2013-01-29.log

--- Log opened Tue Jan 29 00:00:13 2013
--- Day changed Tue Jan 29 2013
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kanzureeleitl: know anyone at the German Organ Transplantation Foundation?00:20
kanzureor eurotransplant00:20
kanzurei've been thinking that europe might be sufficiently dense to make a bitcoin-based organ selling operation actually work00:21
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browniescan you people 3d print organs yet?00:30
kanzurewe can 3d print vascularized tissue, somewhat.00:30
kanzureorgans are for quitters, real men just steal other people's organs for profit00:30
kanzurei haven't been able to figure out if livers based on a plastic scaffold are going to appear first or if fully printed livers will happen first00:31
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brownieswhat's the difference?00:31
browniesis a plastic scaffold liver usable as a regular liver?00:32
kanzurenobody knows yet00:32
kanzureor, i mean, nobody has tested a plastic scaffold liver yet because the cells don't live that long in vitro00:32
kanzures/vitro/vivo00:33
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kanzurei expect that the first tests will either be animal implantation or organ perfusion chambers designed to mimic the environment inside the human body00:34
browniesright00:36
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kanzureactually, that might be an interesting test. if a fake organ performs just as well as a real organ inside such a chamber, then you shouldn't be able to tell from measurements in a blind study.01:07
kanzureoh hm. blue brain got $1 billion, not $500 million?01:24
kanzure"Further funding will depend on whether they reach certain milestones within the first 30 months, but over a decade it could total €1 billion ($1.34 million) each."01:25
kanzuremillion?01:25
joehotmillion01:26
kanzurebut what happened to billion?01:27
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archels10^9 euro01:35
kanzurearchels: better send in your application now, yo01:35
archelsyah I don't really know the process by which this huge sum is going to percolate down to actual research groups01:36
kanzurewell, henry will be leading up the attack so i imagine it will be controlled from EPFL01:36
kanzurethere are some names attached to the proposal document so check which labs those guys operate (other than just henry's)01:37
archelsmost likely, but lots of people are going to be looking over his shoulder.01:37
archelsmy professor is the head of the Human Brain Project in NL, I should probably have a chat with him :)01:37
kanzureah, i'm glad i have a mole in the human brain project01:38
kanzureyou will leak me a brain if the emulation works, right?01:38
kanzure... right? :(01:39
archelsfor on the supercomputer in your garage? absolutely01:39
archelscan't keep this sort of thing locked up in a cage, that would be immoral01:39
kanzurewhat do you know about my garage supercomputer01:40
kanzurewho told you01:40
archelsoh I just assumed based on you being in this channel01:41
archelseveryone here has that, right?01:41
kanzureno, a few people in here are shameful enough to just pay for ec2 time01:41
archelsmaking do with homebrew FPGA processors, I could see, but EC2? tsk01:42
kanzurehomebrew asics. FPGAs are much harder to make.01:43
archelswell, off-the-shelf FPGA hardware, custom firmware.01:44
archels(firmware is probably not the right word)01:44
archelswell, companies like Xilinx seem to call it that, but it feels inadequate01:47
archelspaperbot: http://jn.physiology.org/content/early/2012/11/02/jn.00648.2012.long02:06
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/A%20neuro-mechanical%20model%20for%20the%20neural%20basis%20of%20curve%20walking%20in%20the%20stick%20insect.pdf02:06
kanzure"1944 kolff version of the kidney dialysis machine" http://4.bp.blogspot.com/_PB5-El7se4s/SZX0NFK4n1I/AAAAAAAANjw/0H1OzjbU3bA/s1600/kolff+1944+dialysis.jpg02:08
kanzurethat doesn't look like the drum i see on http://homedialysis.org/types/museum02:13
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kanzure"The Jarvik - 7 is a device that is still used today and is claimed to have the highest success rate of any mechanical heart or assist device in the world."02:29
kanzure"Since 1982, more than 350 patients have used the Jarvik 7 heart, and it remains in use today - called the CardioWest total artificial heart as Ownership has changed hands several times, but the device design remains essentially unchanged."02:29
kanzurewait.. what? only 350 patients?02:29
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kanzure" SynCardia claims there are more than 1000 implants of the Total Artificial Heart, accounting for more than 270 patient years of life on this device"02:36
kanzure"According to SynCardia, the longest a patient has been supported with the Total Artificial Heart is 1,374 days (nearly four years) before he received a successful heart transplant."02:37
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* archels wonders if he should use the term 'cybernetics' in communication with srsbiz neuroscientists03:20
kanzureif you want, we could "peer review" your email before you send it03:21
kanzurewe could peer review all over it.03:22
archelsO_o03:24
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browniesi... uh... don't think that's how you use that word03:30
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kanzurebrownies: http://www.urbandictionary.com/define.php?term=peer+review04:17
