2013-08-15.log

--- Log opened Thu Aug 15 00:00:56 2013
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fennbubblegum crisis has got to be the most technofabulous anime i've ever seen: powered exoskeletons, gas turbine motorcycles, rotating space tethers, brain machine interfaces, rampaging nanotech, analog synth and zombie robots01:35
@bkeroI'm back in Portland. :301:39
@bkeroWatching Silver Spoon on crunchyroll because *shrug*01:39
Noryokushafenn check out the legend of galactic heroes02:04
Noryokushaanother great sci fi anime02:04
fennbleck.. looks dumb, and icky02:18
fennguys with poofy hair and naval style space battles02:20
fennthough i can't say i've ever seen an axe fight in outer space02:21
rigeleh?02:26
rigelptown?02:26
rigelportloo?02:26
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Noryokushalol dumb and ciky?02:53
Noryokushalol02:53
Noryokushaerr icky*02:53
Noryokushaof all the animes to call dumb and icky..02:53
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fenni just don't get the whole prussian emperor of space thing03:11
fennalso http://www.projectrho.com/public_html/rocket/misconceptions.php03:16
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Noryokushafenn its just the series lore04:25
Noryokushathey explain it later on04:25
Noryokushabut its no more silly than a lot of the premises of many shows04:25
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fennoh apparently i was watching "bubblegum crisis tokyo 2040" which is a different thing http://www.youtube.com/watch?v=hPXOlHsARrs&list=SP3C64C9F0581744B606:48
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* heath waves gm07:14
@kanzurei forgot to visit someone in toronto and now i feel bad07:16
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@kanzurei should just go back07:16
fenni thought you were moving to detroit, that's nearby right?07:19
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heathNoryokusha is in toronto07:19
@kanzuredefinitely not moving to detroit07:19
@kanzurejust visiting and plotting07:19
@kanzureoh, detroit to toronto is 4 hours by car. might as well have flown.07:20
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@kanzurexLotus: hi07:25
xLotusHello there, how are you?07:26
@kanzuredo you want something?07:27
fennare you content with the state of things?07:30
xLotusGood question, I didn't really come here for anything but maybe there is something07:32
xLotusWhat is this channel for?07:33
fenntaking over the world07:34
xLotusNeat, can I help out?07:35
fennwhat can you do?07:35
xLotusBreathe, Eat, Sleep, and I guess that's about it am I worthy?07:37
@kanzurehow did you get here?07:37
@kanzureit looks like you were in #diybio07:37
xLotusthe tubes brought me here07:37
@kanzureokay07:38
fenni find it strange how many people end up here with absolutely no sense of their capabilities07:39
xLotusWell, what do you do to "take over the world"?07:39
@kanzurehe was joking, our plans are actually much larger in scope07:39
fennbuild things, corrupt people and institutions, transcend biological limitations07:39
xLotusthat sounds like fun07:40
fennor whatever the opposite of corruption is; assimilation?07:40
xLotusassimilation is a good blanket term07:41
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xLotuslets use that07:41
fennso far, 90% of everything is crap07:41
xLotuswhat's the other 10%?07:42
fennthe crap is normally distributed, so most things are primarily crap, with a very few being 100% crap and some being 0% crap07:42
xLotusI see07:43
fennmost of my work has been figuring out what to do with the good stuff once we separate it out07:43
@kanzureand most of my work has been taking credit for whatever he does07:44
@kanzureit works out pretty well07:44
heathand most of my work is cheerleading07:45
heath\o/ go team h+07:45
xLotusSo progress doesn't seem to be going so well does it?07:45
@kanzurei think things are progressing as expected.07:45
fennunfortunately (in this case) you have low expectations07:46
heathjrayhawk: thanks for the links earlier07:46
fennkanzure do you drink soda?07:47
@kanzureno07:47
@kanzurejust water07:48
fenni dislike soda, but recently i've started drinking diet root beer for the phenylalanine in aspartame07:48
fennperhaps it would be smarter to just divide up an amino acid supplement capsule into smaller doses07:49
ParahSail1nwhat07:49
fenni knew someone would blow a gasket over that :)07:50
heathor chew gum07:50
ParahSail1nis phenylalanine really difficult to get from food?07:50
fennhm how do i phrase this... there's evidence that when a single amino acid is at elevated levels relative to other amino acids in the blood, it's transported across the blood brain barrier07:51
fennand something about insulin07:51
ParahSail1nis this the intention of this experiment? "Phenylalanine uses the same active transport channel as tryptophan to cross the blood–brain barrier, and, in large quantities, interferes with the production of serotonin.07:52
ParahSail1n"07:52
fennthe intention is to increase my brain dopamine and PEA levels without interfering with serotonin07:54
ParahSail1nit seems like the small amounts of aspartame in soda would be a poor source07:55
fenni've noticed a side effect from 500mg tyrosine supplement, but i don't know if phenylalanine has the same effect07:55
ParahSail1nunless diet coke is all you're drinking07:55
fennthere's roughly 100mg equivalent phenylalanine in 180mg aspartame in a single can of soda07:56
fennmore than that i think is too much07:56
xLotuswhat are you trying to get from taking phenylalanine?07:57
ParahSail1ni eat maybe 50-100 grams of protein a day, and that's probably 2-5 grams of phenylalanine07:58
ParahSail1ni dont think i'd notice .1 more grams07:58
