2014-05-06.log

--- Log opened Tue May 06 00:00:52 2014
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@_archelspaperbot: http://www.mitpressjournals.org/doi/pdf/10.1162/NECO_a_0058700:46
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/fb2998da70dff3533b290188199dce30.pdf00:46
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@_archelsI don't like their premiss of simulating neural networks on general-purpose processors00:56
@_archels"With the increasing importance of cluster-based computations and GPU acceleration, we cannot introduce a new simulation scheme without discussing parallelization possibilities."00:56
@_archelsmaybe you should take that as central? maybe?00:57
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@_archelsI wonder what improvement you could obtain by using an FPGA instead of a GPU to evaluate coupled PDEs00:59
@_archelsat the same power budget, let's say01:00
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gene_hackerwell there's this:http://www.hpcwire.com/2014/05/05/brain-inspired-device-simulates-one-million-neurons/01:04
gene_hackerif mass produced, you could have a system with as many neurons as an octopus, for $200,00001:06
@_archelsyeah, those chips are pretty cool01:08
@_archelsbut it might be a while till they hit retail01:08
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gene_hackeryou can already buy stuff like this:http://www.cognimem.com/products/chips-and-modules/CM1K-Chip/01:11
gene_hackerjust doesn't have as many neurons01:11
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@_archelsthe architecture of their neural net is hardwired though01:14
@_archelsfor instance, you couldn't do reservoir computing with those chips01:14
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gene_hackerit looks like it isn't completely hardwired: https://www.stanford.edu/group/brainsinsilicon/documents/BenjaminEtAlNeurogrid2014.pdf01:22
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@_archelsno, NeuroGrid is cool, I was referring to that CM1K chip01:25
gene_hackeroh01:26
gene_hackeryeah that's right01:26
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jrayhawkchronic from moreutils makes gnupg a lot more tolerable01:46
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AshleyWafflemusic https://www.youtube.com/watch?v=72B_GI8hy6o08:46
eudoxiakanzure: here's an old cool thing https://www.youtube.com/watch?v=TkpIuD5io_k08:47
eudoxiatwo of the interviewees are dead08:48
eudoxias/dead/cryopreserved08:48
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@heathatom text editor is open source now10:45
eudoxiafinally my text editor will be as fast, responsive and stable as my browser10:45
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FourFireHas anyone here ordered and received Soylent ?10:56
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cluckjyou're suggesting someone in a channel obsessed with DIY is going to buy something for which the recipe is freely available? :P11:01
kanzure.title http://plane.ardupilot.com/11:07
FourFirewell, has anyone DIY'ed soylent?11:07
yoleauxFixed-wing aircraft UAV11:07
kanzure.title http://plane.ardupilot.com/wiki/common-using-the-3dr-radio-for-telemetry-with-apm-and-px4/11:07
yoleauxcommon-Using the 3DR Radio for Telemetry with APM and PX411:07
kanzureradio firmware source code https://github.com/tridge/SiK11:08
kanzurehttps://github.com/tridge/SiK/blob/master/Firmware/radio/packet.c11:09
kanzurehuh this looks an awful lot like the samba source code i was digging through a while back11:09
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kanzurehrm, nevermind. the style is different.11:10
cluckjI haven't; too many carbs in it11:10
FourFirecluckj, if you DIY you can change that...11:12
gradstudentbotYou know, I hear you make more money being a garbage man.11:13
kanzuresoylent is really good at marketing11:13
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FourFirewell I'm evidence of that...11:16
cluckjI like to eat real food tho11:17
xmjdoesnt soylent make you grow manboobs11:17
FourFireyeah so do I11:17
xmj...due to some hormone in it?11:17
FourFirexmj does it?11:17
cluckjlol11:17
chris_99haha11:17
FourFirewhich version?11:17
FourFire[citation needed]11:18
chris_99why would they add anything that does that heh11:18
gradstudentbotArgh, what do you mean you don't accept LaTeX submissions??11:18
kanzurechris_99: because nutrition is not that straightforward; any moron can make a mistake like that11:18
xmjFourFire: iirc soy beans contain estrogen11:19
chris_99oh i did not know that xmj interesting11:19
FourFireI read this story about this girl who lived on chucken nuggets and chips for 17 years11:19
kanzureminor amounts of estrogen aren't going to radically alter your female-axis traits11:19
FourFireseemed mostly healthy for most of that time, but pale, eventually collapsed due to deficiencies11:19
xmjchris_99: just take my half-knowledge as attempt for nerd-baiting and do some research11:20
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FourFirexmj afaik the only soy in soylent is an emulsifier, which they included so that they could keep the name11:20
chris_99xmj heh ok11:20
xmjlol11:21
xmjchris_99: soylent manboobs has a ton of interesting links, actually11:21
chris_99lol11:21
FourFirebut there's loads of DIY open source recipes made by hobbyists which have other things in it11:21
chris_99i don't really see the appeal of eating sludgy stuff myself, but it seems an interesting idea11:21
kanzure"DIY open source recipes" ugh11:22
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cluckjlol11:22
kanzure"libre DIY open source recipes"11:22