kanzure"Man, I had to have my essay peer reviewed today and that fucker wrote on my paper that I have a strong thesis"04:18
kanzurebrownies: i seem to be having some caching problems, can you tell me what numbers you see under the calendar? https://github.com/kanzure04:21
kanzureand/or what words are spelled out on the calendar04:21
Coornailalmost an 'E'04:28
eudoxia^04:32
kanzurebonus points to anyone who can figure out what i was trying to write.04:34
kanzurethis deal expires the moment it starts rendering correctly on github.04:34
eudoxiah+?04:36
kanzure-_-04:36
eudoxiaa k?04:36
kanzureeudoxia: hint, try looking at the data to figure it out.04:37
kanzureinstead of embarrassing yourself :)04:38
kanzureeudoxia: this might help save you a few minutes of coding https://github.com/kanzure/streak/blob/teapot/streak.py04:43
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* kanzure sleeps05:07
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eleitlfuck this rocket surgery shit06:33
eudoxia?06:33
eleitltrying to reimport vmware guests from an nfs06:33
eleitlshare06:33
eleitlvmware going fully amnesiac retard on me06:34
eleitland of course windows wants to be activated, natch06:34
juri_ok. wow.06:35
juri_done with my crazy EMR project.06:35
eleitldescribe it, so that we can celebrate, too06:36
juri_20,000 lines of patch.06:36
eleitlopen source?06:36
juri_we added credentialing, emergency form filing, unassigned appointment filing, made the system no longer pop up any windows..06:37
juri_of course.06:37
juri_OpenEMR.06:37
juri_https://gitorious.org/~elishy/openemr/elishys-openemr06:37
juri_master on that tree is 15,000 lines different from mainline.06:37
eleitlCongratulations!06:38
eleitlHow long did it take?06:38
juri_added documentation to many pages.. droped other dead pages, removed some standing security risks..06:38
juri_5 weeks.06:38
eleitlsounds like a lot of work, and it's even in PHP(?)06:38
juri_yepyep.06:38
eleitlyou poor bastard...06:38
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juri_a lot of complicated javascript, as well.06:39
juri_my personal favorites are the scheduling changes (schedule an event without deciding who takes it at scheduling time), emergency event logging, and the javascript routine that from one frame (yes, it still uses frames), injects jquery and fancybox into another frame, then uses fancybox in that frame to pop up a dialog.06:40
eleitldoes the change have to be certified, to be fit for medical applications?06:41
eleitlthis virtual network thing is not a fad06:46
juri_nope.06:47
juri_no certification process.06:47
eleitlthat sounds easy06:47
juri_however, now i need to break it into little pieces, and get it comitted.06:47
eleitlno actual people get hurt?06:48
juri_we've done a good job making the software better here, so it should result in better running medical offices.06:48
eleitlthere's a reason medical facilities require certification06:50
eleitlany bug could cause a major regression06:50
juri_the software they run is certified. we just make it better.06:50
eleitlok, so somebody takes your changes, and tests and certifies that. No problem there.06:50
juri_thats not quite how the certification process works.06:51
juri_our changes will not get a test for certification. the ONC does not require that.06:51
eleitlHow does it work?06:51
juri_they require regular baseline certifications of the program as a whole, but that does not effect adding new features, or closing security bugs.06:51
eleitlNo idea how things are done down here.06:52
eleitlwe're actually going to do medicine in our group, it's just our clients won't be able to complain06:52
eleitlnobody in the dewar has sued anyone for malpractice, yet06:53
eleitlwhich, of course, doesn't absolve one from the need to do things properly06:53
juri_OpenEMR has been certified for use up here, and is used all over the place. it serves as a good baseline.06:54
juri_I'm glad to have this project done. i've already got an image recognition project to complete for a banking company in the pipeline...06:55
eleitlwho's paying for your work?06:55
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juri_elitl: i'm subcontracting, so i don't know the 'actual' customer.08:35
eleitlBut you do get paid, it's not volunteer work?08:37
juri_its a little bit from category A, a lot from category B. i got paid for 1 week of work, but worked 5, to do a good job of it.08:45
brownieskanzure: haha09:08
brownieskanzure: still see 4780 days there09:08
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archelsTelomerase Reverse Transcriptase Synergizes with Calorie Restriction to Increase Health Span and Extend Mouse Longevity09:12
archelspaperbot: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.005376009:12
paperboterror: HTTP 500 http://diyhpl.us/~bryan/papers2/paperbot/Telomerase%20Reverse%20Transcriptase%20Synergizes%20with%20Calorie%20Restriction%20to%20Increase%20Health%20Span%20and%20Extend%20Mouse%20Longevity.pdf09:12
nmz787chris_99: hi09:16
chris_99hey, oh the other day i was gonna ask if you'd noticed any longish image sensors around 8cm on your travels, but managed to find one on Mouser for £3009:20
chris_99:)09:20
archelsAre there any efforts underway to just breed mice for longevity, and see how far you can go?09:26
nmz787ahh, the long one09:27
nmz787ahh the long one's I've seen come out of flatbed scanners, chris_9909:27
chris_99yeah the problem is i think they're hard to get hold of09:28