fennthe intent was to increase intrinsic motivation, but the effect seems to be more like higher enjoyment of fun/interesting things07:58
xLotusI could definitely see that happening07:59
fennParahSail1n: the amino acid transporter is nonspecific, so if you flood it with other amino acids, the 100mg won't have any effect, correct07:59
fenn100 grams protein is a lot08:00
@kanzuredid you ever try any of the adderall i stuff in my face?08:04
@kanzurealso, if you think i have low expectations, can you please explicitly state better expectations?08:04
ParahSail1nso the idea is to eat well below the normal protein intake levels to decrease other amino acids and then eat lots of aspartame?08:05
ParahSail1ndoes aspartate interfere with the scheme?08:05
fennno; i'm considering adrafinil, which also starts with a and ends with l, and has some effect on dopamine levels. frankly i'm not convinced adderall isn't addictive08:06
ParahSail1nwouldnt collecting the pink packets whenever you eat at a restaurant be a more effective system than diet coke?08:06
ParahSail1nyou could even insufflate the aspartame for faster intake to the brain08:06
fennParahSail1n: yes, all true (don't know about aspartate)08:07
fennoh, no you need some gut enzyme to metabolize the aspartame08:07
fennanyway it was a quick experiment that had an interesting effect08:07
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@kanzurethe "it impacts dopamine levels" handwaving is just bullshit, that doesn't tell you anything about what's actually going on in the brain08:07
ParahSail1nim not sure you really thought this through08:07
fenni wouldn't advise anyone to do this08:08
fenni often wondered why people drink diet soda and this was a possible explanation08:10
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fenn"Of the sites tested, [modafinil] was found to significantly act only on the dopamine transporter (DAT), inhibiting the reuptake of dopamine with an IC50 value of 4 μM. Accordingly, it increases locomotor activity and extracellular dopamine concentrations" although this is a lie because it also affects a bunch of other stuff08:13
@kanzurei suspect it probably does act on all dopamine transporters, but some of those dopamine transporters matter more than others, somewhere.08:14
fenni recall reading that it only acts in certain locations, but i suck at neuroanatomy08:14
fenneven if i did know what the locations were, i wouldn't be able to deduce the consequences of that information08:15
@kanzureyou would look at studies concerning loss of function in that region (tumors, surgery) and stimulation studies (electrocution)08:16
fenn"The locus of the monoamine action of modafinil has also been the target of studies, identifying effects on dopamine in the striatum and nucleus accumbens,[9][10] noradrenaline in the hypothalamus and ventrolateral preoptic nucleus,[11][12] and serotonin in the amygdala and frontal cortex" great08:16
@kanzurealso you would check which types of neurons are in that area, then look for neurophysiology studies that characterized how those neurons behave when poked08:16
@kanzurealso you would check if anyone has cultured those neurons08:18
@kanzurethe answer is probably yes but whatever08:18
fenn"the nucleus accumbens has an important role in reward, pleasure, reinforcement learning, laughter, addiction, aggression, fear, impulsivity and the placebo effect"08:19
fenni feel like every neuroanatomy article has a sentence like that08:19
@kanzurewith a list that long, what does it not involve08:19
@kanzurei think "reward" is a hold-over from psychology studies08:20
@kanzureso just ignore thta one08:20
@kanzureaddiction might be molecular-addiction-related, but i doubt it08:20
@kanzurehard to tell what they mean.08:20
fennthis would all be simple if i had a short term memory for 128 semantic chunks instead of 708:22
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@kanzure"The principal neuronal cell type found in the nucleus accumbens is the medium spiny neuron. The neurotransmitter produced by these neurons is gamma-aminobutyric acid (GABA), one of the main inhibitory neurotransmitters of the central nervous system. These neurons are also the main projection or output neurons of the nucleus accumbens. While 95% of the neurons in the nucleus accumbens are medium spiny GABA-ergic projection neurons, other ...08:23
@kanzure... neuronal types are also found such as large aspiny cholinergic interneurons."08:23
@kanzurei like how they make it sound like only one neurotransmitter is used, but they don't explicitly say that08:23
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@kanzure"The [one] neurotransmitter produced by these neurons"08:23
fennis that not true?08:24
fenni thought most neurons only produced one type of neurotransmitter, but were receptive to multiple types08:24
@kanzuresuperkuh: hey, are you around?08:25
fennhey that's cheating08:25
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@kanzurefenn: i've never heard a statement saying either way.08:27
fennit seems that the rule is that every rule has an exception08:29
ParahSailinpaperbot: http://jn.nutrition.org/content/130/4/1058.full.pdf08:31
paperbothttp://pdf.highwire.org/stamped/nutrition/130/4/1058.full.pdf08:32
@kanzure"medium spiny neuron" sounds far too generic to be the cell type of nucleus accumbens08:36
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xLotusSo fenn are you still looking for ways to increase intinisic motivation?09:35
ParahSailinamphetamine is highly recommended09:37
ParahSailinthink of it as a catalyst to get you over the activation energy hump09:38
xLotusWhat have you tried so far?09:41
fennspecifically wrt motivation; exercise, protein, B vitamins, inositol and choline, cordyceps, modafinil, 5-MeO-DALT, noopept, caffeine, chocolate, chlorella09:59