xmjmyself i just noticed that this week has the potential to be steak week11:22
FourFirethere's a minority of the population which expect great benefit out of having quick, healthy cheap meals11:22
JayDuggerI eat a lot of spirulina, chlorella, etc. Not soylent, but green sludge.11:22
cluckj"free/libre DIY open source recipes"11:22
kanzurecluckj: i feel like i'm herding cats11:23
xmjyou can remove the DIY as it's implied in recipe.11:23
FourFireok, fine some of that sentence was redundant kanzure11:23
xmjand recipes are open source per se, no?11:23
cluckjprobably free, and open source too11:23
JayDuggerVolunteer with your local rescue group to get a taste of cat herding.11:23
FourFireJayDugger, how does that work for you?11:24
cluckjtry being an academic to get a taste of cat herding, am I right gradstudentbot?11:24
gradstudentbotOh that's interesting, do you want to write a paper together?11:24
cluckjyes, yes I do11:24
JayDuggerLaser pointers make cat herding easy for a large fraction of cats.11:24
chris_99heh11:24
xmjthen 'free food' should work in academia.11:26
cluckjit only works really well on broke grad students11:27
FourFirecluckj, yeah that's most of the minority I'm talking about11:28
chris_99which includes most grad students11:28
FourFireYoung, nerdy bachelors11:28
@ParahSailinsoy beans do not contain estrogen11:28
cluckjafter the first few years of grad school you figure out how to live well on little money11:28
cluckjso that excludes PhD candidates and ABDs11:29
cluckjFourFire, and bachelorettes11:29
chris_99cluckj, are you a PhD student then?11:29
cluckjchris_99, I'm an ABD11:29
cluckj(all but dissertation)11:29
chris_99what's that?11:29
FourFirethe Hackerschool soylent recipe: http://www.cookingfor20.com/2013/06/18/hacker-school-soylent-recipe/11:30
kanzurethat means he hasn't written a diissertation. isn't that obvious?11:31
kanzurewhy do you all suck11:31
cluckjlol11:31
cluckjhey I explained myself :P11:31
chris_99oh heh sorry11:32
kanzure*dissertation11:32
cluckjchris_99, I was sassing kanzure11:34
kanzuresass is better than scss11:37
chris_99whatcha doing as a subject cluckj if you don't mind me asking11:38
kanzurestudying you11:38
kanzurewatching you11:38
kanzurenormal creepster stuff11:38
chris_99haha11:38
cluckj^^11:38
gradstudentbotNope, that's not even remotely possible.11:39
FourFire"<kanzure> why do you all suck" maybe you're just viewing us with suck coloured spectacles11:40
kanzureyes, i'm sure there's a rational or good reason why you're so fucking vulnerable to shitty marketing11:41
FourFireeveryone's brain is broken11:41
FourFiresome are more broken in certain ways than others11:42
FourFiresome broken brains have found how to exploit some breakage11:42
kanzuresee? you already found a way where i'm not viewing you through "suck coloured spectacles".11:43
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FourFireyour brain is broken too...11:46
cluckjO_o11:46
cluckjchris_99, 'amateur' science11:46
chris_99oh cluckj11:46
chris_99i remembr now11:46
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fennmmm soylent12:04
kanzurefenn, what about a place in detroit12:08
kanzurei wonder if there's lots of equipment still floating around12:08
kanzureor if all the good stuff is taken12:08
fenni'm sure "the good stuff" left thirty years ago12:10
fennso, detroit is basically canada12:10
fenncanada with roads and 3 phase power12:10
kanzurei believe canada has one of those12:10
fenni am really trying to reduce the amount of infrastructure required, not optimize my processes for having lots of space and mass12:11
fennanyway, detroit is interesting in its own right12:11
fenni hear people are growing their own food in public parks because there are no grocery stores12:11
kanzuremumble mumble ribbon farms12:12
fennyes i've seen that on aerial maps but didn't know what it was called12:13
fennthey can be much longer than in the image (higher aspect ratio)12:13
fenn"Near Detroit, the ribbon farms were about 250 feet wide and up to three miles long."12:13
fennthat could be cool, to have your own monorail12:14
fennand a boat12:14
kanzurewhat about somewhere in china12:15
fenn"12:16
fennNext, add about 75 g of brown sugar" what???12:16
fennexcept for the gratuitous sugar, "hacker school soylent" is identical to what i used to eat for breakfast baked into an "oat waffle"12:17
fennand s/olive oil/butter/ because butter is better in all respects12:18
cluckjlol12:18
fennand dutch cocoa loses out on a lot of the benefits of cocoa, it's basically been destroyed by the processing12:18
cluckjso if you bake soylent, you get cookies?12:19
fennpretty much12:19
fennit's more like a dense savory cake12:19
gradstudentbotMy matlab crashed.12:20
fennonce you cook it, it lasts for at least a week (in waffle form)12:20
fennalso i used pea protein or whey12:21
fennor just powdered milk12:21
fenntoo much milk is too salty though12:21
gradstudentbotWho the hell stole my pipette?12:22
xmjdoes gradstudentbot have trigger words, or does he randomly say stuff?12:22
gradstudentbotMOTHERFUCKER OUR PAPER JUST GOT LEAKED12:22
xmjlol12:23
gradstudentbotxmj that is for me to know, and you to figure out12:23
chris_99haha12:24
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caterni'd eat soylent waffles12:25
fennthe trick to good waffles is adding lots of butter to the waffle iron before you add the batter12:27
fennalso the kind where you can flip it over helps, and with the big squares12:28
FourFireso fenn, what you're saying is of you swap out all these ingredients ,and skip some, it's exactly the same as something you once used to eat?12:28
fennyes12:28