chris_99i contacted a company about that and they where charging $10009:28
chris_99for a CIS one09:28
chris_99not even a CCD one09:28
nmz787huh, I think I've seen then for around $30 or $40 USD09:53
nmz787chris_99: http://www.toshiba.com/taec/Catalog/Line.do?lineid=900041&familyid=90003909:53
chris_99i couldn't seem to find the sensor lengths on that page, or am i being very dumb09:54
chris_99also is there a mainstream site like Mouser/Farnell/Digisomething that sells them09:56
nmz787chris_99: $14 but only 5.5cm http://www.eureca.de/pdf/optoelectronic/sony/ILX553A.PDF09:56
nmz787that's a commonly used one09:57
chris_99http://uk.mouser.com/ProductDetail/ams/TSL208R/?qs=sGAEpiMZZMunxn%2f4XiYBQjMStQ7%2faj6jpnSvRJ2RwP0%3d is what i found09:57
chris_99~8.8cm09:57
nmz787no but you can get a feel based on pixel size and num pixels09:57
chris_99true09:58
chris_99i couldn't seem to find anyone that sold the toshiba ones really though09:58
nmz787is that high enough DPI, sensitivity, etc?09:58
chris_99yeah plenty high enough DPI09:59
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nmz787because the TAOS chips are gonna be a lot easier to work with than a CCD like the toshiba or sonys i linked to09:59
chris_99mm10:00
chris_99i'm planning on sticking a light on top of the hydrometer now and using that to pick it up10:01
nmz787to sense the level?10:01
chris_99yup10:01
archelsthere has to be an easier way to make a level sensor10:09
chris_99any other sensors that could be used?10:09
archelswhat are your requirements?10:10
archelsthere are quite a few ways to measure fluid level, most of them simpler than using a CCD strip10:10
chris_99it's to measure specific gravity10:11
chris_99from a hydrometer10:11
chris_99not just a fluid level per se10:11
archelsso there's a float, the one-dimensional position of which has to be measured10:12
chris_99mm10:12
archelsis there any need for isolation because of the chemicals involved?10:12
chris_99nope10:12
chris_99just beer :)10:12
archelsthe easiest approach would be to attach the float to a potentiometer10:13
chris_99ThomasEgi mentioned that10:13
chris_99there isn't enough force from the hydrometer10:13
chris_99for that to work though10:13
archelswell, you have to make a lever. If the force is small, make the pot only rotate a few degrees10:15
archelsand/or get a better pot10:15
archelsotherwise, you can make a simple linear optical encoder from an old inkjet printer10:16
chris_99that wouldn't be as precise though as using an imaging sensor10:16
archelswell, with an image sensor you need to keep stuff aligned pretty well for it to stay in focus10:17
archelsand you need an appropriate light source and optics10:17
chris_99true, i don't think i need any fancy optics though, i was planning on aligning the top of the hydrometer in a tube with the LED pushed up to the sensor10:19
nmz787chris_99: this just uses 2 LEDs http://moab.eecs.wsu.edu/~pedrow/classes/ee415/Fall_2005/Refereed%20Papers/paper1_garnet.pdf10:20
nmz787ahh that's liquid level though, not a stick's level10:20
nmz787have you considered buying a magnet strip and using a hall effect sensor?10:21
ThomasEginmz787, hall effects /magnetometers was in discussion.10:23
ThomasEgipersonally. i still favor the ac-coil with the magnetic field picked up by other coils.10:23
chris_99nmz787, http://openhydrometer.com/about10:23
chris_99that's the current idea10:23
ThomasEgihm.. another idea... wolud be to use an optical encoding on the hydrometer10:24
chris_99not precise enough imo10:25
nmz787like reflective patches?10:25
nmz787and just count ticks like the magnet strip?10:25
ThomasEgichris_99, i wouldnt say that it's not precise enough10:25
ThomasEgioptical encoding can get you μm precision10:25
chris_99well you'd have to make them tiny for it to work10:25
chris_99which would need an image sensor of v. high dpi10:25
ThomasEginope. no need for a high dpi sensor :)10:26
ThomasEgiyou just have to add a mask in front of it10:26
chris_99huh?10:26
chris_99not heard of that, how's that work10:26
ThomasEgiso you have like.. 2 line patterns10:26
ThomasEgiwhich shift over each other10:26
chris_99hmm interesting10:26
ThomasEgiresulting in a triangular brightness change10:26
ThomasEgiit's a relative messurement. very precise tho. you need ocassional marks for absolute positioning.10:27
nmz787I think he means something like this, with one or two pixels instead of a camera http://en.wikipedia.org/wiki/Structured-light_3D_scanner10:27
ThomasEgibut those can easily be done with like optical endstops or so10:27
ThomasEginmz787, nope.10:27
nmz787and instead of the pattern generated by a projector, it's just printed on the hydrometer?10:27
ThomasEginmz787, different principle10:28
chris_99what's the one you're talking about called, ThomasEgi10:28
ThomasEgii'm searching for the correct name already10:28
chris_99aha cheers10:29
archelsoh man you guys are overengineering the hell out of this10:29
nmz787all you need is a flux capacitor chris_9910:29
chris_99haha10:29
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nmz7873D scanning would work too though ;)10:31
nmz787heh heh10:31
chris_99lol10:32
nmz787so you don't want to use a refractometer because it will get dirty and be hard to clean?10:32
nmz787that seems like it would be cheap, and you'd need less CCD pixels10:32
nmz787you might also be able to do it through the glass10:33
chris_99a couple of reasons, not esp. accurate for beer apparently, and also in-place ones are expensive10:33
