploading the original files13:59
Steel2if only they'd do both14:00
_0bitcountThen I'll use Flash. Not that I like it, but if the video has some teaching possibilities...14:00
archelskanzure: I just read the brain connectivity article, it seems pretty solid14:05
Steel2the grid one?14:05
kanzurearchels: i've only looked at the supplementary material, haven't looked at the paper yet >_<14:05
archelsyes14:05
archelslots of pretty pictures in either :D14:06
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Mokbortolan_http://www.wired.com/images_blogs/wiredscience/2012/03/rainbow-brain-map-science-aaas.jpg15:14
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AdrianGlew;15:26
AdrianGkewl15:26
thylanehttp://www.wired.com/images_blogs/wiredscience/2012/03/rainbow-brain-map-science-aaas.jpg15:31
thylanethe blue and purple-white  connections are pretty obvious15:31
thylanethat's how the forebrain  (prefrontal cortex)   sends command signals to the corpus collosum15:32
kanzure"command signals"?15:32
thylanethe PFC is the executive center of the brain15:35
kanzure"executive"?15:36
thylanethat is the part that tells you how to do things.  Walk.   Use a fork.  Ride a bike.  Type on IRC15:36
kanzurei think you are making shit up15:36
kanzurewhat is a "command signal"? is it a sparse signal?15:36
thylanethe command signal means something relating to doing an action with the body15:36
kanzureok.. so that could be any sort of action potential15:36
kanzurewhy not just say action potential :(15:36
Steel2@Kanzure: He's not making shit up, he's just using psych terms instead of neuroscience terms15:37
kanzureSteel2: that's like mixing mythologies heh15:37
thylanebecause  many signals in the brain are not related to performing bodily action15:37
kanzureok, so the signal between neurohormone glands in the brain isn't a command?15:37
kanzurebleh15:37
thylaneI'm making a pretty clear statement here.15:38
thylanehttp://www.wired.com/images_blogs/wiredscience/2012/03/rainbow-brain-map-science-aaas.jpg15:38
kanzurepathways?15:38
kanzurei was only pointing out that your choice of words was insufficiently descriptive, that's all.15:38
thylanethe blue and purple-white  "highway"  of connections from the  PFC to the Corpus collosum are  specifically there for  complex bodily movement.15:38
kanzuredon't take it personally.15:38
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thylaneI know enough neuroscience to draw arrows on that diagram  showing how the signals are flowing15:43
kanzureah. have you considered learning more?15:46
kanzurehttp://diyhpl.us/~bryan/papers2/neuro/ is a good start15:46
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kanzurehi deep-fried-art15:59
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ThomasEgi... i totaly miss-read that name by skipping most of the middle part..16:06
nmz787deep-fart?16:07
jrayhawkhaha16:08
kanzurenmz787: let's put together the specs for the laser16:09
kanzureor write down, in some document, the optics i'd be ordering for a refurbished laser cutter16:09
kanzurea custom system is sounding like the better option16:09
deep-fried-arthey kanzure16:13
nmz787kanzure: wait, so add optics to existing, or DIY all the way?16:15
nmz787kanzure: I think there are enough gantry plans out there that the all-ours method is the right way16:15
nmz787the optics should be quite similar in either case16:16
kanzureok. that sounds fine to me.16:16
kanzurei hate most software for commercial laser cutters anyway16:16
nmz787so for the additional effort we know we'll get hella good physical resolution16:16
nmz787do you know g-code?16:16
nmz787i dont16:16
kanzuresorta16:16
kanzurefenn does. i can force him to write some.16:16
kanzureor we can use gcode generators16:16
nmz787well16:17
kanzurereplicatorg? there's probably something better16:17
nmz787ok16:17
kanzurepycam16:17
nmz787stock gen maybe OK, but we may want things to route in a certain way16:17
kanzuremy microfluidics library should do svg and gcode output anyway.. otherwise it's useless16:18