delinquentmepaperbot, http://www.ncbi.nlm.nih.gov/pubmed/1691932712:28
paperbothttp://libgen.org/scimag/get.php?doi=10.1016%2Fj.biomaterials.2006.07.03012:28
kanzurethink of all the reduced shipping time12:29
kanzureyou'll save millions of years of waiting for shipments from shady chinese suppliers12:29
fennFourFire: i added molasses, which is brown sugar without the sugar, and i also added lecithin, and oat flour, and vegetable protein, so it's really the same thing12:30
fenni feel pretty comfortable recommending this to people12:30
fenni'm not sure about the flax12:30
fennalso i'd add magnesium12:31
fennbut it's a pretty good soylent12:31
fennif you cook it, put the emergen-c in your beverage instead12:34
fenngreen tea goes well with oat waffles12:35
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kanzurefenn, which dsps should i get?12:53
fenni don't know12:54
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fennmsp430 is pretty standard, but might be too low powered12:54
kanzurealso i need to find an appropriate devkit12:55
fennthere were several TI reference implementations, why not just use one of those?12:55
kanzurehuh?12:56
fennthe 430MB linux image was meant to run some beagleboard-like thing12:57
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kanzureand you're saying i should just use that image?12:59
kanzureand not order a devkit thing?12:59
kanzure"The words though, have now been followed up by actions... as RIA reports that Russia’s Black Sea Fleet "will get new submarines and next-generation surface ships", Russian Defense Minister Sergei Shoigu said Tuesday, voicing his concern at the increasing maritime activity of the US Navy"13:01
fennno i'm saying you should look at whatever hardware system they had been developing for13:01
kanzureman, why can't i have a fucking black sea fleet?13:01
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caternis it okay to buy soylent.me soylent, or is that radically stupid? just want to test my ability to have such a monotonous diet before investing in lots of research13:09
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fenncatern i'm currently fighting with diy.soylent.me trying to get my recipe in the system, but i'd suggest following the "hacker school" version for a month with local grocery store ingredients before investing a lot into optimizing it13:21
caternfenn: but i'm lazy and don't want to have to buy the ingredients and make it myself13:22
caternuntil I know it's worth my time13:22
fennwhat's your time worth? you're on IRC13:22
fennanyway it takes less time to mix some powders in a jar than it does to cook a normal meal13:23
kanzuremy time is worth lots13:23
kanzure(some is currently grocery shopping for me, supposed to deliver it 20 minutes ago. ugh.)13:24
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fennso the future hasn't arrived in austin yet huh13:25
caternfenn: yeah yeah, I should do it the right way and follow some recipe I can tailor to myself, but,13:25
fenncatern: no, the point is you should see if you like this radical lifestyle change before throwing a lot of money at something you will potentially waste13:25
kanzurefenn: what do you mean the future?13:25
caternfenn: that's my point though13:25
fennautomated grocery deliveries, the fridge that knows what you ate and what to restock etc13:25
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kanzureif i a person is delivering it, is it automated?13:26
caternfenn: 85$ for 21 servings of soylent seems a lot better deal than investing a lot of time figuring out and making my own stuff13:26
caterna better way to try out the radical lifestyle change13:26
fennkanzure: no, but ordering online is a value13:26
fenncatern: oh i didnt realize there were such small orders available13:26
kanzurei did order online13:26
fennkanzure: see there should be a tube about 100cm in diameter that goes under your house, and little cylindrical robots get pumped through and stop and discharge your groceries into a little box that beeps at you13:28
kanzuresheena was very surprised by how many stores had pneumatic tubes around here13:28
kanzure"you do your banking in pneumatic tubes?"13:28
caternfenn: so can I assume that you don't have any problem with soylent.me soylent now that you know that?13:28
fennbut having a UPS guy drive around and run up to your porch isn't such a terrible compromise for now13:28
catern(as a first try)13:28
gradstudentbotYou can't guarantee that.13:28
kanzurenot a ups guy, just random http://taskrabbit.com/ person13:28
fenncatern: i haven't been keeping up with soylent.me as much as i probably should, but the first version of the recipe seemed a lot better than most "fad diets"13:29
fenntoo much sugar but meh13:29
caternoh ok13:29
fenni hear they are keeping the recipe secret? that seems like a really bad idea13:30
caternproprietary = bad13:31
fennhopefully it doesn't have 400g of manganese :P13:31
fenn"here have some battery paste"13:31
fennneeds more vitamin C13:32
fenn90mg is not enough13:32
fenni wonder why they did that13:33
kanzurei'm gonna buy http://www.amazon.co.uk/The-Apex-Explorer-Plus-Microscope/dp/B001BS00KK/ any objections?13:33
kanzurethis is the one for eleitl13:33
fennlooks ok13:35
fennthis is kinda iffy "Before plugging the scope in, I checked the circuit board, and yes the 2 coils had detached. They were easily soldered back and all was fine.13:35
fennanyway a microscope is not an electronic item13:36
kanzure"Unterbrunner St"13:36
fenncatern: i heard soylent.me was being slow and you had to wait some number of months to get your shit13:39
fennis that still true?13:39
caternfenn: it says on their website 10-12 weeks13:39