ThomasEgii can't really find the name for it. i'd have to work through my university stuff to find it.10:33
chris_99no worries10:33
ThomasEgibut.. once more. i highly recommend to go with that coil approaches , messuring AC voltage10:33
nmz787i'd just place a red laser on the opposite side of the glass carboy, across from the CCD, then refraction should move the spot up or down the CCD10:34
nmz787i think that might work10:34
ThomasEgiit's rather robust. not depending on optics, so it works in a dirty and wet environment. relatively simple and cheap10:34
chris_99just thinking if i did that ThomasEgi i could use those tiny sealed inductors10:35
chris_99couldnt i10:35
ThomasEgi... you could if you change the geometric arrangement10:36
ThomasEgii'd pretty much have one coil inside a set of other coils.10:36
ThomasEgiarranged on one axis10:36
chris_99i was thinking you meant lots of coils on the hydrometer and then a hall effect on the float10:36
ThomasEginope.10:36
ThomasEgiyou basically wind a thin wire around the hydrometer. and turn it into a coil this way10:37
ThomasEgithen you put a tube, wind wire around it in like 8 sections (they may overlap, just make sure each has the same winding count).10:37
ThomasEgiand you put that over the dryrometer, mounted to the float.10:37
ThomasEgithen you connect a capacitor in series with the hydrometer coil, feed a rectangular signal to it (from a microcontroller) that matches the resonance frequency of the LC circuit10:39
ThomasEgithe rest is just adding a few diodes to rectify each of the float-coils outputs , buffer that with a small capacitor, maybe voltage divide down to to a save microcontroller-voltage level. and ADC your results10:39
ThomasEgiwill result in like 8 adc results, building the weighted average you can easily calculate the position of your float.10:40
chris_99very interesting, so the hydrometer becomes an electromagnet right and you're sensing it's position using these 8 coils around the cylinder?10:40
ThomasEgiexactly10:40
ThomasEgiand since it is an alternating magnetic field. you can pick the signal up with simple and cheap coils, instead of magnetometers10:41
chris_99and it'll resonate perfectly as it where if its exactly aligned to the coils, and when it moves it'll generate a different signal10:41
ThomasEgiit's dirt cheap, pretty robust, reasonably simple/difficult. and with a bit of tuning i'm pretty sure it'll be accurate enough,too10:41
ThomasEgithe receiver coils won't resonate10:42
ThomasEgithey just pick up the field change and convert it into a voltage for you.10:42
chris_99ok that makes sense10:42
chris_99so it's sort of calculating the difference from a perfect waveform right?10:43
ThomasEginope.10:43
ThomasEgithe waveform gets rectified.10:43
ThomasEgiso the result is like a signle analog value for each pickup coil10:43
chris_99oh right10:43
ThomasEgiit'll probably look a bit like a gauss-curve or so , if you draw it with the 8 points10:44
ThomasEgiall you have to do is find the peak-point of that.10:44
ThomasEgibut that's a mathematically simple operation10:44
ThomasEgieven if you have only 8 points. the weighted mean will turn out nicely10:44
ThomasEgiin worst case. you'll have to apply some linearisation-correction at the end of it. but that's easy to do,too.10:45
ThomasEgithe only thing that mihgt be a bit tricky without a scope is to get the resonance frequency set right. but, with some tricks, that's not half as difficult10:46
chris_99i do have a scope actually10:47
ThomasEgieven better then.10:47
ThomasEgibut in yuor case. you could controll the frequency by the μC. and just ramp throught the frequency range once. messuring the voltages on the pickup coils. and then use the frequency where it maxed10:48
ThomasEgias long as you protect the microcontrollers ADC pins from overvoltage, there's very little that could go wrong10:48
ThomasEgiwrong as is, ruining your day.10:49
chris_99mm sounds a very clever idea10:49
ThomasEgiyeah. the only thing that might be even easier. would be to use a triangulation sensor. given you can find one for the distance you want.10:50
ThomasEgibut then, it's optical again and i have no idea how well that'll work out if there's foam and stuff around10:50
ThomasEgii'd go with the coils10:50
chris_99this site's got some cool stuff http://www.disensors.com/products.aspx?id=2111:02
chris_99i bet they're not cheap though11:02
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hifrog~12:02
hifrogpaperbot help12:03
hifrog!paperbot12:03
hifrogno?... hmm12:03
chris_99you do paperbot: url i think12:04
hifrogpaperbot: https://www.sciencemag.org/content/339/6118/44012:04
paperbotSSLError: [Errno 1] _ssl.c:504: error:140770FC:SSL routines:SSL23_GET_SERVER_HELLO:unknown protocol (file "/usr/local/lib/python2.7/dist-packages/requests/models.py", line 632, in send)12:04
kanzurehttps is not supported12:05
hifrogpaperbot: 10.1126/science.122601812:05
hifrogoh hehe12:05
hifrogpaperbot: http://www.sciencemag.org/content/339/6118/44012:05
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/To%20Favor%20Survival%20Under%20Food%20Shortage%2C%20the%20Brain%20Disables%20Costly%20Memory.pdf12:05
kanzure.botsnack 312:05
yoleaux:D12:05
kanzure(positive reinforcement)12:05
hifrog<312:05
kanzurenmz787: the backlash in the home dialysis thread is hilarious12:05
nmz787kanzure: weird for sure12:09
nmz787http://www.frontiersin.org/Microbiotechnology,_Ecotoxicology_and_Bioremediation/10.3389/fmicb.2013.00005/full12:09