fennchlorella was sporadically effective but i couldn't figure it out10:00
fennbuilt tolerance to caffeine after a week, and chocolate has unpleasant side effects in high doses10:01
fennmodafinil unsure of whether it had an effect on this axis10:01
fennB vitamins help, possibly better in the form of nutritional yeast10:02
fenncordyceps built tolerance after a month or so, but that's not bad10:02
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fennby far most effective was low doses (2-5mg) of 5-MeO-DALT but it's too experimental to recommend, which is why i stopped taking it10:03
fenni haven't tried amphetamine10:05
fennat this time it's unclear whether exercise and protein intake are a cause or effect, but i'm leaning toward effect10:09
fennoh, and tyrosine and aspartame10:10
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ParahSailin5-meo-dalt sounds like drugs10:15
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fennsrsly brah10:16
archelsfenn, I was thinking of messing with MAOB inhibitors10:16
ParahSailinwhat is the website these days for weird recreational "research chemicals"10:16
archelsever try that?10:16
ParahSailinhavent done that stuff in like 10 years so im a bit out of the loop10:17
fennarchels: rasagiline/selegiline (emsam) sounds interesting but i have no idea how to get a hold of it10:17
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archelsnubrain.com has it10:19
archelsPLEASE REGISTER   AND ORDER ON NEW UPDATED WEBSITE10:20
archelshttp://www.new.nubrain/shop10:20
archelshum10:20
fennhmm. they sell "etherium gold" which sets off my skeptic alarm10:20
ParahSailinis this place legit? https://researchchemicals.net/5-meo-dalt.html10:20
archelsfenn: I ordered modafinil from them about 2 years ago. it was satisfactory10:21
fennsorry ParahSail1n i haven't played the internet research chemicals game10:21
ParahSailinthey sell 5-meo-dalt on the "street"?10:22
fennno, it was acquired through participating experimenters10:22
chris_99aren't 'research' chemicals completely untested10:22
fennchris_99: hence the name, duh10:22
ParahSailinno theyve been tested by at least one dude and erowid10:23
chris_99haha10:23
ParahSailindude on erowid10:23
fennor do you mean certified to be what they claim to be?10:23
fennsome people provide third party analysis but probably not unless you're buying many grams10:24
chris_99they mention 'such as performing a gas chromatography–mass spectrometry in an adequate laboratory'10:24
chris_99as being what they're for heh10:25
fennyes it's silly, but at least you know what it is, unlike the whole bath salts potpourri thing10:25
ParahSailinchris_99: nah, usually you just have to verify it by taste10:25
fennParahSailin: i hope you're joking10:25
chris_99fenn they could be cut with any old crap10:25
fennindeed, hence "the internet research chemicals game"10:26
fennalso, why doesn't every cellphone have a built in GCMS by now?10:26
@kanzureParahSailin: thoughts? https://github.com/kanzure/papermonk-downloader-plosone/blob/master/index.js10:27
@kanzurefenn: you're avoiding my earlier question10:27
ParahSailinolfactory sense + taste is very effective substitute for gcms10:27
chris_99how do they actually come up with them?10:28
chris_99just modify existing molecules a bit?10:28
chris_99or are they radically different10:28
ParahSailinshulgin came up with a couple hundred in the 60s10:28
ParahSailinmostly people are using those same ones10:28
fennkanzure: no i haven't tried adderall or any other amphetamine-like substance10:28
ParahSailinand as some become illegal, they move on to the next, more dangerous ones10:28
@kanzurefenn: that wasn't the question i asked10:29
@kanzurefenn: uh i mean, that was a question i asked, but not the one i was referring to10:29
fennplease restate the question in the form of a question10:29
chris_99ParahSail1n, iirc in the UK, they can make molecules that are similar to illegal drugs, and get away with it10:30
chris_99i think in the US it's different?10:30
@kanzure08:04 <@kanzure> also, if you think i have low expectations, can you please explicitly state better expectations?10:30
fennchris_99: in the US it's an unresolved legal issue10:30
chris_99ah10:30
fennin some cases it's legal to possess but illegal to sell, etc10:31
chris_99gotcha10:31
ParahSailinkanzure: so you would be piping the stream to a process of pdfparanoia?10:32
chris_99they've got some pretty spectroscopy graphs10:32
fennkanzure: how's that roadmap coming along?10:32
@kanzureParahSailin: thta's one possibility, but i was going to leave it up to the user or something.10:33
aelinoeasafeorscam.com might come handy when checking out places to order RCs from10:33
@kanzureParahSailin: maybe pdfparanoiajs should be a default10:33
@kanzureParahSailin: i don't want every translator to have to pipe things through pdfparanoia on their own, that's stupid10:33
ParahSailinyou implemented that?10:33
@kanzureno, i haven't written pdfparanoiajs yet10:33
fennit's past my bedtime10:37
fennkanzure: generally this channel has turned into a watercooler and that's sad, but this is a trend in online futurist communities10:37
xLotusI don't know if this would help you since you said chocolate gave you negative effects when taking in a lot but maybe try phenthylamine the chemical10:38
fenni'd like to participate in a functioning research organization, but it seems i need to fix my own problems first before attempting to fix group problems10:39
@kanzurefenn: i can't get any of you to use any of my money to help you buy things10:39
@kanzurefenn: and when i do, you guys want to do absurd things that wont work10:39
@kanzurefenn: that's partially my fault for pimping a bad idea, but i've repented and i regret everything10:39
fennwell, buying things is only part of doing stuff10:40
@kanzurecertainly true10:40