caternbut I don't mind waiting13:39
fennwell that's dumb13:39
fenn12 weeks to get some oatmeal powder?13:39
fennit's not magic13:41
fennin fact the whole thing is pointless now that it's not open source13:41
fenngo buy some "ensure"13:41
fennor "boost"13:41
kanzure"open source"13:41
kanzure"the whole thing is useless now that it's not using a bitcoin blockchain, man"13:41
fenn"open source" means anyone can replicate it with the information provided13:41
fennthat's not too much to ask for13:42
fennit also means you know what the fuck you're eating every day13:42
fenni thought that was mandatory13:42
fenngod dammit13:43
kanzurewas soylent predicated around that13:43
fennyes13:43
kanzurewell, sorry, people suck13:43
kanzuredon't design systems around relying on them13:44
fennthen some VC money got involved and it became "a startup" and everything went downhill from there as far as i can see13:44
kanzureor, maybe it was already going downhill before that13:44
fennlook, i set a pretty low bar for radical self experiments, but not knowing what you're eating is not good enough13:45
kanzurei suspect that most people go around in life not knowing anything at all in a general haze, so the person who did solynet probably thought it was a normal state of affairs and shrugged it off13:45
fennno that's completely wrong. go back and look at the original blog post13:45
fennfuck i hate the new archive.org wayback machine13:46
kanzurei never use the landing page, just type http://web.archive.org/web/*/address/*13:46
kanzureso he wrote an okay post just once, and then wasn't able to maintain conceptual integrity13:47
kanzurekinda boring story13:47
fennthat just gets me to the calendar view13:47
fennit used to show you when the site changed with an asterisk next to the date, and it would just show a list of dates13:48
fennnow you have to go hunting through a bunch of blank space with calendar entries for each year13:48
fenntrying to find the bolded numbers13:48
fennyou couldn't design a worse interface without flash13:49
fennyou can't change years without javascript13:49
kanzurefor the list of files on a single page i usually just wget that page13:50
kanzurebecause it's often 20,000 entries and only 50 shown per "page" (but it's all on the same page)13:50
kanzureso by examining the file directly i can save on memory13:50
kanzureplus not have to use a hypershit ui13:50
kanzureso it's win-win13:50
fennThe Quantified Diet13:51
fennIt's wonderful to have full visibility and control over what's going in to my body. Besides making food allergies irrelevant, it's trivial to increase or reduce consumption of a particular substance by a precise amount.13:51
kanzureso you're trying to prove to me that there is hope for reform from his side?13:52
fennfollow up post, "what's in soylent"13:52
@ParahSailinrhinoceros pubic hair13:53
fennthen he lists sort of an amateur overview of nutritional requirements13:53
@ParahSailinvery good for horn!13:53
fennParahSailin: it was just maltodextrin, whey, salt, vitamin pills, and olive oil (pretty much)13:55
@ParahSailinthe magic is in the trace ingredients from endangered animals13:59
fenngo away ParahSailin14:00
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kanzuredon't make our black arts bio person leave14:00
kanzurehe's like the only redeeming person we have around here14:01
fennok here's an ingredient list http://cdn.shopify.com/s/files/1/0421/5993/files/Complete-Soylent-Nutrition-Facts.jpg?2754814:01
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fennsaved by the USDA (why isn't this the FDA's job again?)14:02
@ParahSailinew canola?14:02
fennwow 1 pound of dry powder per day, plus 60ml oil? that's more mass than i expected14:04
fenni think i'd skip the "oil blend"14:05
fennthe fish oil would just make everything reek14:06
fennand the canola is stupid14:06
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jrayhawk"Vitamin A (as palmitate)" what14:19
jrayhawki guess he meant retinol palmitate14:20
fennwtf why is there no entry for "blackstrap molasses" in the USDA database14:22
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jrayhawkugh, folic acid14:25
kanzure"obscure nutritional requirements of human body" probably belongs on the wiki14:25
jrayhawkalso ugh, grain protein14:25
fennjrayhawk: opinions on pea protein?14:26
jrayhawki haven't heard of anyone reacting to it, so it is at least probably not actively bad14:26
jrayhawkI assume it's pretty low in BCAAs, though14:26
jrayhawkoh, "rich in BCAAs"14:27
jrayhawkhuh14:27
fennpeas have the following amino acid breakdown: leucine 7.2% isoleucine 4.0% valine 4.6%14:30
jrayhawkhttp://www.swansonvitamins.com/now-foods-pea-protein-powder-2-lbs-pwdr has a specific and complete list14:30
fennoh cool thanks14:31
fennthat is different from the USDA entry for peas14:33
jrayhawkwell, it is an isolate14:33
jrayhawk"yellow peas" it says14:34
fennhm ok14:35
fennit doesn't match garbanzo beans either14:36
fennso it must be some specific protein they're capturing14:36
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fennah it matches "pink lentils"14:37
fennso, you'd expect "soylent" to use soy and lentil as the protein source14:39
fennwtf is this shit http://nutritiondata.self.com/facts/sweets/5574/114:43
fenni know for a fact there is a thing called "blackstrap molasses" and it is very different from regular molasses14:44
fennhttp://www.brerrabbit.com/wp-content/uploads/2012/12/BRBlackstrap-nutrition.jpg vs http://www.brerrabbit.com/wp-content/uploads/2012/12/BRMild.jpg14:50
fennargh where's my fucking portable mass spectrometer14:53
kanzurewell, where's the last place you put it?14:55