nmz787Preparing synthetic biology for the world12:09
nmz787Gerd H. G. Moe-Behrens1, Rene Davis2 and Karmella A. Haynes12:09
kanzurepaperbot: http://www.frontiersin.org/Microbiotechnology,_Ecotoxicology_and_Bioremediation/10.3389/fmicb.2013.00005/full12:09
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/Preparing%20synthetic%20biology%20for%20the%20world.pdf12:10
kanzurejrayhawk: would you be willing to write the scripts to auto-recompile paperbot when someone pushes to the translators.git repository? i didn't do it when we were talking about it last time. :(12:10
nmz787that article links to this http://www.youtube.com/watch?v=lQjF8ir4SKs12:11
nmz787.title12:11
yoleauxcompound74 - YouTube12:11
nmz787which lists jake wintermute as a story writer12:11
nmz787and thanks pam silver's lab12:11
kanzurepam silver.. why do i know this name. is she igem related?12:11
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nmz787harvard prof12:12
nmz787jake and she worked on the "Harvard scientists to make LSD factory from microbes"12:12
kanzureso basically every 15 year old's dream?12:12
nmz787i guess older people might dream about that too12:12
chris_99how similar is ergot to LSD12:13
nmz787video is OK12:13
nmz787chris_99: it's a building block of LSD12:13
nmz787well, ergot is a fungus12:13
nmz787ergotamine is what they use12:13
chris_99LSD was the first chemically synthesised drug or something wasn't it or is that my imagination12:14
nmz787someone should ripoff pokemon and call it synbio12:15
kanzurei'm on it12:15
nmz787heroin probably happened earlier12:15
kanzurehttps://github.com/kanzure/pokemon-prism12:15
nmz787depends on what you mean by synthesized12:15
nmz787they used a natural product as a builiding block12:15
nmz787just as heroin uses12:15
chris_99yeah heroin is easier i bet to make12:15
nmz787and aspirin12:15
nmz787h and asp are just acetylation if i recall correctly12:16
chris_99LSD manufacturing is quite skilled isn't it?12:16
nmz787i think so12:16
nmz787LSA is natural also12:17
nmz787LSD is just the addition of two ethyls12:17
nmz787but I think they're damn hard ethyls to get on12:17
nmz787I actually don't know12:17
chris_99i wish i knew more about chemistry but i always found it very confusing12:18
nmz787it's not much different than e-fields or magnetic field concepts12:18
nmz787opposites attract, likes repel12:18
nmz787but the system is all linked and inducts all around12:18
chris_99mm i see what you mean12:19
nmz787err, the system for a single molecule is coupled, and multiple molecules can act in each other, but really big molecules can fold on themselves and do both12:20
nmz787act on each other*12:20
nmz787so that's why DNA programming isn't just like text12:20
nmz787it's more like demoScene coding12:20
chris_99heh12:20
nmz787http://awards.scene.org/awards.php?year=201112:21
nmz787wait, download is 45 megs12:21
nmz787is this not what I want?12:21
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nmz787i think kanzure linked to some good ones a while back12:22
nmz787that were just .js12:23
chris_99mm i think i remember those12:23
chris_99hmm theres some weird stuff in there 9.1M Apr 21  2011 Lightwave.dll12:25
chris_99alas doesn't work in wine12:25
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nmz787kanzure: is there a way to track down this chinese dialysis machine guy?12:26
nmz787i searched his name, but it might be better to use chinese characters12:28
nmz787i guess we might have to get his original video translated, if we could find it12:28
juri_I have someone who can help with chinese translation.12:29
juri_(depending which chinese, of course)12:29
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nmz787is there a way to add a linkback between two pages?12:36
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kanzurenmz787: yes it's called a hyperlink12:42
kanzurenmz787: the javascript demoscene stuff you're thinking of might be http://possan.se/junk/webglass/index.html12:43
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nmz787kanzure: do you remember the name/email of the asian guy on diybio who has dr. in his name and i think is from canada, he might be a lawyer or comments a lot on law topics12:51
nmz787i thought it was dr lau12:51
kanzurenmz787: Lawrence Lau <drlawrencelau@gmail.com>12:56
kanzure"After an extended discussion with Thomson, they assured me that common acronyms like JCAP and JHEP are indeed properly mapped to the journal title/abbreviation."12:59
kanzure" I reexamined my data and reached a new and frightening conclusion: it is getting increasingly difficult for Thomson (and I assume all citation database producers) to properly parse, identify, and link cited references for electronic journals that, more and more, are abandoning issue dates, volumes, issue numbers, and pagination."12:59
kanzure"In some cases, such information can be found at the journal site, but with considerable effort. As a result, I believe authors are compiling reference lists using various elements in all sorts of formats (leading zeros, article numbers reported as pagination, etc., a real mess)."12:59
kanzure"This new conclusion was confirmed in email correspondence with Thomson.  To their credit, they are continuing to work on their parsing, capture, and linking algorithms."12:59
kanzuredatabase drift to OCR and people using OCR results :)13:01
kanzurenmz787: i'll grab the bionet archives. i suppose i should also grab the mems-talk archives while i'm at it.13:06