@kanzurebut we can also just.. buy people to do the things too.10:40
fennhard to believe that after years of this i still don't know what the best "opening move" is10:40
@kanzureuh i mean, whatever the right way to say that is10:40
fennis BRL-CAD it?10:40
@kanzurethe thing about needing cad for skdb was sorta bullshit, there's no reason for a monolithic pile of crap10:41
@kanzurebut yes, brlcad is very useful if you want hardware packages to have introspection about 3d models or something10:41
fenni never wanted it to be monolithic10:41
@kanzurewell, it is/was10:41
fennit just turned out that we needed a cad library that didn't exist, so it got sucked in10:41
@kanzurewhy did we need a cad library?10:41
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ParahSailinput money into nuclear energy research10:41
@kanzurei think that was just me being silly10:41
@kanzureyour package manager shouldn't have to run NURBS intersection math or w/e10:42
fennto do sanity checking because all the data is in crap formats and the only way to resolve "does x fit y" is brute force geometry mashing10:42
@kanzureoh yeah10:42
fennif there even is a format, but 99% of the time there is not even digital data about a thing10:42
@kanzure"it's in the wiki"10:42
fennParahSailin: i am keenly interested in nuclear energy10:43
ParahSailinim assuming you dont actually have that much money though10:43
fennif this rossi thing turns out to not be bullshit i'll be all over that10:45
fennmy nickel powder disappeared in customs :\10:45
@kanzurewait, why do you really want geometry intersection code in a package manager?10:45
fennthe process for creating nano powders is pretty complex. high power lasers, partial vacuum, carbonyl compounds10:45
@kanzurea package manager on top of brlcad seems sorta weird10:46
@kanzureor maybe that's the right way to do it10:46
@kanzurei'm so confused.10:46
fennkanzure: because unlike software there's no "copy" or "delete" operation, so people have old/different instances of stuff than the person who made the package10:47
@kanzurenot my fault they need to run a package upgrade10:47
@kanzureretooling is a regular thing that you should do if you want new stuf10:47
@kanzure*stuff10:47
fennuh, there's also the third party vendor problem10:48
fennit's unrealistic to assume that people will use 100% skdb-compatible parts and machines and facilities etc10:48
@kanzureincompatible means incompatible10:48
fenngeometry comparison was part of the strategy to make it all work10:49
fenni mean look at how many reprap designs there are10:49
fennthey all do basically the same thing10:49
fennthen add in the commercial consumer-grade FDM stuff like makerbot or staples-bot or whatever10:50
fennit's unrealistic to assume everyone will have prusa-mendel v2.1 with such and such build platform10:50
fennthe only reason apple can get away with rigid hardware specs is that they brainwash their users10:51
@kanzurei don't care about that, that's irrelevant10:51
fennit's a similar problem. in the end it has to be pretty flexible anyway, just for ease of development10:52
fenni think trying to solve these basic theoretical issues is what made me give up on skdb10:53
fennanyway skdb is just one project10:54
fennit seemed like a good first step because it could tell me what the next step is10:55
fennhow the hell does debian work10:56
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archelshttp://www.pewforum.org/files/2013/08/Radical-life-extension-full.pdf11:37
archelshttp://www.pewforum.org/files/2013/08/Life-Extension-Essay.pdf11:37
archels(they even mention the singularity)11:38
@kanzureimport os; print os.path.join("./wtf", "/bin")11:39
@kanzure/bin11:39
archelswhereas you expected...11:42
ParahSailin/bin is filesystem root11:42
ParahSailinpython is full of surprises11:43
ParahSailinJoin one or more path components intelligently. If any component is an absolute path, all previous components (on Windows, including the previous drive letter, if there was one) are thrown away, and joining continues.11:44
ParahSailinthankfully the surprises are dutifully reported in the docs11:44
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@kanzurestill not what i expected11:47
@kanzureprinciple of least suprise, right?11:47
ParahSailinthats a difficult principle to implement with such a loose type system11:48
@kanzureheh "I am writing to let you know I will no longer be involved in day-to-day operations for BioCurious. As you know, I have been open about our precarious cash position since December of last year. Raymond and I have held meetings, updates, presentations, and asked for help repeatedly.  Yet despite all this, and lots and lots of hard work by me, and a handful of very dedicated others, it hasn't gotten better."12:02
ParahSailini thought the white house gave them moneys12:11
@kanzurenot that i recall?12:16
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ParahSailingod, why is there a thread about some guy's writing system on diybio12:52
@kanzurewriting system?12:52
ParahSailinyeah someone talking about his new alphabet12:53
chris_99haha12:53
ParahSailinhttps://groups.google.com/forum/#!msg/diybio/1DOhrbvAR7I/sfi93J7zDmgJ12:53
chris_99the point of that being?12:54
ParahSailinfaster science obv12:55
chris_99heh12:55
ParahSailinclearly our slow latin script system and the lack of a wikipedia for sharing results than renders pdfs automatically are the two bottlenecks preventing the singularity of diybio science12:57
@kanzurehaha12:58
ParahSailinand then we all just need to learn ithkuil13:00
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nmz787ParahSailin: actually he never said it would be faster13:16
nmz787he actually mentioned 'art' in a comment13:16
nmz787don't we have some audio smart people in here?13:16