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delinquentmeDangit .. whats the 4chan spelling of illuminati?15:13
delinquentmeilermernate?15:13
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FourFireblackstrap is recooked sugar cane juice15:39
FourFirelike, secondary proccessed by product15:40
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fenndelinquentme: what was the other handheld sensor you mentioned? not SCiO but possibly some other near ir spectrometer?15:57
delinquentmetellspec15:57
delinquentmethats the one that failed . scio apparently has been checked out by vcfirms *(FWIW)15:58
fenn"failed" how?16:00
fennaside from being ugly16:01
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fenndelinquentme?16:05
delinquentmeIDk specifics16:05
delinquentmejust know that the details are online.16:05
fenn.title http://www.ahurascientific.com/material-verification/products/truscan/index.php16:07
yoleauxRugged Hand Held Raman Spectrometer for Material Testing16:07
nmz787_i1NIR spec is boring16:08
nmz787_i1its so lame they switched from Raman16:08
nmz787_i1guess their 20/30 year spectroscopy expert wasn't up to the challenge16:08
nmz787_i1even ben krasnow did raman with an SLR DIY style16:08
kanzurehah16:08
kanzureoh yeah, i guess spectroscopy stuff is technically supposed to be easier than plugging in 40 DSPs in parallel16:10
fennnmz787_i1: raman is just a laser, a beam splitter, a filter, and a grating?16:11
fenn300 mW or lower, why is that "handheld" thing so huge16:14
@ParahSailinpaperbot: http://iopscience.iop.org/0004-637X/764/2/167/article16:16
paperbothttp://libgen.org/scimag/get.php?doi=10.1088%2F0004-637X%2F764%2F2%2F16716:16
fennwoah it has a big collector mirror on the front16:18
gradstudentbotThere's no way to know for sure.16:20
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fennnmz787_i1: cool beans, i watched ben krasnow's video16:32
fenni wonder why he used a HeNe laser and notch filter instead of just an IR laser and IR filter16:32
fennthat really ought to be a text post with photos, not a video16:33
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fenn"TellSpec started off with laser-based Raman spectroscopy (it’s described in its Indiegogo campaign), and switched to a DLP-based sensor when it partnered with Texas Instruments in March."16:39
kanzureso... sellouts? or cool excuse to use DLP.16:39
fennDLP what? what?16:39
kanzurefrom the quote?16:39
fennwhy can't we just call things what they are16:40
fennnot ranting at you, just sick of these fucking popular science articles that assume we are too stupid to know the difference between NIR and raman spectroscopy16:40
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fenn hyperspectral imaging or chemical imaging, in which thousands of Raman spectra are acquired from all over the field of view. The data can then be used to generate images showing the location and amount of different components. Taking the cell culture example, a hyperspectral image could show the distribution of cholesterol, as well as proteins, nucleic acids, and fatty acids.16:54
fennRaman is not the same as hyperspectral, but still, i want to shoot lasers from my eyes16:54
kanzureit penetrates cell wall?16:56
kanzureor, erm16:56
kanzurei have not seen that sort of cellular protein imaging before16:56
kanzuremostly just "mix it in something that spins, then take the compound and blast photons at it"16:57
fennthere's not any chemical applied, it's just shooting a laser at the cell and watching the light coming off it16:59
fennyou have to scan the image with a slit/grating to get a hyperspectral image17:00
kanzure.g hyperspectral image17:00
yoleauxhttp://en.wikipedia.org/wiki/Hyperspectral_imaging17:00
fenn"just" a spectral image is pretty cool tho17:00
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fenn"If the scanner detects a large number of fairly narrow frequency bands, it is possible to identify objects even if they are only captured in a handful of pixels."17:02
fenn Newer full motion video spectral imaging systems can simultaneously captures and processes all three dimensions of a spectral cube at video rates.17:04
fennimagine looking around and even ordinary rocks look special http://en.wikipedia.org/wiki/File:HSI_LWIR_stones.png17:09
kanzurebut they do look special, thanks to the power of stimulants and hallucinogens17:09
nmz787_ifenn: notch filter or dropoff (or cliff, I think) filter is needed... basically the cutoff needs to be super steep or you'll have less usable data17:10
fennso? i mean, data is better than no data17:10
fennless data is better than no data17:10
nmz787_imaybe, but I think the usable data drops off significantly the further from the laser wavelength you are17:10
fennalso i think you can use multiple lasers and filters (red laser/red filter and ir laser/ir filter) to reconstruct the wavenumber spectrum17:11
nmz787_isince most raman interaction is quite weak, its not likely to shift the laser wavelength too much17:11
nmz787_iyou can use any laser for input, I believe, but samples don't always respond the same to diff inputs17:11
nmz787_iand there are things like autofluorescense to deal with17:12
fenni know all this17:12
nmz787_ikanzure: yes photons can make it past the cell... close your eyes and blink a flashlight in front of your face ;)17:12
kanzurei corrected myself17:13
nmz787_ikanzure: realizing what layer they interact with is a diff issue17:13
kanzurewell we have lots of diff algorithms17:13
fennwhat layer?17:13
fennour eyes are made of cells17:14
fennnow i'm confused17:14
nmz787_ione way to get around/figure that out is SORS (spatially offset raman spectroscopy)17:15