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kanzurenmz787: their server is pretty slow. this seems like these were originally usenet archives?13:08
kanzure"Only about 10-20% of the 2.5 million articles published annually in the world's 24,000 peer-reviewed are being self-archived today" (bionet/jrnlnote, 2004)13:15
kanzure(he meant "in the world's 24,000 peer-reviewed journals")13:15
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kanzureheh a 1991 email about transcranial magnetic stimulation http://www.bio.net/bionet/mm/neur-sci/1991-August/011005.html14:09
kanzure"head and neck.  In the experiment I was in the experimenters were14:10
kanzuretrying to stimulate the visual cortex to produce phosphenes. They were14:10
kanzurevery faint, but definitely there"14:10
nmz787neat!14:12
nmz787I'm not sure if they were usenet or always on that bio.indiana.edu server14:13
nmz787paperbot: http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2006.05584.x/abstract14:16
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/3e5b73c72c0546bf1e970cf61a1b77c2.txt14:16
nmz787paperbot: http://onlinelibrary.wiley.com/store/10.1111/j.1365-2958.2006.05584.x/asset/j.1365-2958.2006.05584.x.pdf14:16
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/8d4a00fbad516ff2077a398470ffa3e3.txt14:17
nmz787kanzure: that first link should work14:17
nmz787access-permission-wise14:18
kanzure">Or are they simply organisms used for airplanes14:22
kanzure>testing? If so, what for exactly?"14:22
kanzure"The molds listed by ATCC are used in standard methods for testing various14:22
kanzurematerials for resistance to deterioration by fungi.  For details see, for14:22
kanzureexample, the military standard MIL-STD-810D  Method 508.3.  This was issued14:22
kanzureJuly 19, 1983, there may be more recent versions.  This standard describes14:22
kanzurethe testing methods and some of the reasoning behind them."14:22
kanzurehehe "$4 to $8 per base is not uncommon" in 1992 http://www.bio.net/bionet/mm/methods/1992-April/000843.html14:36
kanzureheh "science is not magic" "For the 'kit scientists', science *is* magic." http://www.bio.net/bionet/mm/methods/1992-July/000282.html14:39
kanzurehttp://www.bio.net/bionet/mm/methods/1992-July/000279.html14:40
kanzure"In my estimation the problem with the "kit" mentality is that it leads to stagnancy in the development of methods. If you don't understand the basis of what you are doing, how can you troubleshoot, and how can you improve the method. As a previous poster has said, it makes science appear to be agic."14:40
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kanzure*magic14:48
kanzureel cheapo power supply ($10) for pulse field electrophoresis http://www.bio.net/bionet/mm/methods/1997-September/060887.html14:51
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kanzurehttp://en.wikipedia.org/wiki/Patrick_Arnold15:26
kanzure"Patrick Arnold is an American organic chemist known for introducing androstenedione, 1-Androstenediol, and methylhexanamine into the dietary supplement market, and for creating the designer steroid tetrahydrogestrinone, also known as THG and "the clear".[1]"15:26
kanzure"THG, along with two other anabolic steroids that Patrick Arnold manufactured (norbolethone and desoxymethyltestosterone (DMT), were drugs at the heart of the BALCO professional sports doping scandal.[2] At the time of their creation, they were not on any banned substance list. BALCO distributed these worldwide to world class athletes from a wide variety of sports ranging from track and field to professional baseball and football."15:26
kanzure"Arnold who is also an amateur bodybuilder, initially gained notoriety as "the Father of Prohormones."[4]"15:27
kanzure"Arnold was sentenced to three months in prison at Federal Correctional Institution, Morgantown in West Virginia for his role in the BALCO incident.[1]"15:27
kanzurehttp://patrickarnoldblog.com/homemade-steroids-making-users-sick/15:28
kanzureok i like this guy15:28
kanzure"Patrick currently produces products for the nutritional supplement company E-pharm Nutrition, as well as for Prototype Nutrition.  He continues to be perhaps the number one driving force in the advancement of performance enhancing nutritional supplementation"15:29
kanzure"Little did people realize though that part of the credit for McGuire’s amazing year was owed to chemist Patrick Arnold and his incredible new product androstenedione (a.k.a.Andro) which McGuire used to help him smash 70 homers that season."15:30
nmz787nice15:32
nmz787kanzure: are you going to post that cheapo power supply? i think john griessen would be interested15:33
kanzurenmz787: no, i decided that i did not want to post it because there were no details available.15:34
kanzureyou're welcome to, but since there are no details i don't entirely see the point.15:34
nmz787it only uses one part15:36
nmz787which is listed15:36
kanzuremaybe i didn't read closely enough. it sounded like there was some circuit involved with multiple parts that were non-disclosed. but i could be wrong.15:37
nmz787nah it15:37
nmz787it's just a 'bridge diode' using AC mains voltage15:38
nmz787actually I guess I won't post it15:38
nmz787I believe we've talked about using a dimmer switch before15:38
nmz787which I think is the same thing15:38
kanzurego ahead and post it anyway, it's useful.15:38
kanzurei checked my email archives to see if anyone has mentioned patrick arnold to me before, and all i got was this (which i just sent to diybio):15:39