@kanzurecathal's date format is bad, he should suggest ISO 8601 instead of using slashes13:16
nmz787i can't find the average track depth for a gramophone record13:17
@kanzurealso, i disagree about markdown being particularly parseable13:17
nmz787kanzure: obviously every wiki /does/ it13:17
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nmz787so parsing engines already exist13:17
nmz787wikipedia works! how can you argue that?13:17
@kanzureyes, but it's ambiguous13:18
@kanzureit's as if you're ignoring all of the people who wrote the parsers13:18
@kanzurethey are not all idiots you know..13:18
ParahSailinthere's javascript libraries that translate md to html13:18
* kanzure looks for a good description of the problem13:19
@kanzure"Parsing SGML is context-free, whereas wikitext and markdown are both context-sensitive, and therefore more complex to write parsers for."13:19
@kanzureno, that wasn't it..13:19
nmz787kanzure: i'm not ignoring them, i'm saying they already did the work for you13:19
@kanzurethey didn't, though13:20
@kanzurethey just generate html13:20
nmz787?13:20
ParahSailinthere's an existing wikitext parser, and all you have to do is make your project in php to use it13:20
nmz787it's stored as wikimarkdown13:20
nmz787and rendered as html13:20
@kanzureParahSailin: :)13:20
@kanzureParahSailin: but that's not the only reason it's a bad idea13:20
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@kanzure"This is a great initiative and I have huge hopes for this going forward. But I want to make one recommendation: Don't write a parser. Instead, base the standard on a parser-generator-language, like that of ANTLR, so code can be generated from this standard language to whatever programming language or platform people want to parse Markdown in. Unless you're planning on implementing the parser in the 17 different languages supported by ANTRL ...13:21
@kanzure... out of the box, defining the MArkdown language in ANTLR and letting it generate parsers for these 17 languages makes a hell of a lot sense. Please consider it. Hard."13:21
@kanzureblargh, but where's the one about markdown ambiguity13:21
@kanzure"Some cleanup and tweaks for ambiguous edge cases that exist in Markdown due to the lack of a formal specification"13:21
@kanzurei feel like the internet used to be very different, or maybe i was in a different world, and all the stuff i remember happens to be things that nobody else knows about13:22
@kanzuretoo bad i didn't commit the entire internet to memory, only the urls13:23
nmz787plenty of wikis out there, already parsing their silicon brains out13:23
@kanzurejust because a parser exist does not mean that the specification exists13:23
nmz787dunno how you argue shit that exists/works13:23
@kanzureand saying "the implementation is the specification" is a really bad idea13:23
nmz787you should pay to join ISO so you can argue specs13:24
nmz787so what if it's hard? computers do hard stuff for us13:25
@kanzurewhere did i say hard?13:25
ParahSailinthis is such a pointless thing13:25
@kanzureParahSailin: you mean, i can't convince nmz787 to use specifications?13:25
nmz787the only spec i heard was markdown13:26
@kanzurethere is no spec13:26
@kanzurefor markdown13:26
@kanzurewell, no well-defined grammar, at least13:26
ParahSailinuse html as the interchange format and let people generate html however they want13:26
@kanzurebut that's what a specification means in this context13:26
nmz787journals only have so many different kind of elements13:27
nmz787There's text, heading for sections, lists, and figures with text below or above them13:29
@kanzurewhy are you saying that?13:29
@kanzuresaying these things does not turn markdown into a rigorously-defined language13:29
@kanzurei was just trying to prevent a catastrophe13:29
nmz787no, i'm just saying maybe markdown isn't required13:30
@kanzureokay. for what, again?13:30
nmz787if there are only so few distinct elements13:30
jrayhawkhttp://johnmacfarlane.net/pandoc/diagram.png pandoc13:31
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ParahSailinthis is such a pointless thing because this is not addressing an actual problem13:31
@kanzureoh, that too.13:32
ParahSailinthere are not thousands of people who are being held back from sharing results by the lack of a wikiplatform13:32
@kanzureit would be nice if journals would publish in something other than pdf and html, but i don't think that's what nmz787 is trying to do13:32
ParahSailinthere are also not a million different formats of files flying around confusing everyone13:33
@kanzurejrayhawk's image was just showing what pandoc can do, relax13:33
@kanzure-relax13:33
nmz787crazy graph13:35
nmz787ParahSailin: formatting is a PITA though, I'd use some plug-n-chug app13:36
nmz787especially with libreoffice or google docs13:36
@kanzurenobody uses either of those for scientific reporting13:36
@kanzureor, they shouldn't.13:36
klafkai'd hope not13:37
ParahSailindo the science first, then report13:37
nmz787i did13:37
nmz787reporting is why i failed a class13:37
@kanzureis it because you forgot to cat your data into your file?13:38
nmz787because it was too PITA that I said fuck it and just didn't report13:38
ParahSailinits hard to save the file in the editor?13:38
nmz787?13:38
nmz787saving is easy13:38
nmz787that's not a PITA13:39
nmz787paperbot: http://www.sciencedirect.com/science/article/pii/S027869151300550413:39
ParahSailinthen email it after you save it13:39
ParahSailinor something13:39
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/Curcumin%20binds%20tubulin%2C%20induces%20mitotic%20catastrophe%2C%20and%20impedes%20normal%20endothelial%20cell%20proliferation%20.pdf13:39
nmz787?13:39
ParahSailinreported; shared.13:39
nmz787i don't get how email does automagic formatting13:39