nmz787_iwhich is like playing pool (billiards) with photons17:15
fennplease don't make analogies like that17:16
nmz787_iyou input at an angle, and watch at the recipcrocal (the same angle relative to perpendicular)17:16
nmz787_i(reciprocal might be the wrong word)17:16
fennso the idea is that only raman photons will be emitted from that angle?17:16
nmz787_ino, you'll get laser too17:16
nmz787_ibut the idea is you control at what depth bounced photons came from17:17
nmz787_ihttps://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&cad=rja&uact=8&ved=0CCkQFjAA&url=http%3A%2F%2Fwww.stfc.ac.uk%2Fclf%2Fresources%2FPDF%2Far06-07_s5_noninvasvedetection.pdf&ei=lV9pU_GvCYHpoATZxIGoAQ&usg=AFQjCNElkbyhR72QifBMBvRsDjBxFUH6WQ&sig2=-VmOf8WOjshNqEfghwZUUg&bvm=bv.66111022,d.cGU17:18
nmz787_ihttp://www.stfc.ac.uk/clf/resources/PDF/ar06-07_s5_noninvasvedetection.pdf17:18
nmz787_isorry, copy paste crap removal not turned on here17:18
nmz787_ioh17:18
nmz787_ithat paper sucks17:18
nmz787_ihold on17:19
fenni am reading https://en.wikipedia.org/wiki/Spatially_Offset_Raman_Spectroscopy17:19
nmz787_ii just sent this out a few days ago17:19
fennoh so you just use the reflected light from beneath the packaging surface17:20
fenngiven a 2d spectrum of depth and IR emission, use some other value of depth17:20
nmz787_ihttp://pubs.acs.org/doi/pdf/10.1021/ac062223z17:21
kanzure.title17:21
yoleauxAn Error Occurred Setting Your User Cookie17:21
kanzurenice17:21
fennshouldn't paperbot get that17:21
nmz787_ii believe that paper is open17:21
kanzurepaperbot: http://pubs.acs.org/doi/pdf/10.1021/ac062223z17:21
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/1d602c89e3d710a5250cabd853dcdc29.pdf17:21
kanzure"open" or not, i don't trust publishers anymore. i just want the exact link to a working pdf, with nothing in between.17:22
nmz787_iso wxPython really sucks in terms of the pre-packaged widgets they offer17:23
fennwhat are you using wxpython for?17:24
nmz787_iHTML/CSS/JS would be a lot faster to get functional things, though that cefpython lib was a bit too RAM heavy compared to wxpython (80MB vs like 28MB)17:24
fennbecause chrome is a ram hog17:25
fenni dont get why anyone would tether themselves to a specific rendering engine17:25
kanzurepyjamas-desktop can do mshtml/trident instead of webkit/blink17:25
fennhuh pyjamas isn't in ubuntu?17:26
kanzurekinda sorted abandoned/forgotten17:26
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fennonly 2 years ago17:27
kanzurethe tides were turning earlier17:27
kanzurewith the olpc stuff and sugar something17:27
fenni dont know what that means17:27
fenngtk now uses CSS so i guess it's using something like an html renderer17:28
kanzureone of the main reasons pyjamas was getting any attention was one laptop per child17:28
fennThere are now 2 forks of the Pyjamas Project. One maintained by the new pyjs team at pyjs.org And another maintained by Luke Leighton at pyj.be17:30
kanzuregood ol' lkcl17:30
kanzureengland's phantom steam engine17:30
fennwell anyway i think there's a difference between a GUI framework that renders to html/css/js and a general purpose python-to-js translator17:31
eudoxiaso what happened to the css on diyhpl.us17:31
kanzurefuck css17:31
kanzureis what happened17:31
eudoxia:/17:32
nmz787_ii tried using the pyjs.pyjamas but it was not very easy to get up and running out of the box17:32
kanzurewhy's that bad?17:32
kanzurefenn: there's also widget stuff though, see pyjamas-desktop (which is a bit different from pyjamas)17:32
eudoxiai just think it could look, you know, better17:32
kanzurec2.com still looks old school and fine17:32
nmz787_ibut wxpython listctrl (a list of things) doesn't allow simple things like disabling a row... or in 'REPORT' mode, i.e. rows with columns... you can't address individual cells easily... or add arbitrary other widgets like buttons to a cell17:33
fennwxpython was always terrible because wxwidgets was always terrible17:34
fennthe only thing it has going for it is "it also runs on windows!"17:35
kanzurewell it's not like anyone should use qt17:35
fennif interoperability is your goal then a web interface should be your priority17:35
nmz787_iget shit done is my (our) goal17:35
fennthen use a CLI17:36
nmz787_ithat is not helpful in this case17:36
fennthen use a framebuffer :P17:36
kanzureget shit done only produces shit17:37
fennbut worse is better17:37
nmz787_ii'll prob end up extending their wxGrid widget, which is basically an excel-like table with cells17:37
kanzure"worse is better" is the reason why fenn is going to die young17:37
fennit's true17:37
nmz787_i'shit' here is a loose term, so 'shit' produced is fine17:37
nmz787_i"that's some gooood shit!"17:37
fennthat mindset is shit17:37
kanzurei doubt he has been exposed to the reasons why "worse is better" is worse17:38
fennError: double negative value limit exceeded17:38
kanzurei'm suggesting "worse is better" may be all he is aware of17:39
kanzureit's not like lots of people are arguing the opposite these days17:39
* fenn hides under his lisp blankie 17:39
fennmake it go away!17:39
kanzure.g site:c2.com worse is better17:40
yoleauxhttp://c2.com/cgi/wiki?WorseIsBetter17:40
nmz787_inah i just didn't have time to test qt too, and decided performance (RAM and load time) gains were better than bloated chrome17:40
kanzurefirst half of this page is crap17:40
fennokay "YAGNI" is not "worse is better"17:41
kanzuresecond half too17:41
eudoxia"just live with shit because the alternative is building a Connection Machine and having no friends"17:41
kanzurehttp://en.wikipedia.org/wiki/Worse_is_better17:41