kanzureah i see16:18
nmz787:P16:18
nmz787the full spectrum laser software has a really weird routing generator16:18
nmz787it jumps all around and doesn't make sense to me16:18
nmz787so whatever they're doing, its wrong!16:19
nmz787lol16:19
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kanzure"I once built a megawatt UV laser with an output beam diameter of about an inch.16:20
kanzureWe used a 12 inch astronomical telescope as a beam expander to limit the divergence, so we16:20
kanzurecould try to hit the laser reflector that Apollo 11 left on the moon. Counting the photons we16:20
kanzurereceived about 3 seconds later, we got better than 80% confidence that they were our16:20
kanzurereflected photons."16:20
kanzuresimon is now a bad ass16:20
nmz787whaa16:20
nmz787?16:20
nmz787i didnt see that16:20
nmz787nice16:20
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kanzurehi wudles.16:29
kanzurenmz787: but still. we should draw up specs. i would like it to run linux.16:29
kanzureor possibly emc16:29
wudleshi there kanzure.16:29
Urchinhi16:30
Urchinwhat's supposed to run linux?16:30
nmz787all sorts of programs are supposed to run linux16:30
nmz787on linux*16:30
UrchinI mean, in this context16:31
kanzurelaser cutter.16:31
Urchinnever dealt with them16:31
kanzureyou sir are missing out on life16:31
kanzureyou have not experienced true joyful science without laser blasting the shit out of something16:31
nmz787i'm gonna cut some monkeys later with a laser cutter16:31
nmz787SVG monkeys16:32
kanzurenmz787: have you used emc ever?16:32
nmz787nah16:32
kanzurehttp://www.linuxcnc.org/index.php/about16:32
nmz787see it16:32
nmz787heard of it16:32
nmz787looked at the site b416:32
kanzure"It can simultaneously move up to 9 axes and supports a variety of interfaces" hahah16:33
kanzure9 axes.16:33
kanzurescrew all this propeller crap :P16:34
kanzurekidding. microcontrollers have a time and a place.16:34
nmz787geez16:35
nmz787where u seeing propeller stuff?16:36
kanzurei was joking, but that diy laser cutter from hackteria was using, uh, arduino or something16:36
nmz787yyyyeeeeaaaahhhhh16:37
nmz787.... surrreeeee16:37
nmz787arduino has its place16:37
kanzurewasn't it?16:37
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kanzurei'm sure arduino can work ok in that scenario16:38
nmz787but for scientific equipment, you gotta get into some real C or asm16:38
kanzurebut i don't know why everyone is opposed to just having linux plugged into your steppers16:38
nmz787well its bigger16:38
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nmz787its not realtime16:38
kanzureit is realtime16:38
nmz787rt linux is16:38
nmz787but thats not debian16:39
kanzurejrayhawk: ping?16:39
nmz787debian isn't realtime, you can't make determinative hardware operations with debian, etc16:39
nmz787i.e pulse pin 0 on parallel port every microsecond, on the microsecond... with only thermal effects causing variation16:39
kanzurewell. submicrosecond management sounds a little exotic for linux.16:41
jrayhawkLinux has had hard realtime for years.16:42
nmz787but its a diff kernel, right?16:42
nmz787i.e. not torvalds16:42
nmz787?16:42
jrayhawkOnly if you want exotic realtime.16:42
kanzurehttp://pengutronix.de/software/linux-rt/debian_en.html16:42
kanzurewhat counts as exotic16:42
nmz787yeah whats the diff?16:43
jrayhawkThere are various tradeoffs between efficient scheduling an realtime behavior; this is outside of my wheelhouse but let me see if I can dig up some docs...16:43
nmz787hmm16:43
kanzure"The worst case time between the moment a hardware interrupt is detected by the processor and the moment an interrupt handler starts to execute is under 15 microseconds on RTLinux running on a generic x86."16:43
nmz787basically the way i see it is, in a lot of cases you don't need a scheduler16:44
kanzure"A RTLinux periodic task runs within 25 microseconds of its scheduled time on the same hardware."16:44