ParahSailinuse a different editor/save format?13:40
nmz787that has nothing to do with formatting13:42
ParahSailini use wp51 because thats what im familiar with13:42
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nmz787doesn't that cost money?13:47
ParahSailinnah im pretty sure you can still find floppies of it from a friend13:50
nmz787this is a pretty good read http://blogs.scientificamerican.com/the-curious-wavefunction/2013/07/31/what-does-mercury-being-liquid-at-room-temperature-have-to-do-with-einsteins-theory-of-relativity/13:54
nmz787paperbot: http://link.springer.com/chapter/10.1007/BFb001857813:56
paperbothttp://libgen.org/scimag/get.php?doi=10.1007%2FBFb001857813:56
ParahSailinhttp://sci-hub.org/pdfcache/c0c94b13fdba15f9d7d34e950f7a999d.pdf14:00
nmz787Not Found14:00
nmz787oh, wait, the d at the end wasn't in my copy buffer14:01
nmz787ParahSailin: thanks, how did you get that to work?14:01
ParahSailinhaxkell14:01
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nmz787paperbot: http://nar.oxfordjournals.org/content/17/17/6959.abstract14:05
paperbothttp://libgen.org/scimag/get.php?doi=10.1093%2Fnar%2F17.17.695914:05
nmz787ParahSailinbot!14:05
ParahSailinpaperbot: http://dx.doi.org/10.1093%2Fnar%2F17.17.695914:08
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/9ed2cdf6d5cc0ab6fe73fc477ced8de.txt14:08
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heathdwolla was forced to close mt.gox, and now bitinstant folds because of FINCen Regulations, wtf15:09
heathclose mt.gox's account*15:09
@kanzurei thought mtgox has japanese bank accounts or something15:10
heathit's based in japan15:10
heathbut everyone used dwolla to get their funds out15:10
heaththere isn't a service for instant payment15:10
@kanzureoh, i didn't know it was dwolla. that's funny.15:11
heathmost are resorting to wire transfers and over the counter15:11
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heaththis sucks15:11
@kanzurewhat's wrong with wire transfers?15:12
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heatha friend of mine 500USD scheduled to transfer from mt.gox over four weeks ago15:12
heathit's the time issue, it takes forever now to get money out15:12
heathbit instant was the way to get it out when mt.gox's dwolla account was closed15:13
@kanzurego through second life15:13
* heath wonders how bitinstant was making money15:13
heaththat might work, re:sl15:22
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Noryokushalazy day today16:24
Noryokushajust spent it reading and cleaning16:24
Noryokushasup heath16:24
@kanzurefenn: we could just start doing periodic purges of the watercooler crap16:25
heathNoryokusha: heya16:26
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heathagaiin?16:27
heathi refuse16:27
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ParahSail1nwatercooler crap?16:39
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@kanzureParahSail1n: fenn is angry that i am not working hard enough on hplusroadmap things16:49
@kanzureParahSail1n: we used to do things in here, you know. long before you joined.16:49
ParahSail1nhm, like what?16:50
@kanzurewell at one point we had a physical hackerspace i think16:50
ParahSail1ni think folks here are pretty geographically dispersed16:51
@kanzurefenn used to live in my closet16:51
ParahSail1nah right you told me that16:51
ParahSail1nbut the bay area folks were too cool to match you16:51
@kanzurei'm sorta boring to live with, heh16:52
@kanzure"DO CODE" "MAKE THINGS BEEP"16:52
ParahSail1nwe should start a nuclear program under the auspices of one of the sovereign american indian nations16:53
@kanzureParahSail1n: were you around when there was an actual transhuman technology roadmap that we were building things according to? or wanting to build things according to.16:54
ParahSail1ni saw a roadmap on gnusha once16:54
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@kanzureParahSail1n: btw, phillyj is that jeswin person that you mentioned16:54
@kanzurethat might have been drazak16:54
ParahSail1njeswin?16:55
@kanzureokay yeah it was drazak then16:55
@kanzureso what's the papermonk status?16:55
ParahSail1nso whats next on the roadmap anyway?16:57
ParahSail1nmusky knocked long distance travel off our list, so whats next16:57
@kanzurei forget16:58
ParahSail1nim a bit disappointed that gates is the only billionaire doing anything about nuclear energy16:59
@kanzuresomething about hardware packages, something about transcranial stimulation, something about dna16:59
@kanzurewhat was the disease that gates is focusing on? malaria? i keep forgetting.16:59
ParahSail1nthese guys did a lot more than gates fdn ever did, at a pittance of the budget http://www.againstmalaria.com/17:01
ParahSail1nbut at least gates is not doing things as wasty-money as some people17:01
@kanzuregates has the unfortunate problem of growing 5-8 billion/year and not being able to spend fast enough17:03
ParahSail1ni didnt realize msft was still growing17:03
@kanzuregates has other assets. his portfolio gets some percent interest on the market.17:04
@kanzure8% return on 70 billion is.. a lot.17:04
ParahSail1nhuh, i thought his portfolio was mostly msft and that hed take huge hit selling it17:04
ParahSail1ndid he get out in 1999 or something?17:05
@kanzurehah i didn't know this one "Research Gate, a social networking site for scientists. Bill Gates invested $35 million in the site." so that's where research gate comes from.. i thought it was just a scam or lots of spam.17:05
ParahSail1ni dont think its too hard to blow billions of dollars17:06
ParahSail1ni think he just wants to keep the #1 spot17:07
ParahSail1nbut this is water cooler crap17:07
@kanzure"In 1999, his wealth briefly surpassed $101 billion"17:08
@kanzureyes17:08
ParahSail1nhow much spare cash do you actually have lying around17:08
