| --- Log opened Sun Jul 07 00:00:18 2013 | ||
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| @fenn | Burninate: color electron micrograph images are sometimes hand colored, sometimes false color based on x-ray emission spectra (which is fairly easy to get from an electron microscope) | 06:48 |
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| @kanzure | https://github.com/Vitallium/phantomjs-qt5 | 08:50 |
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| @kanzure | yashgaroth: sup | 09:03 |
| yashgaroth | waking myself up before lab meeting | 09:04 |
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| jonathan_ | paperbot http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=283858 | 09:16 |
| jonathan_ | poor paperbot :-( | 09:17 |
| @kanzure | someone really needs to fix it | 09:28 |
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| @kanzure | jonathan_: there he is | 10:06 |
| brownies | .meow | 10:07 |
| yoleaux | http://moar.edgecats.net/cats/anigif_enhanced-buzz-27223-1364482168-6.gif | 10:07 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/ea7a9c6d72dad1fb688b646864627fdc.txt | 10:07 |
| yashgaroth | paperbot http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=283858 | 10:07 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/899a13056137959f9a2264f72f617c86.txt | 10:07 |
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| @kanzure | see, he shouldn't be grabbing "edgecats".. | 10:08 |
| yashgaroth | didn't he previously check for his name before pulling the url? | 10:09 |
| @kanzure | well, sort of.. anything explicitly given to him was always pulled | 10:09 |
| brownies | oh, haha... i didn't realize he was grabbing every link. that seems a bit much. | 10:09 |
| brownies | for example, what if i just want to run .title on a youtube vid? | 10:10 |
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| @kanzure | and then, if he found a pdf on a page, he would say something about it, but otherwise he wouldn't say anything | 10:10 |
| @kanzure | brownies: yeah, this is a recent regression | 10:10 |
| brownies | i'm of the belief that robots should only speak when spoken to | 10:11 |
| @kanzure | sure | 10:11 |
| @kanzure | but at the same time, if you drop a link to nature, getting a pdf link without asking for it is pretty nice of paperbot | 10:11 |
| @kanzure | why the hell else would someone link to nature? etc. | 10:12 |
| jonathan_ | paperbot http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=283858&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D283858 | 10:28 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/6c7cc49964f6e79205cbef94d7420c51.txt | 10:28 |
| jonathan_ | UMMMM | 10:28 |
| jonathan_ | actually i have access to this one anyway :-D | 10:29 |
| jonathan_ | geez the guy wrote the software in Forth omg | 10:30 |
| jonathan_ | pointless | 10:31 |
| gradstudentbot | The protocol is wrong. | 10:31 |
| jonathan_ | i know, totally wrong | 10:31 |
| brownies | gradstudentbot jumps in just in time again | 10:36 |
| gradstudentbot | Yeah, but that was only a sample size of one. | 10:36 |
| brownies | add a random delay, and i bet gradstudentbot could pass the turing test. | 10:37 |
| gradstudentbot | The gel is streaking. | 10:37 |
| brownies | ah well. | 10:37 |
| @kanzure | btw i think gradstudentbot is a good exception to the speak only when spoken to rule | 10:42 |
| gradstudentbot | When is he back from sabbatical? | 10:42 |
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| jonathan_ | lemme get this straight, the sun has just burned off the fog, there's bikinis everywhere, the water's warm, and i'm supposed to go to the lab?? | 11:51 |
| delinquentme | jonathan_, they'll come to the lab as soon as you fix aging | 11:52 |
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| jonathan_ | likely only OLD people will go at that point eh | 11:54 |
| jonathan_ | :-( | 11:54 |
| jonathan_ | the stem cell into liver paper looks promising | 11:55 |
| jonathan_ | for mice anyway lol... mice will never suffer from organ donor shortage again! | 11:56 |