kanzure"Gabriel later answered his earlier essay with one titled Worse Is Better Is Worse[3] under the pseudonym "Nickieben Bourbaki" (an allusion to Nicolas Bourbaki)."17:42
fenngo out for pizza or eat your sprouts alone17:42
kanzurehttp://dreamsongs.com/Files/worse-is-worse.pdf17:42
fenni actually forgot the phrase originally came from the lisp/c fight17:43
kanzuresorta fitting, right?17:43
nmz787_ii guess worse is better in the sense of " Software that is limited, but simple to use" is true here17:43
nmz787_iexcept that the non-limited software also exists17:43
nmz787_iso it isn't really worse, its just another option if you're a dumber user... or if your job isn't being a wizard with that tool17:44
fenn"it's better to be simple than correct" is where the "worse" comes in17:45
fennsoftware should reject cases it is known not to work well on17:45
kanzurei often hear "worse is better" as an economic argument to justify writing piles of shit17:46
fennyeah i tend to think of it as the ruby hacker mentality17:46
fennor an explanation why people still use PHP17:46
fennanyone still using C knows why they need it17:47
fenn" it complains about the lack of a journaling file system, and states that a graphical user interface would be an oxymoron for Unix, but these features are now standard. A large proportion of the complaints are about anomalies in the command line interface. It predates the rise of Linux, and thus concerns the several commercial versions of Unix then available"17:48
kanzure"anomalies in the command line interface"17:49
fennsomething about how man pages are weird17:49
fenn"INFO OR DIE TRYING"17:50
fennthis is why there are still no man pages for some GNU tools? seriously?17:50
eudoxiai wonder why docs are split into man pages and that info thing i never use17:50
kanzure"The dichotomy that might exist is that of right-thing design17:51
kanzureversus no design. This is very different."17:51
fenni like how "help" the bash builtin is totally useless for a newbie17:51
fenn"here are some advanced commands you will never use and their flags"17:51
kanzure"Lisp is used by weirdos who do weird science."17:53
fenn cd [-L|[-P [-e]]] [dir]17:53
fennand no further explanation17:53
eudoxiawell at least i do "science"17:53
kanzure"These arguments put the entire argument of worse is better into shadowy light. But the real quarrel with the paper I have is about what it teaches people. The paper states that a good strategy to adopt when trying to make things better is this: '... it is undesirable to go for the right thing first; better to get half of the right thing available so it spreads like a virus. once people are hooked, take the time to improve it to 90% of the ...17:55
kanzure... right thing.' This adice is corrosive. It warps the minds of youth. It is never a good idea to intentionally aim for anything less than the best, though one might have to compromise in order to succeed."17:55
kanzure(and then the paper ends prematurely)17:55
fenn"release early, release often" is good and all, but far too often we never get to a finished product17:55
fennhow is that prematurely?17:56
kanzurerewrites in the future are extremely costly17:56
kanzurewell, because it doesn't elaborate on anything17:56
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kanzureand ostensibly, those comments are the point of the paper17:56
kanzureso why would it just end right there17:57
fennbecause he was done?17:57
kanzurei don't think that's enough to convince anyone17:58
* fenn wonders if Hurd boots yet17:58
kanzure"It is never a good idea [because I say so]"17:58
eudoxiai like that hurd is a server based thingee17:59
eudoxiait's nice for some reason17:59
kanzurewhereas other non-programmer types can say, "Well, if we didn't release a pile of crap, we would have never made any money. Therefore, making terrible things is morally justifiable."17:59
fennno comment18:00
kanzuream i getting it wrong?18:00
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fennthat's the "worse is better" argument in a nutshell18:00
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kanzurethe problem with that argument is that it's extremely simple to formulate on your own18:01
kanzureso i think lots of people spontaneously think it up18:01
kanzureas a form of intuition or something18:01
fennit's also lazy, unethical, and shits on your users18:01
fennand generally makes the world a worse place18:01
fennunfortunately this doesn't make it false18:02
kanzurewell, the "we'll fix it later" thing is demonstrably false18:02
fenninteresting, gnu uses ikiwiki for their project pages18:03
nmz787_is/morally/economically/ I think you mean kanzure18:05
kanzurehah i wish18:06
fennthe argument isn't usually about what is economically justifiable though18:06
fenni mean, being a pirate and murdering children is economically justifiable18:06
kanzurethere's good money in piracy18:07
fennand ponzi schemes, and planned obsolescence, and putting melamine in your dog food18:07
fennHost blubber.bddebian.com blubber18:08
fennblubber clubber flubber gnubber goober grubber snubber18:09
kanzurealternate universe seven dwarves?18:09
fennyou will be expected to remember which host you are assigned. good luck!18:09
fennso, "Hurd is a multiserver microkernel" and i guess this means something18:10
fennMach is particularly well suited for SMP and network cluster techniques. Thread support is provided at the kernel level, and the kernel itself takes advantage of that. Network transparency at the IPC level makes resources of the system available across machine boundaries18:11
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fennhm. "We couldn't find any repositories matching 'lkcl'"18:29