@kanzureenough17:08
ParahSail1nthat will help me narrow down what options are available17:08
ParahSail1nobviously you dont have enough to start a sioux thorium project17:08
ParahSail1nor do you17:08
@kanzuredo i want to do that though?17:08
ParahSail1nsure, energy is gonna end up being pretty important17:09
@kanzurebut anyway, there's this interesting trend where if i tell you have $10M or $100M or whatever, suddenly all projects become ridiculously inflated17:09
@kanzurefenn used to build usable things for under $1k that would otherwise cost $100k or whatever17:09
@kanzurebut i guess i broke him or something17:09
* kanzure pokes fenn17:09
@kanzureif i have to spend above-market-price on everything, i'll run out of money before i get to anything interesting17:09
ParahSail1nheh17:12
@kanzurepart of the secret is to pick projects that are actually achievable17:13
@kanzuremost of the technology that we need/want in this world are actually not "theoretical".. they already exist and work (somewhat).17:13
@kanzurei guess plato said the same thing about math17:15
@kanzureParahSail1n: what was the serum project you wanted to do a while back?17:18
ParahSail1ni was making a liver cell line condition minimal medium when i got kicked out17:19
@kanzurecondition?17:20
ParahSail1nliver cells churn out albumin and other proteins into their medium17:21
ParahSail1ni had gotten the liver cells to survive in regular MEM17:21
ParahSail1ni got kicked out of that lab because the cells werent very adherent, so it looked like an infection in my plates17:24
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ParahSail1nnuclear energy might become moot if the pv folks manage to continue the power law decline of costs17:28
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Noryokusha:D I'm one of the pv folks17:31
Noryokushadssc's mostly17:31
ParahSail1nyou of the opinion that it would a waste of money to develop fission reactors further because pv will eventually become ridiculously cheap?17:32
Noryokushano, it's another area of research17:34
Noryokushascience is never useless17:34
Noryokushait might be useful for another purpose17:34
ParahSail1nim of the school of maximum instantaneous growth rate17:35
ParahSail1ni can show you plenty of useless science17:36
ParahSail1nso which will grow the prosperity of civilization at a greater rate, money in pv or money in fission?17:37
@kanzurepapermonk-downloader-plosone needs to get its request.get call mocked17:37
@kanzureoh actually, i suppose one possibility is to replace its .test() method with something that always returns true, then fetch something hosted on localhost as the url17:39
@kanzurebut this wont work for in-browser testing (if anyone ever wants to attempt that)17:39
@kanzurehttps://github.com/flatiron/nock okay looks like i want replyWithFile17:40
cogitokatdidn't I do that?17:40
ParahSail1nwell, assuming that pv is going to be the useful power source, next we need to solve peak phosphate17:41
@kanzurecogitokat: you didn't use replyWithFile17:42
@kanzurecogitokat: of course, i could be looking at the wrong thing17:42
ParahSail1ni think a kelp farming operation might be able to extract phosphate from the ocean17:43
cogitokatkanzure yes huh, I did.17:43
@kanzurecogitokat: well, it got lost then17:44
cogitokatI made reply with string test and reply with file test17:44
cogitokatbooo17:44
cogitokatyou should have a replies folder in tests in those papermonkmodules and tests.js has two tests.17:45
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@kanzuregrr this is not working18:09
cogitokatkanzure, what isn't?18:10
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@kanzurethis works in the node console:18:14
@kanzurevar scope = nock("http://example.com").get("/paper").replyWithFile(200, "./tests/data/html/test.html")18:14
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@kanzurerequest.get("http://example.com/paper", function(error, response, body) { console.log("body is: " + body.toString()); });18:14
@kanzurebut it doesn't work in a test.18:14
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@kanzurehmm18:35
cogitokatkanzure, I imed you things.18:36
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@kanzureah, the problem was that i wasn't calling jsdom's window.close()18:45
@kanzurealso, jsdom is pretty slow18:46
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@kanzurei wonder if anyone has done performance benchmarks on jsdom18:52
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Not-002[kanzure/papermonk-downloader-plosone] kanzure pushed 2 commits to basic-http-mocking [+1/-0/±3] http://git.io/iDgTOQ19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure 6aec849 - initial mocking of an http request This is a simple mock that returns the expected html of the page to test the downloader against. For now, the only tested property is the title found in the html.19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure cd0a295 - stop jsdom from hanging the entire test system The window must be closed because otherwise the test suite never ends itself. Also, jsdom is really slow and is overkill for a task like "extract the <title> of an html document". It's probably even slower inside a browser's javascript environment, but I haven't tested that yet.19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure tagged 4363ee9 as v0.0.3 http://git.io/H31giQ19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure pushed 4 commits to master [+2/-0/±7] http://git.io/AC3DDg19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure 6aec849 - initial mocking of an http request This is a simple mock that returns the expected html of the page to test the downloader against. For now, the only tested property is the title found in the html.19:02
