2013-07-24.log

--- Log opened Wed Jul 24 00:00:34 2013
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archelshttp://www.itinstock.com/ekmps/shops/itinstock/images/apc-symmetra-rm-8kva-8000va-220-240v-extended-run-xr-rackmount-ups-ar3300-rack-[5]-5599-p.jpg05:10
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kanzureParahSailin: don't route it to your actual email. route it to a throwaway email account.05:48
ParaSa1linok, 3 resumes before 8 oclock05:51
ParaSa1linwho sends word docs as resumes...05:53
kanzureunemployed people05:53
kanzurethis is why they're unemployed05:53
ParaSa1linyeah thats what i mentally said to myself05:55
kanzure"I fiddled around with the Ayam surface modeler and it's (old school) openNURBS export, and after climbing a bit of a GUI learning curve and hacking our 3dm-g converter in various ugly ways I managed to get the following two surfaces into a .g file:"05:57
kanzurehttp://bzflag.bz/~starseeker/extreme_ssi_test.g05:57
kanzure"I'm not entirely sure they constitute a "fair" set of test surfaces - they may be too extreme to be regarded as reasonable - but they're the closest thing I have so far to a general test case for multiple-sub-surface-patch intersections between general NURBS surfaces.  A raytrace indicates the complex surface structure is there, but unfortunately the shaded display code is showing flat planes for both surfaces, not just the one that's ...05:57
kanzure... supposed to be flat...  "05:57
kanzure"Wu, I'm not quite sure what the "correct" command to test these two surfaces for intersections would be (the only attempt I've made thus far crashed) but if these turn out to be useful test cases feel free to add them to the test NURBS geometry in the source tree. (dbconcat will be useful for that)"05:57
kanzureah the military, fixing 3d geometry so that i don't have to05:58
kanzurehehe http://www.securityweek.com/first-malicious-apps-targeting-android-master-key-vulnerability-found-wild06:01
ParaSa1linkanzure, have you ever gotten a patch to python std lib modules accepted?06:17
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ParaSa1linit really would not be very hard to make subprocess.Popen accept a dict of file descriptors06:20
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ParaSa1linhell, ruby allows it http://www.ruby-doc.org/core-2.0/Process.html06:23
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kanzurevirulently.org is available06:31
kanzureand virulentlessly.org06:31
kanzureParahSailin: haha no, i reported a bug or something, but it looked like a patch was proposed in 2004, nobody cared06:31
kanzureParahSailin: but that was for an old version of python06:31
kanzureParahSailin: i think they might accept something upstream on python 3.4 or 3.5 or whatever they are on. you should send an email asking if your proposed change would be accepted.06:31
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ParaSa1linfeel free to corroborate how ossum accepting a patch on this would be http://bugs.python.org/issue1854407:01
kanzuretrot it around in #python07:03
kanzureParahSailin: i've decided to use javascript for whatever rewrite of paperbot and zotero and stuff07:06
kanzureParahSailin: see http://diyhpl.us/~bryan/stackvm.partial.log around 16:5507:08
kanzureif you feel like reading some stuff.07:08
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ParaSa1linForbidden07:17
ParaSa1linpaperbot using node and phantomjs?07:18
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kanzureParahSailin: try again. sorry about that.07:22
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kanzureParahSailin: not necessarily node and not necessarily phantomjs. i figured that it would be nice if i picked a way to make it so that i can reuse the javascript in browsers, on servers, in zotero, or whatever. that way we don't have to fuck with python<->js bullshit.07:22
ParaSa1lini wouldnt bother with making it js aware unless i knew of a publisher07:32
ParaSa1linthat required it07:32
kanzurethat's a bad strategy. we know it happens and we know it will happen more often in the future.07:32
ParaSa1linis there an existing case where it is needed?07:34
kanzuresciencedirect07:34
ParaSa1linwe're able to scrape them with just html parsing07:35
kanzureare you sure? i remember zotero is using some iframe opening junk for them.07:35
kanzurehrm.07:35
kanzurewell, anyway, that's fine07:35
kanzurei think that each of these modules should depend on some api library, and that api library can provide the function for going through an actual browser. each module will mark whether or not it definitely needs a browser for a certain http request or something.07:36
ParaSa1linsciencedirect is handled by my python part, and while i dont know how many levels of fetching it has to do, i doubt schihub girl has any advanced javascript interpreter system07:39
kanzurelet's not copy what that person is doing07:39
kanzurei mean, it's not even worth copying07:39
kanzureso that point is nil07:39
kanzuredon't worry about webpage context running stuff07:40