nmz787or if you did, sometimes you can break that functionality into a few pieces of simpler hardware16:44
kanzure.. within 25 microseconds?16:44
kanzurethat's 25x worse than your requirement.16:44
nmz787yeah16:44
kanzureoh, microsecond or millisecond?16:44
nmz787this CCD i'm using has a 4mhz clock16:45
nmz787thats a IO switching every 1/8 microsecond16:45
jrayhawk4 millihertz?16:45
nmz787and thats only one of 2 or 3 lines16:45
nmz787no16:45
jrayhawkerrr shit16:45
jrayhawkdurr16:45
nmz787mega16:45
nmz787lol16:45
kanzureMhz16:46
nmz787sry16:46
kanzureIN THIS CHANNEL WE USE PROPER NOTATION FOR OUR DIMENSIONS16:46
kanzurehaha16:46
nmz787prostrates in tears16:46
nmz787*16:46
kanzurehrmm16:47
nmz787but the nice thing about simpler hardware is, yeah, its simpler16:47
kanzurewell, i haven't specifically seen submicrosecond linux16:47
jrayhawkBut yeah, even on really nice hardware, Linux can only context switch 100k-1m times per second16:47
nmz787i really like the propeller... fast, 8 cores, as easy to get into as arduino16:47
kanzureactually when i was going to use a stepper with linux i had an fpga pci card16:48
kanzurefpgas can definitely do submicrosecond switching16:48
nmz787really only downside i see, for most microcontrollable apps, is that it doesn't do floating point math or hardware multp/div16:48
nmz787oh god yes16:48
kanzurebut fpgas have their own set of problems (proprietary design software..)16:48
nmz787oh i mean God16:48
nmz787sry again16:48
jrayhawkhaha16:48
nmz787God is a dimension, right?16:48
kanzuremaybe?16:48
jrayhawkTruth and/or love have dimensionality, so we can theoretically construct a proof16:49
nmz787fpgas are alluring to me, but they're so complex to get up and running... it'd be like a year of hardcore studying and at least a few hundred $ in dev kits or something... finding the right proprietary software thats easy to help you get started16:50
nmz787(for me)16:50
kanzurespecifically i think there's no open source fpga programming tools?16:50
kanzuresomeone in here was complaining about this16:50
kanzurei don't remember the details.16:50
jrayhawkjblake cares deeply about that, you can bug him about the current situation16:51
kanzureanyway! yes i am willing to admit microcontrollers are fine for submicrosecond work16:51
nmz78710 years i bet we can use neural cells on an electrode array for stuff fpgas are doing today16:51
nmz787maybe16:51
jrayhawk10 years i bet we can just order custom ASICs16:51
kanzurei think we can already do that just not cheaply?16:51
kanzureASIC failwhale.jpg generator16:52
jrayhawkYeah.16:52
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nmz787john griessen responds to me really strange sometimes16:58
jrayhawklinux-rt has RMA and EDF implemented, at least...16:58
kanzurei've met john btw. he lives nearby.16:58
kanzurehe makes really great crawfish16:58
nmz787nice16:59
nmz787he jsut replied to me offlist though16:59
nmz787with really weird responses17:00
nmz787almost belittling me17:00
nmz787saying i twisted/ignored most of what he said17:00
nmz787"Off to other things.  lost cause."17:00
jrayhawksome days i am bad at managing my neurochemistry and become very uncharitable17:02
jrayhawkyou might want to wait at least a day before responding17:03
uniqanomaly_some billionaire should create 100s of hacker spaces around the world :<17:03
uniqanomaly_he would be arts patron for science :D17:04
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jrayhawkhttp://www.cs.ru.nl/lab/rtai/experiments/11.EDF&RMA/Experiment-11_oldversion.html has a short description of some of fancier schedulers in RTAI17:13
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jrayhawkoh you're back http://www.cs.ru.nl/lab/rtai/experiments/11.EDF&RMA/Experiment-11_oldversion.html has a short description of some of fancier schedulers in RTAI17:13
nmz787yeah i wasnt plugged in, laptop got tired, er went to slee[p17:14
Steel2uniqanomaly_: someone should put together a modular shopping list for starting hackerspaces17:14
ParahSailinid like to get into fpgas too17:15