kanzurehttps://groups.google.com/forum/?fromgroups=#!topic/diybio/_nfom6eIrJA15:39
nmz787kanzure: invite him here :P15:40
kanzure"A week after Arnold took his first dose of liquid mestanolone, his life began to change. At the gym, he was on fire. ...  Arnold focused his efforts on a patent he came across while flipping through chemical abstracts. It came from an East German pharmaceutical company called Jenapharm, which produced most of the steroidal compounds used in the former communist nation’s athletic doping program."15:45
kanzureinteresting that the german government contracted out all of their steroid procurement to a company.15:45
nmz787guess they're all about efficiency!15:46
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nmz787"In attempting to synthesize crystal meth, these do-it-yourselfers have caused a rash of trailer park explosions and often unwittingly produce a drug coated with toxins like hydroiodic acid. The best way to remove those noxious byproducts is by washing the drug in alcohol using a Bchner funnel, a specialized lab vacuum. But most kitchen chemists have never even heard of it. When this final purification step is skipped, the toxins eat away at the user15:47
nmz787I didn't know 'meth mouth' wasn't caused by methamphetamine smoke itself...15:47
kanzure"Just as Arnold suspected, norbolethone was so obscure that professional doping programs had no reference sample and thus could not detect it."15:48
kanzure"It was a brash entrepreneur named Victor Conte who pushed the limits of that obscurity. He ran a sports-nutrition center in Burlingame, California, called the Bay Area Laboratory Co-operative (BALCO). Through BALCO, Conte sold legal  zinc-magnesium supplements of questionable efficacy and enlisted topflight athletes to promote them. Among them were true superstars: Marion Jones, ... Barry Bonds, ..."15:49
kanzurehttp://en.wikipedia.org/wiki/Bay_Area_Laboratory_Co-operative15:52
kanzurehuh. they only served <2 years in prison for selling steroids.15:53
kanzureheh he communicated by usenet:15:56
kanzurehttps://groups.google.com/groups/profile?enc_user=mXlCmxIAAADUU-vZ8NL2cxDLZ4x5KpW48rhlH0Pnl47z4AZhN98BFg&hl=en15:56
kanzurepatrick arnold: https://groups.google.com/groups/profile?hl=en&enc_user=cvMkqhYAAAALb6sk9UTqGUNKf42inB2nlgUpxsgrFUYz4iGseXwOPQ15:57
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nmz787nothing recent huh16:08
kanzurei heard about him from reading the comments here http://news.ycombinator.com/item?id=513625416:11
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kanzure"(especially with the ability to export SWF to JS with easel.js)" well that sounds terrifying16:44
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kanzuredwayne_: hello17:17
dwayne_hello17:17
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Guest62567http://www.jstor.org/stable/4018857917:24
Guest62567test sorry17:24
Guest62567paperbot: http://www.jstor.org/stable/4018857917:24
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/5671a1dc192d203b65c396e15c0b85aa.txt17:24
Guest62567paperbot: http://www.jstor.org/stable/pdfplus/40188579.pdf17:25
paperbotno translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/43b57384bf3d7b254dd444730db79f6b.txt17:25
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nmz787kanzure: do you know a place i could ask to identify an IC?19:53
kanzuredo you already have it decapped?19:54
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nmz787it has a part number on it19:55
nmz787but it's not googling19:55
nmz787and i don't know the symbol on it19:56
kanzureah you mean.. visual inspection.19:56
kanzurewell, first i would try ##electronics19:56
kanzurethen i would try piclist19:56
ThomasEginmz787, got a picture and whatever's printed on top of it?19:58
ThomasEgiand where did you find the part (in what device, if any) ?19:58
ThomasEgimy connection might timeout soon.19:59
kanzurealso it's possible that octopart or digikey will know the part number even if google does not.19:59
ThomasEgialldatasheet.com would be another place to search20:00
kanzureisn't that a spam site20:00
ThomasEgihaha. nope.20:00
ThomasEgiit's pretty good recource for finding datasheets20:00
ThomasEgimillions of datasheets there20:01
ThomasEgiexcellent recource. also has many older parts that are no longer listed on any online store sites. and from companies that are already out of business20:01
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nmz787i think it's just a temp overload fuse20:15
nmz787thermal protection, and i figured out that it must be working20:15
nmz787since it's on the main AC incoming20:15
nmz787thanks though20:15
nmz787it's in this Hybaid hot air thermal cycler20:15
nmz787i think the relay for the fan is busted20:16
nmz787it has a 0.1 uF + 100 ohm, 10% 10% 630V20:16
nmz787is that big enough to melt a screwdriver if i arc it?20:16
nmz787what is the protocol for discharging caps?20:17
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nmz787hello20:21
ThomasEgiit wont melt the screwdriver20:22
ThomasEgibut you can expeect a bunch of sparks to fly away20:22
nmz787sorry i didn't mean to sound impatient20:22
nmz787##electronics says i need to login20:22
kanzurethat means your irc nickname isn't registered with NickServ20:22
kanzure/query nickserv help20:22
nmz787and i wans't sure if irssi wasnt responding20:22
kanzure/query nickserv register20:22
ThomasEgipropper protocol is to disconnect them from the power source. and discharge over a resistor ( of adequate value, not to small or it'll burst, not too high or you'll wait ways to long)20:23