kanzurethe goal is that i will handle that for everyone else07:40
kanzureand it will just magically work07:40
ParaSa1linsciencedirect pages are successfully navigated by my python that's only aware of html07:45
kanzurei don't know what you are trying to argue now07:45
kanzureare you trying to imply that i will never need javascript execution, ever, for any reason07:46
ParaSa1lini wouldnt spend time on it until it became an issue07:46
kanzureit's been an issue in the past i just don't remember why.07:46
gradstudentbotI'm working on a paper, I need to be left alone.07:47
kanzurei don't think any of this requires that working right now. that's the beauty of good design.07:47
ParaSa1linhaving to interface multiple runtime environments doesn't seem like a beautiful design to me07:48
kanzurewell, i'm certainly not going to make this phantomjs-only. that would blow.07:48
kanzureand it can't be node-only because then it would only maybe work in browsers via browserify.07:49
gradstudentbotWell, I can't really talk about it because I'm trying to get it published in Science or Nature.07:49
ParaSa1linthe only reason to actually need a javascript interpreter is if every fetch requires new javascript code to be eval'd07:50
kanzurewell.. here's the thing. i can sit around and reverse engineer their javascript if i have to, and just make requests that look like it.07:50
kanzureor i can just use an actual browser and not have to waste hours of my life.07:50
ParaSa1linif there is some js running on a publisher's site, the same stuff it is executing can be executed in another language07:50
kanzureokay, fine. answer accepted.07:51
kanzureit just means i have to do more work. and other people will help less.07:51
kanzurebut fuck other people07:51
kanzurewhat have they ever done for me07:51
ParaSa1linwhat javascript environment other than phantomjs would you be considering?07:52
kanzurea browser.07:52
kanzurezotero runs in firefox.07:52
kanzureinstead of all of this zotero js mess, it would just be commonjs-compliant js that gets loaded into their system.07:52
kanzureor it could also be injected into a page by an intermediate proxy07:53
kanzure(the reason that is good is because it means maybe the zotero people would maintain all of our crap for us. hooray.)07:54
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ParahSailinheadless gecko of some sort?08:15
kanzurehaha. no thanks.. xulrunner is the only way to run gecko apparently.08:17
kanzuremozilla's entire tech stack is completely wacky08:17
kanzurebtw i think laurentj from http://slimerjs.org/ will be attempting to patch xulruner to be headless in the next few months.. not sure if it's gonna work though.08:18
ParahSailinphantomjs?08:18
kanzurephantomjs is definitely headless08:18
kanzurethe downside is that it's using an old version of webkit in an old version of qtwebkit that was packaged into an old version of qt (qt 4.8)08:18
kanzurewebkitgtk+ is a good option because you can use it from gjs, seedjs, or python, but the downside is that it requires xserver-xorg-video-dummy or xvfb because gtk/gnome is not headless. i don't know of a way to compile gnome to be headless. it might be possible..08:19
ParahSailinworking in two different runtime environments simply so that you can eval arbitrary, possibly hostile js from a publisher08:19
kanzure(webkitgtk+ is also a good option because you can compile it from webkit.git.. it worked for me.)08:19
kanzureit's okay, i already agreed with you about not loading a page08:20
kanzurei thought.08:20
ParahSailinoh, i misunderstood what you said at 9:5208:24
heathanyone here located in chicago?08:46
* heath is wondering why the diybio group there never took off08:46
kanzurebecause he died08:47
heathoh08:47
kanzurei think that's a pretty good reason08:47
kanzureit's these people https://groups.google.com/forum/#!forum/chiopensci08:47
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heathhttp://www.commercialbargains.com/p-325-commercial-food-pizza-warmer-heated-aluminum-countertop-16x16x24-hot-box-cabinet.aspx?CAWELAID=1895011805&catargetid=1889075210&cadevice=c&cagpspn=pla&gclid=CPCYyrDEyLgCFVFp7AodXSAAIw09:20
heath.title09:20
yoleauxCommercial Food Pizza Warmer Heated Aluminum Countertop 16x16x24 Hot Box Cabinet09:20
heathi want that as my incubator09:20
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kanzurehttps://developers.google.com/cast/devprev12:11
kanzurethis seems to be a google dongle that intercepts hdmi and writes graphical widgets on top of it :(12:11
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kanzureopenworm muscle cells https://groups.google.com/d/msgid/openworm-discuss/CAHxRZu6VXOWuahgdo7vmq0tKDV4a9xPxyGF4ZBVJEUbmFxDHVw%40mail.gmail.com12:26
kanzurehttp://opensourcebrain.org/projects/muscle_model/wiki12:26
kanzure.title https://www.youtube.com/watch?feature=player_detailpage&v=DDNR1IoZKCs&t=14312:26
yoleaux03.05.2013 - Five independent muscle compartments demo - YouTube12:26
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cpopell_howdy12:28