nmz787that de0 nano seems like a nice feature set for the price17:15
nmz787http://www.terasic.com.tw/cgi-bin/page/archive.pl?No=59317:16
ParahSailinwow that is pretty inexpensive17:17
nmz787i guess they have some example code too, not sure how easy it is to get into and understand tho17:18
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thesnarkkanzure ping17:24
ParahSailinid like to understand software radio for darknet stuff17:25
thesnarkParahSailin what kind of darknet stuff do you have in mind?17:26
ParahSailini saw a thing for a 24 ghz backhaul system17:26
ParahSailini wanna know how to rip off the design and go pirate with that17:27
nmz787darknet?17:28
kanzurethesnark: pong17:35
thesnarkkanzure check privmsg17:36
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kanzurewhaa private messages! gah17:36
* kanzure checks17:36
kanzureok i'd rather answer that over skype17:37
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kanzureParahSailin: request approved!17:41
kanzurenmz787: john is really friendly and i don't understand why he would send that :(17:41
nmz787kanzure: he's sent me a few emails like this in the past17:42
kanzureweird17:42
nmz787yes17:42
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Vicarioushi18:10
kanzurehello.18:10
kanzurejrayhawk: why don't i have sudo on fairlystable :(18:19
kanzureoh nevermind18:20
jrayhawki am sure whatever i set your password to demonstrated consummate professionalism18:21
kanzureno i just apparently suck at typing long passwords18:23
katsmeow-afk"professionaly speaking, you suck. That's your password."18:23
jrayhawk"butts" and "poop" are more typical18:24
yashgarothwtf how do you know my password18:25
yashgarothbutts1 it is then18:26
jrayhawkhaha18:26
kanzuremad hackers in here18:26
Steel2welp, spending all business hours on campus from now on or I get in trouble18:30
kanzurejrayhawk: what should i distupgrade that vserver to18:33
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kanzurenmz787: speeeeeccscsss are needed for the laz0r18:46
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kanzurehi eudoxia18:46
eudoxiayo18:46
kanzurehow goes it?18:47
eudoxiapretty good18:47
nmz787specs?18:47
nmz787hmm18:47
eudoxiaso what's been going on here lately?18:47
kanzurenmz787: for the diy laser cutter18:48
nmz787kanzure: umm18:48
nmz787kanzure: will take me a few days18:48
kanzureeudoxia: how many days have you been gone? let me think.18:48
Steel2got some new peeps around18:50
kanzurenmz787: okay. but we definitely agree on 1-5 micron target beam size?18:50
nmz787:D18:50
nmz787sure18:51
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kanzurehi delinquentme18:52
kanzuredelinquentme: i'll have some code to show you tomorrow18:52
kanzurein about 24 hours.18:52
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kanzurecan you prepare me a gpg public key so i can add you to a server?18:53
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delinquentmewhy gpg and not just regular public keys?18:58
kanzureer, yes, just regular public key18:58
delinquentmewhat are you setting up?19:01
kanzurescraper task queue, adapter models, orchestration19:01
nmz787http://www.youtube.com/watch?v=geIsWq5xOSE19:02
nmz787sry, i had to19:02
kanzurelegit19:03
kanzurenmz787: you are now assistant professor of keeping it real in ##hplusroadmap19:03
nmz787nice19:03
delinquentme{"Psychology of Religion and Spirituality"=>[{"url"=>"http://www.apa.org/pubs/journals/rel/index.aspx", "rss"=>"http://content.apa.org/journals/rel.rss", "index"=>"http://content.apa.org/journals/rel"}]}19:20
delinquentmehow does that get accessed?19:20
kanzuresome universities have a subscription to APA19:20
kanzurehttp://www.apa.org/pubs/databases/psycarticles/index.aspx19:21
delinquentmei mean w that data format19:21
kanzure"PsycARTICLES® is a robust database offering complete access to the full text of nearly 80 landmark journals in behavioral science and related fields ranging from education, to nursing, to business, to neuroscience."19:21