ThomasEgithe big capacitors (0.1uF isn't really big) are stored with the terminals shorted , so they don't accidently charge up from some random source.20:24
nmz787col20:25
nmz787cool20:25
nmz787logged in now20:25
nmz787yeah20:25
nmz787my prof a while ago had a 'death cap'20:25
nmz787it was the size of three or four of those lantern batteries20:25
ThomasEgiyeah. those are fun.20:25
ThomasEgibut .. there are even bigger ones20:25
ThomasEgilike used to buffer the starter motors of big engines.20:26
ThomasEgithey can go like 10kA short current eachh20:26
nmz787crydom solid state relay20:27
nmz787wow20:27
ThomasEgithat cap you have there. a 2Mohm resistor should discharge it safely.20:27
ThomasEgimight take a while. but you can check with a voltmeter.20:27
ThomasEgigiven a regular 0.25W resistor20:28
ThomasEgiand there goes my connection.. i guess20:32
ThomasEgiand.. i'm back .. i guess20:32
nmz787well shorting the ss relay with tweezers turns the fan on20:34
ThomasEgishorting.. relay.. tweezers..20:35
ThomasEgithat doesn't make a very trustworthy mental picture20:35
nmz787yeah then i flipped it on remotely from a power strip20:36
ThomasEgias long as you stay away from life wires20:36
nmz787yeah20:37
ThomasEgiotherwise it sounds like.. http://f.kulfoto.com/pic/0001/0015/L80Cl14168.jpg20:37
nmz787i don't think i have any romex20:37
nmz787aww20:37
nmz787that's really cute20:37
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yash-phonecity council meetings are unexpectedly boring20:41
kanzurewhat were you expecting, pitchforks?20:50
yash-phonekinda20:51
yash-phoneit's all angry old people with no points20:51
yash-phonefor the last 3 hours20:51
yash-phonejojack's quite confident we'll get the space though20:52
kanzureask him about peter arnold20:52
kanzurelog has deets.. http://gnusha.org/logs/2013-01-29.log20:53
kanzureoops.. patrick arnold20:53
yash-phoneya he mentioned it to me briefly over pizza, dude males/ingests designer roids or what?20:54
yash-phonemakes*20:54
kanzureseems he is a chemist bodybuilder20:55
kanzurefuck now i want pizza. that is a good idea.20:55
yash-phoneit was good pizza20:55
kanzurealso if you need to keep yourself amused, there was that weird backlast against home dialysis in a diybio thread20:57
yash-phonewill give it a browse20:59
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nmz787well looks like i have a working air thermo cycler21:02
nmz787it looks like it just uses halogen light bulbs like you get anywhere for cheap21:02
nmz787the bulb it came with is good though21:03
nmz787saw a tag that said 199021:03
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yash-phoneit passed21:29
kanzurethis will forever be known as the san diego superdisaster of 201321:30
yash-phonemwuahaha21:32
kanzure[x] pipette tips, check21:32
kanzure[x] lc columns, check21:32
kanzure[x] free weights21:32
kanzurewere there people opposed to it?21:38
yash-phonenope21:42
yash-phonegonna go grab beers21:42
-!- xx is now known as tofuboss22:04
kanzure"Easiest way to reach him is to make a burner account on ProhormoneForum.com - he's got his own section there where he posts a few times a day."22:08
kanzurewtf http://www.prohormoneforum.com/content/22:09
kanzurehttp://www.prohormoneforum.com/q-patrick-arnold/22:09
-!- tofuboss is now known as xx22:11
kanzure"It appears that you've exceeded the maximum number of posts you can view, but wait, there's a simple solution. To unlock the forum and continue viewing messages,"22:18
kanzureyep this place is evil22:18
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kanzure"the dead grandmother problem" http://pike.psu.edu/dongwon/pro/grannies.pdf23:40
archelsno standard error bars? tsk23:43
kanzure+- 1 granny23:43
* Juul is in vancouver for no good reason23:44
Juulis there anything good in vancouver?23:44
Juulthey could also have all exams be unannounced23:46
Juulso many possible solutions are missing23:46
kanzurethe twist could be that the professor murdered your granny, and he knows it23:46
Juulthere is a serious lack of creative thinking in this article23:46
kanzureJuul: there's vancouver hackerspace and upverter23:46
kanzureJuul: also http://diyhpl.us/wiki/diybio/groups#vancouver23:47
Juulthe vancouver hackerspace is nice. i went there straight from the airport, but i didn't know about upverter23:47
kanzureupverter is like circuitlab sorta23:48
kanzurealso go find michael yamashita23:49
kanzurethere's a nice aquarium in vancouver, i hear23:50
Juulgood idea23:50
Juulyeah! i do love aquariums23:50
Juulas long as they don't feel like fish prisons23:50
kanzureit is giant23:50
kanzurei was supposed to go last time i went but i rebuilt an alternator instead23:51
Juulhah23:51
kanzurehow long are you in vancouver?23:51
kanzurego whistler maybe23:51
Juul4 days only23:52
Juulcool23:53
Juulthanks for the tips23:53
kanzurealso you could go south to thegeekgroup over the border23:53
Juulah, i'm having some visa stuff23:53
kanzurehacking the system?23:54
Juulso i'm trying to re-enter in a nice way23:54
Juul"look: i'm flying in from canada. that means i'm not a jobless bum!"23:54
kanzurevancouver airport has US customs on site23:54
Juulso they check your passport before you take off?23:55
kanzureyes23:55
Juulwell, let's hope they like my plan of being a tourist in the u.s. for the next couple of months23:55
kanzurei like it.23:58
--- Log closed Wed Jan 30 00:00:45 2013

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