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nmz787paperbot: http://www.nejm.org/doi/full/10.1056/NEJMoa121109714:29
paperbothttp://libgen.org/scimag/get.php?doi=10.1056%2FNEJMoa121109714:29
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ParahSailinhttp://sci-hub.org/pdfcache/7af71d8dbbece365cf356641e6313e82.pdf14:40
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nmz787ParahSailin: any idea why paperbot didn't return a pdf, and why the pdf you sent if supplementary?15:05
ParahSailinhe tried his hardest to find a pdf on a page15:06
ParahSailinpaperbot: http://dx.doi.org/10.1056%2FNEJMoa121109715:06
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/c906603e2d65db4a9e1a924b573ba038.txt15:06
ParahSailinpaperbot: http://dx.doi.org/10.1056/NEJMoa121109715:06
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/8784c833035947f3016aac79783723c8.txt15:06
ParahSailinwell thats a bullshit DOI15:07
ParahSailini guess its published too recently15:07
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kanzurepaperbot: http://www.nature.com/naturejobs/science/articles/10.1038/nj7459-509a15:10
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/d667ac15470bf17b143ddce669e51698.txt15:10
ParahSailinhttp://sci-hub.org/pdfcache/e8a3a8d02c543ad42601128fe2e990a4.pdf15:11
kanzureoh, it's an article15:11
kanzure"Schiach has just launched SynBio axlr8r, a programme to jump-start synthetic-biology companies with funding from SOS Ventures, a venture-capital firm in Kinsale, Ireland. “The goal of SynBio axlr8r is to take an idea through proof of concept to form a company within 90 days,” he says. The first batch of 10–20 successful applicants will get US$30,000 each and a space at a science incubator in Cork, Ireland."15:13
kanzurein other words.... in cathal's home.15:13
kanzurei wonder how much equity they are taking15:14
gradstudentbotThis laproscopic camera is so easy to use.15:17
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nmz787anyone here in sf area that wants to come to a free talk by cynthia kenyon on aging at 6pm?15:22
nmz787anyone wanna join me and my buddy?15:22
nmz787she discovered the hox gene15:22
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nmz787and a bunch of crap that cell biology class didn't prepare places to link her other work to15:22
nmz787in my mind15:23
ParahSailinenver hoxha discovered the hox gene15:24
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kanzureParahSailin: i'll get you an initial rewrite of all this javascript/translator/scraper stuff in an hour or two15:29
nmz787oh15:29
nmz787http://en.wikipedia.org/wiki/Cynthia_Kenyon#Career15:29
nmz787"Her early work led to the discovery that Hox genes"15:30
nmz787ParahSailin: this mentions nothing of genes http://en.wikipedia.org/wiki/Enver_Hoxha15:31
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nmz787ParahSailin: here also, no mention of said dude http://en.wikipedia.org/wiki/Homeobox#Discovery15:32
nmz787anyway this is the event15:33
nmz787http://healthextension11.eventbrite.com/15:33
nmz787the free code is VANNEVAR15:33
nmz787seems it comes with dinner15:34
nmz787lol15:34
ParahSailinnmz787: it was his son15:35
nmz787too bad ireland doesn't have the thing that the jews/israel has15:40
kanzurebirth right?15:41
nmz787where they buy you a plane ticket if you have some jew/israeli blood15:41
nmz787yeah15:41
nmz787so sigma won't ship to my UPS store address15:41
kanzurejust change your name to mccorklewicz15:41
nmz787they want to know the lab i work in15:42
nmz787and need some letterhead from there saying i use their lab15:42
nmz787so next plan is to try and get the hackerspace to sign some bullshit15:42
nmz787strangely the lady who called from SIAL mentioned that a lot of people work out f their home15:43
nmz787s I asked if I could use my residential address15:43
nmz787but haven't heard back yet15:43
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ParahSailinship it to jmil's lab15:46
kanzurehaha yeah15:46
kanzurefrom now on everything goes to rice c/o jordan miller15:47
kanzureyou're welcome.15:47
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gradstudentbotDid you do that pset?15:50
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nmz787heh16:10
cpopellis jordan at rice now?16:14
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kanzuregot a professorship of some type16:18
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nmz787ttyl16:23
nmz787heading to that talk16:23
nmz787p.s. it comes with free diner16:23
nmz787dinner16:23
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welesBurninate, in theory co2 lasers can module up to 50kHz but in practice 20kHz is the limit18:25
Burninatecyclical?18:43
* Burninate should get into things like slew rate and nyquist and etc etc etc but doesn't care enough18:44
Burninatea 50khz sine is different from a 50kbit high-entropy digital square wave encoding every second18:45
Burninatebut even so - 50kbit would be a tiny amount of data to transmit in a second18:45
Burninatedid you do the math in re: gain?18:46
welesnot yet18:51
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