kanzurehaha "robust"19:21
kanzurei don't see why you are using a list?19:21
delinquentmelike how do I get the url for that element19:21
kanzureit should be: {"Psychology of..." => {"url" => "...", ...}}19:22
kanzurenot {"Psychology of..." => []}19:22
kanzureas it is right now, you would do something["Psychology of Religion and Spirituality"][0]["url"]19:22
delinquentmeshouldnt i be able to do something like item.sub_item19:25
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kanzuredelinquentme: if you want to do that then install hashie19:32
kanzurex = Hashie::Mash.new({:"hello" => "world"})19:33
kanzurex.hello will be "world"19:33
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delinquentmeok so plain hashes ... give me the nice family["jason"]["name"]19:48
delinquentmeso why would I use json?19:49
delinquentmei need to shave.. SO bad.19:49
kanzureyou would use json because it's better than sending over .sqlite db files20:02
delinquentmebut in this case by json20:06
delinquentmeyou mean a really big hasfile20:06
delinquentmehash file20:06
delinquentmethis pisses me off20:06
delinquentmehttp://fellows.ted.com/profiles/skylar-tibbits20:06
delinquentmethis dude a TED fellow for making fucking "self assembling" blocks20:07
delinquentmeno. like gtfo.20:07
delinquentmehes @ MIT.20:07
delinquentmethat. is.fucking.stupid.20:07
kanzurebeing a TED fellow isn't that hard, it's more about who you know20:08
kanzureat this point, at least.20:08
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kanzuregasp. saurik isn't allowed to have ping timeouts..20:23
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nmz787TED is sponsored by car companies and shit20:27
nmz787a speaker here at RIT told me when he did a TED talk, (golan levin), the speakers met at the airport and were all like, ok we'll share a car20:28
nmz787but each speaker had a sep car, and he mentioned to the driver the car was really quite20:28
nmz787and immendiately a car sales pitch began20:28
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kanzurehaha20:29
kanzurebleh yet another beaming standard http://www.kickstarter.com/projects/ttstam/openbeam-an-open-source-miniature-construction-sys20:42
kanzurewhat happened to makerbeam20:42
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ParahSailindoes seem to be redundant21:05
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kanzurewin 521:35
kanzurekdfljasdjfas21:35
delinquentmekanzure, find gods match for you @ christianmingle.com21:36
kanzurehas anyone memorized his genome yet?21:39
jrayhawkyou might get in the habit of using ctrl-p and ctrl-n and grouping channels by topic so you don't need to go far21:40
kanzurehrmm why is that so slow21:41
kanzureweird21:41
kanzureyeah ok i'll use that21:41
thylanehttp://www.geek.com/articles/geek-cetera/bacteria-is-perfect-for-carrying-nanotech-inside-our-bodies-20120330/21:52
kanzureare you going to implement any of the news articles you keep pasting?21:53
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thylanewhat does "implement" mean in this context?21:59
thylaneYOu mean do this in my garage?22:00
kanzurewell mabye22:00
kanzure*maybe22:00
kanzurebut i mean, what is your goal22:00
kanzurewith reading these articles22:00
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joshcryerWhat's genome sequencing cost these days?22:07
joshcryerI'm seeing it for $4,998 with an 'interpretation' through Knome.com ($3,750 without interpretation).22:08
kanzureknome used to charge >$150,000 just four years ago22:11
thylanekanzure   What would you prefer I do that is more fruitful activity?22:11
kanzurejoshcryer: are you sure that's whole genome sequencing?22:11
kanzurethylane: i am trying to determine what your goals are. entertainment?22:12
thylanekanzure   Knowledge of modern science?22:12
kanzureMost people acquire knowledge of modern science by reading scholarly journals, not pop/news.22:14