Not-002[kanzure/papermonk-downloader-plosone] kanzure cd0a295 - stop jsdom from hanging the entire test system The window must be closed because otherwise the test suite never ends itself. Also, jsdom is really slow and is overkill for a task like "extract the <title> of an html document". It's probably even slower inside a browser's javascript environment, but I haven't tested that yet.19:03
Not-002[kanzure/papermonk-downloader-plosone] kanzure 1975e49 - Merge branch 'basic-http-mocking' into master19:03
Not-002[kanzure/papermonk-downloader-plosone] kanzure 4363ee9 - version bump to: v0.0.3 Hooray! HTTP mocking.19:03
@kanzurehmm it is displaying the same commits multiple times19:03
@kanzurethat is a little annoying19:03
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@kanzure"Preliminary end-to-end benchmarks suggest that cheerio is about 8x faster than JSDOM"19:07
@kanzureweird that jsdom doesn't use a "forgiving" html parser. that doesn't make sense. its goal is to implement the html/dom, which wont work if you have a strict parser..19:10
@kanzureheath: what was the selector library you wanted?19:10
@kanzureno wait, that was ParahSail1n19:10
ParahSail1nsizzle?19:11
heathjsdom uses nwmatcher19:16
heathhttps://github.com/dperini/nwmatcher19:16
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ParahSail1npaperbot, http://www.jneurosci.org/content/33/33/13460.abstract20:06
paperbothttp://libgen.org/scimag/get.php?doi=10.1523%2FJNEUROSCI.1333-13.201320:06
ParahSail1npaperbot, http://dx.doi.org/10.1523%2FJNEUROSCI.1333-13.201320:07
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/A%20Dramatic%20Increase%20of%20C1q%20Protein%20in%20the%20CNS%20during%20Normal%20Aging.pdf20:07
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heathkanzure: http://jsperf.com/selector-engine-battle/520:24
heathdunno if you care20:24
heathwhen was sizzle officially included in the jquery source?20:25
heathseveral years ago20:26
ParahSail1nwhen was sizzle split off from jquery source you mean?20:27
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@kanzureis sizzle capable of parsing html from a string, or does it require the DOM to be loaded already?20:40
ParahSail1nno sizzle just calls getElementBy* shit20:45
ParahSail1nyou use it with jsdom20:45
@kanzureah. i'd like to try to not use jsdom.20:51
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ParahSail1narent you already using it?21:16
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@kanzureyes, i'd like to remove it and use something not so slow21:20
@kanzurethere's no reason to use jsdom in this case because it's completely overkill21:20
ParahSail1noh, jsdom is slow?21:21
@kanzurevery slow21:21
@kanzureand i bet it's worse in a browser (unless it uses innerHTML or something)21:21
ParahSail1nthat would be completely silly to use jsdom in a browser21:21
@kanzureit takes 4-5 seconds to parse http://www.plosone.org/article/info:doi/10.1371/journal.pone.007133421:21
@kanzurewell, the point of writing this in javascript is that it could automatically be used in a browser or server-side or w/e21:22
@kanzureit might be slower but the point is it would still work (potentially)21:22
ParahSail1nso you want to do a pull parser instead of full dom html parsing?21:22
@kanzure(with the exception of XHR/CORS problems, which can be figured out via proxies or something)21:22
@kanzureoh, uh, maybe.21:22
ParahSail1nman though id hate to write that without cool parser combinators21:23
@kanzureheh this one seems useful, http://requirebin.com21:24
@kanzureit's a pastebin for javascript that uses require(), it just dumps everything through browserify21:24
ParahSail1nmaybe cheerio is faster?21:26
@kanzureyeah, i'll try that in a sec21:26
ParahSail1nor i guess that uses node-htmlparser so you can just go straight to that21:32
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Not-002[kanzure/papermonk-downloader-plosone] kanzure tagged 337c584 as v0.0.4 http://git.io/zHArcw21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure pushed 5 commits to master [+0/-0/±5] http://git.io/faS-UQ21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure ad65c5e - replace jsdom with cheerio Wow, that's a significant performance improvement. All tests are passing.21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure a72dd62 - Merge branch 'replace-jsdom-with-cheerio' into master21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure 597476d - remove jsdom from package.json21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure b0f7f48 - Merge branch 'replace-jsdom-with-cheerio' into master21:43
Not-002[kanzure/papermonk-downloader-plosone] kanzure 337c584 - version bump to: v0.0.4 This version has a performance improvement thanks to replacing jsdom with cheerio.21:43
@kanzurei'm sure even better performance is possible if we actually spend time profiling why the hell that last test takes so long21:44
@kanzuretime node tests.js gives me 0m0.283s using cheerio21:44
@kanzurewhereas the version with jsdom is 0m5.821s21:45
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Not-002[kanzure/papermonk-downloader-plosone] kanzure pushed 3 commits to master [+2/-0/±5] http://git.io/atrpdQ23:08
Not-002[kanzure/papermonk-downloader-plosone] kanzure ab2d3a0 - split parser out into a separate file23:08
Not-002[kanzure/papermonk-downloader-plosone] kanzure 8e6e38b - expose parse functions on module and write tests23:08
Not-002[kanzure/papermonk-downloader-plosone] kanzure 1cffdfe - Merge branch 'separate-parser' into master Clean up index.js and move out the html-specific stuff into ./src/parse.js instead of piling up into the index file. Also, there are some new tests that look specifically at the parser functions.23:08
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