| jonathan_ | btw gradstudentbot should be renamed to gradstudenthottiebot | 12:03 |
| gradstudentbot | You don't happen to have any more virgin flies, do you? | 12:03 |
| jonathan_ | as I was saying.. see she's always got sexual topics on the mind | 12:03 |
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| delinquentme | nmz787_, | 12:10 |
| delinquentme | what was the name of that additive atomic scale feature paper | 12:10 |
| delinquentme | yashgaroth, you helped w j5? haha i hit those guys up about working w them | 12:14 |
| delinquentme | IMO spent too much time on the interface | 12:14 |
| delinquentme | but thats a culture problem. | 12:14 |
| yashgaroth | wat | 12:14 |
| delinquentme | j5 from JBEI | 12:14 |
| delinquentme | what it does is awesome | 12:14 |
| delinquentme | it is closed source ... but they spent a TON of time on the interface | 12:15 |
| delinquentme | it needs to be a codebase | 12:15 |
| delinquentme | a library | 12:15 |
| yashgaroth | I think you're thinking of someone who isn't me | 12:15 |
| jonathan_ | it needs to be 100% html5 | 12:15 |
| jonathan_ | so much bioinformatics could benefit from html5 imho | 12:15 |
| delinquentme | was just reading the logs ... thought you said something about " check the logs for my name " ... in regard to nmz about j5 | 12:16 |
| yashgaroth | no that was about his caffeine-spewing fingernails | 12:17 |
| ParahSail1n | bioinformatics and html5? | 12:18 |
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| @kanzure | i don't see why anything about bioinformatics requires html5 specifically | 12:22 |
| @kanzure | what are you going to do, compress a genome to fit in localstorage? please. | 12:23 |
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| @kanzure | speedwagon: hi | 12:35 |
| Burninate | what's the oldest population of cloned mammals? | 12:37 |
| Burninate | I read something the other day indicating something like one in 25 genes in cloned animals was faulty as of ten years ago | 12:38 |
| archels | >25 | 12:39 |
| archels | cf. http://www.cell.com/cell-stem-cell/abstract/S1934-5909(13)00008-8 | 12:39 |
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| Burninate | good to know they've dealt with that | 12:40 |
| gradstudentbot | Should this be on ice? | 12:42 |
| Burninate | No you fool! Liquid helium! It's the only way to be sure. | 12:48 |
| juri_ | kanzure: i actually found something handy in html5 the other day. it was suprising. | 12:50 |
| ParahSail1n | kanzure, what was my messup in the paperbot business | 12:51 |
| @kanzure | ParahSail1n: no idea yet | 12:51 |
| @kanzure | ParahSail1n: paperbot is pasting links for totally irrelevant junk | 12:52 |
| @kanzure | ParahSail1n: it's downloading and saving youtube links, links to images, news articles, etc. and then pasting a link to those saved files. both of these shouldn't happen. | 12:52 |
| @kanzure | ParahSail1n: but i'm not sure why this regression is happening | 12:52 |
| ParahSail1n | so its responding to links not directed to it also | 12:53 |
| @kanzure | it always did that, actually | 12:53 |
| @kanzure | when it's not explicitly asked to look at a url, it only pastes a pdf link if there was a pdf downloaded successfully | 12:53 |
| @kanzure | but now it's saving everything even when it's not asked | 12:54 |
| gradstudentbot | Actually, I didn't do that part, it was already here when I joined the lab. | 12:55 |
| @kanzure | this is because sometimes people paste a link to nature without asking paperbot to grab it, and i wanted paperbot to still do its thing | 12:55 |
| @kanzure | but in the event of failure, it shouldn't tell us, because the vast majority of cases are failures | 12:55 |
| @kanzure | it should only tell us about failure when we explicitly tell it to do soemthing | 12:56 |
| @kanzure | *something | 12:56 |
| ParahSail1n | well i see the problem, i didnt pay attention to what "explicit" variable meant | 12:56 |
| @kanzure | oh you saw this maybe? | 12:57 |
| @kanzure | paperbot: http://www.cell.com/cell-stem-cell/abstract/S1934-5909(13)00008-8 | 12:59 |