joshcryerkanzure, that's what it says on their site, no idea if legit. There's also Complete Genomics that I've found so far, but no pricing that I can see: http://www.completegenomics.com/22:15
joshcryerhttp://www.dailyfinance.com/2012/03/30/gattaca-here-we-come/22:16
kanzurejoshcryer: i know a few people who got their genomes sequenced by knome. but again, not for $5000...22:16
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joshcryerkanzure, how long ago?22:17
joshcryerGenome sequencing costs, as you know, are dropping quick.22:18
kanzurejoshcryer: 2008ish22:19
kanzuresure sure22:19
kanzure$5000 is pretty accessible. i wonder why i don't know anyone getting their whole genome sequenced now.22:19
thylanewill  joshcryer also receive the harsh indictment for not  posting  "scholarly journal"?22:20
joshcryerI deserve one.22:21
kanzureharsh??22:21
kanzureare you paranoid22:21
joshcryerI could just be posting somes sites PR stuff.22:21
kanzurejoshcryer: heh22:21
joshcryerThey say whole seqeuencing but I don't see the catch yet.22:21
kanzurejoshcryer: i think you will learn tremendously more by reading science instead of news articles22:23
kanzuredkfajdfkal22:23
kanzurei meant thylane22:23
kanzurebut i guess it goes for joshcryer too :)22:23
joshcryerAhah, sequence is 'optional.'22:23
kanzureer what do you get if you don't have the sequence?22:23
joshcryer"Our curation team manually updates our annotation database based on your phenotype of interest and project goals, ensuring the inclusion of all relevant research."22:24
kanzureok so it sounds like they might just be looking at single nucleotide polymorphisms22:25
joshcryerWell fuck.22:25
kanzurebut you should call them to check22:25
yashgaroththat and/or exome sequencing22:25
kanzureari j. kiirikki <akiirikki@knome.com>22:25
joshcryerNo on page 4 of their PDF they again state "whole genome sequencing."22:25
kanzure617-528-167222:25
joshcryerbtw I'm interested in a service, who cares about the science behind the thing, $5k is cheap!22:26
kanzurearguably you might have enough utility with just 23andme looking at your SNPs22:26
kanzurebut for some reason i have this irrational bias towads wanting my full genome sequenced22:27
joshcryerI just want it on a USB stick.22:27
kanzureusb sticks are knome's speciality22:27
ParahSailinknome gives you the exome i think22:27
yashgaroththey do say 30x coverage, interestingly22:28
ParahSailinexon-ome22:28
ParahSailinoh so they shotgun seq for 5k, nice22:28
joshcryerComplete Genomics say 40x to 80x but again no pricing.22:28
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kanzureknome gives you a sqlite database22:29
ParahSailinthat you have to assemble?22:29
kanzureit has a few different tables22:29
kanzureone table was reads22:30
kanzureanother table was individual genes iirc22:30
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kanzureanother table was an ordered set of fragments that combine to the genome?22:30
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joshcryerHeh, Steve Jobs had his whole genome sequenced for $100k, we'll be able to get it for under $1000 in just a couple of more years. If there's any doubt about exponential technology curves...22:32
joshcryerkanzure, where are you seeing that, if I may ask?22:33
kanzurejoshcryer: from the .db file i'm looking at22:33
joshcryerNOVA S39E15 Cracking Your Genetic Code came out tonight which is what pipqued my interest in this22:35
kanzureaha22:35
kanzureum have you ever read anything by rob carlson?22:35
kanzurehe's the one that ray cites for all the biotehnology curves22:35
kanzure*biotech22:35
kanzurehttp://www.synthesis.cc/assets_c/2011/06/carlson_cost%20per_base_june_2011.html22:35
joshcryerI haven't read anything by him nope.22:35
joshcryerAhh, glorious. :)22:35
kanzureok well look at the graph and then maybe read his blog22:36
joshcryerThanks22:37
kanzurei guess you probably don't know about 23andme either22:38
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joshcryerI googled it, I'm not really interested in that.22:39
joshcryerI got Cryonics for a faulty genome. :P22:39
kanzurewut?22:40
kanzure23andme reads the point mutations in your genome22:40
kanzureso instead of reading the whole thing, you just read the parts that are probably different or varying22:40
kanzureParahSailin: back me up here22:41
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ParahSailin23andme just has a snp array chip22:41
kanzureright22:41
joshcryerIt's admittedly cheap.22:41
kanzurejoshcryer doesn't know about snps, i think22:41
joshcryerNope22:42
yashgaroththey usually do a special on DNA day if you wanna save money22:42
kanzurebut they are sorta going broke22:42
yashgaroththought they had that google money22:42
joshcryerI mean, I'm not ashamed to admit that a genome sequence's utility for me would be merely novelty.22:43
yashgaroththen I'd recommend you wait a year until it's $1k22:47
joshcryerThat's my thought as well.22:48
ParahSailini want to sequence the black soldier fly genome22:49
ParahSailinand then put a cellulase enzyme from termites in them22:49
nmz787why?22:49
joshcryer^- what he asked22:49
ParahSailinossumness22:50
ParahSailinturn cellulose into insect protein22:50
kanzureare you MAD?22:50
kanzuregood god man22:50
kanzure(the answer better be yes)22:50
ParahSailinand then into chicken protein22:50
ParahSailinand then into me protein22:51
nmz787why not just grow termites?22:51
ParahSailinthey dont really do that well in fed batch reactors22:51
ParahSailinfor one, black soldier flies self-harvest22:51
joshcryerset them loose upon the world!22:51
joshcryer/Crake22:52
ParahSailinthis would be the ultimate composting organism22:52
ParahSailinsave the world's soil22:52
joshcryerand crops?22:53
kanzurelooks like a new ed boyden paper.. http://syntheticneurobiology.org/PDFs/12.03.chow.pdf22:57
kanzure"Genetically encoded molecular tools for light-driven silencing of targeted neurons"22:58
kanzureerr.. a review?22:58
ParahSailini wish people wouldnt waste so much time on open source 3d printers and make a nice open source cnc mill22:59
kanzureed you're going a bit overboard in the acknowledgements section22:59
kanzureParahSailin: there are many options for making a cnc mill22:59
kanzurei guess you did say "nice" heh22:59
kanzurefenn: maybe you can drop some preferred machines22:59
ParahSailinwhat are some good options22:59
joshcryerIMO, arguably more of those projects are on YouTube than 3D printers.22:59
kanzureman, i was so disappointed in my mom when she was about to drop $50k on a cnc machine23:00
kanzureshe didn't believe me that you can buy some for less than $5k23:00
kanzurei should just buy her one23:00
joshcryerOK your mom sounds cool.23:01
kanzureshe's a stripper23:01
joshcryerNot sure if serious now.23:01
yashgarothhahaha23:02
kanzurehttp://lwicustomcabinets.com/23:02
joshcryerHah23:03
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joshcryerYou must use that line a lot.23:04
ParahSailinhm23:04
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kanzurejoshcryer: she uses it more than i do23:04
joshcryerLove those photos of the chests.23:04
kanzuremanly chests23:05
kanzurewait what?23:05
joshcryerHeheh23:05
nmz787so she strips wood of varnish?23:06
kanzurecorrect23:06
nmz787dude when i get a house, get your mom to hook me up with cheap cabinets23:07
nmz787lol23:07
nmz787nah i guess its better to buy local23:07
joshcryerThose are well done, probably not cheap.23:07
kanzurehand crafted at least23:08
kanzurebecause she still doesn't have a cnc >_<23:08
kanzureand here i am hauling around laser cutters and robot arms?23:08
ParahSailinfirst priority is the copper electrorefining cell23:09
joshcryerDo tell.23:11
ParahSailinscrapping pre-83 copper cents23:14
augurso23:44
auguranyone dicking around with this emotiv headset?23:44
kanzureaugur: most recently, Mokbortolan_23:46
kanzuresee also https://github.com/qdot/emokit23:47
--- Log closed Sat Mar 31 00:00:15 2012

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