| paperbot | ConnectionError: HTTPConnectionPool(host='www.sciencedirect.com', port=80): Max retries exceeded with url: /science/article/pii/S1934590913000088?_fmt=high&_origin=browse&md5=70f2d5cc2ca22ccd4565b0d397e7581c (file "/usr/local/lib/python2.7/dist-packages/requests/models.py", line 628, in send) | 12:59 |
| @kanzure | paperbot: http://www.cell.com/cell-stem-cell/abstract/S1934-5909(13)00008-8 | 12:59 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/Successful%20Serial%20Recloning%20in%20the%20Mouse%20over%20Multiple%20Generations.pdf | 12:59 |
| @kanzure | oh dear. | 13:00 |
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| ParahSail1n | hm, if navigating for pdf takes you off domain, i could see some problem | 13:03 |
| @kanzure | did you remove the 'explicit' checking code? | 13:04 |
| ParahSail1n | yeah | 13:04 |
| ParahSail1n | pull request restoring it | 13:04 |
| @kanzure | okay at least we know | 13:04 |
| @kanzure | ah cool, i was going to go restore it myself in a bit | 13:04 |
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| ParahSail1n | paperbot, http://download.cell.com/cell-stem-cell/pdf/PIIS1934590913000088.pdf | 13:07 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/5c292952c781674a5fd387d4412eb640.txt | 13:07 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=daffd43c rcallahan: Update scihub.py | 13:08 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=4f59832e rcallahan: Update scihub.py | 13:08 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=676d6c43 rcallahan: Update scihub.py | 13:08 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=d1fbab5d rcallahan: Update scihub.py | 13:08 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=c601cb88 U-ACORNSYS\pwang: Cookie decorator and explict command check restored | 13:08 |
| gnusha | https://secure.diyhpl.us/cgit/paperbot/commit/?id=e9f3d20d Bryan Bishop: Merge remote-tracking branch 'rcallahan/master' | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/760b2c0f0058b8ffe27c8e80a9539635.txt | 13:08 |
| gnusha | paperbot: reload papers | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/291ab05fc61b1d1dc512f6438b20d8bd.txt | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/a8970eb43736a26b720fc798690925d9.txt | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/fe23b0d0f665e754800254aa84ba16e4.txt | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/3ef38066405d1c72ff6cd8f06b2de351.txt | 13:08 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/d82a313f7160131094aeb0c5523a25b2.txt | 13:08 |
| paperbot | gnusha: <module 'papers' from '/srv/ikiwiki/paperbot/modules/papers.py'> (version: 2013-07-07 20:08:38) | 13:08 |
| @kanzure | god damn it | 13:08 |
| @kanzure | i should have anticipated that | 13:09 |
| @kanzure | https://secure.diyhpl.us/cgit/paperbot/commit/?id=e9f3d20d | 13:09 |
| @kanzure | :crickets: okay i guess it worked | 13:09 |
| @kanzure | paperbot: https://secure.diyhpl.us/cgit/paperbot/commit/?id=e9f3d20d | 13:09 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/83363ace6f598ab159ceb582a1bb113f.txt | 13:09 |
| gradstudentbot | My parents keep asking when I'm going to finish. | 13:09 |
| @kanzure | ParahSail1n: thank you | 13:09 |
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| ParahSail1n | paperbot: http://www.cell.com/cell-stem-cell/abstract/S1934-5909(13)00008-8 | 13:21 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/Successful%20Serial%20Recloning%20in%20the%20Mouse%20over%20Multiple%20Generations.pdf | 13:21 |
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| @kanzure | VoidAtValhalla: hi | 16:28 |
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| @kanzure | paperbot: http://www.massivedynamic.com/pdf/gene_therapy_03.pdf | 17:20 |
| paperbot | http://diyhpl.us/~bryan/papers2/paperbot/c97f79cd31d2c5d35e094413133b4b55.pdf | 17:20 |
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| @kanzure | .title http://www3.alcatel-lucent.com/bstj/ | 18:54 |
| yoleaux | Bell System Technical Journal, 1922-1983 | 18:54 |
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| --- Log closed Mon Jul 08 00:00:19 2013 | ||
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