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fennhttp://repos.io/user/github/lkcl/ https://github.com/lkcl/ something doesn't sit right18:35
fennhis last repo was 2011?18:36
fenni guess he has a real job, but it's weird to just delete your github account but leave the link prominently on your homepage18:41
kanzurehe's had "real jobs" for quite a while now18:45
FourFirekanzure, as opposed to?18:48
kanzurehe said it first18:49
kanzureask him18:49
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@heathanyone making money from alt currencies yet?18:56
@heathmaking decent* money18:56
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kanzuresorta18:56
fennFourFire: he's "Head of IT at Greater China of London" which implies a lot of guys in suits breathing down your neck 24/719:00
FourFireat least he doesn't need to exercise "synergy"19:01
fennsyzygy is the new xyzzy19:04
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kanzureheath: i wrote some software to mine in the first 2-5 minutes of each one's existence19:05
kanzureheath: by git cloning, running a build, and deploying to ec2 instances19:06
@heathi don't understand how you would have discovered a new currency within the first 2 minutes of its public existence :)19:09
@heathand wired your system to mine within those first two minutes19:09
@heaths/two/five19:09
@heathbut that's a pretty sweet idea19:10
kanzurebecause i just have something monitoring bitcointalk.org19:10
kanzurethey are all the same software, with very minor alterations19:10
kanzurebuild it once, and dump in the modified files, and you can build the new thing much faster19:11
kanzureit's all just a fork of bitcoin.git or litecoin.git etc19:11
kanzureit's really quite boring19:11
eudoxiathat's just classic kanzure19:12
kanzurethe problem is that the costs on ec2 are still going up because everyone points their miners at the new altcoins19:13
kanzureso it's not as cheap as it once was19:13
kanzure the more miners show up within the first few minutes, the more competing alternate blockchains exist for that currency19:13
kanzureplus, the more quickly the difficulty shoots up19:14
kanzurebut at the same time, i can't exactly show up and crush the blockchain too quickly, because if i end up with 95% of the coins, then nobody is around to be using it19:14
kanzureit is a weird balance19:14
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fennwhy alternate blockchain? just run the existing blockchain19:29
fenni mean there's no reason to make a new blockchain except to try to double spend19:29
eudoxiai think he means the forks that happen19:30
kanzurewhen you have a bunch of miners trying to mine the same new altcoin, they don't all have the same blockchain19:31
kanzureso if some of the nodes create a cluster amongst each other, they might think they have the correct chain of blocks19:31
kanzurewhen in fact they do not19:31
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fennbecause they aren't communicating with other nodes? shouldn't that get resolved eventually? (i guess it gets resolved by killing that chain)19:32
kanzureyes, eventually.. but during the first few minutes of existence, stuff like that is probelmatic and misleading to users.19:32
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kanzure*problematic19:32
fennbig bang theory stuff19:33
fennyo dawg check out my superluminal miner19:33
kanzuredid i miss something19:34
fennno19:35
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fennoh. a raman shift is just a redshift or a blueshift due to the vibration of the atom19:38
fennwhy the hell didn't they just say that19:38
delinquentme^ knowledge isn't evenly distributed19:45
eudoxiaaliases are useful19:45
eudoxialike when you're talking to someone about something and they tell you what it's called and you're like "oh that's the term"19:46
kanzuredelinquentme: no, it's just people fucking with other people, and not getting called out on it19:46
eudoxia"cool now i can type less"19:46
fennok but this is just too much: The Raman effect occurs when light impinges on a molecule and interacts with the electron cloud and the bonds of that molecule. For the spontaneous Raman effect, which is a form of light scattering, a photon excites the molecule from the ground state to a virtual energy state. When the molecule relaxes it emits a photon and it returns to a different rotational or19:47
fennvibrational state.19:47
fennhe difference in energy between the original state and this new state leads to a shift in the emitted photon's frequency away from the excitation wavelength. The Raman effect, which is a light scattering phenomenon, should not be confused with absorption (as with fluorescence) where the molecule is excited to a discrete (not virtual) energy level.19:48
fennmaybe i am dumb but that is just hard to understand19:49
fenn"virtual energy state"??19:49
fennthis is why we should never use "light is a particle"19:52
fennthen people say things like "inelastic scattering"19:52
nsh_heh, just came up from a google search: http://diyhpl.us/~bryan/papers2/security/Towards%20Provably%20Secure%20Software%20Attestation.pdf19:54
nsh_via: http://scholar.google.co.uk/scholar?client=ubuntu-browser&espv=2&es_sm=94&um=1&ie=UTF-8&lr=&cites=1016137533683560857719:54
fenn.title http://spie.org/x34680.xml19:57
yoleauxMini-handheld Raman TRicorder-0TM at DSS: SPIE19:57
fennit still seems really big and heavy to me19:57
fenn110x190x54mm3, weighing a "mere" 2 lbs19:58
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fenni think i'd want something that acted as a usb camera, probably in a "usb key" form factor so you can attach it to a phone with a OTG cable20:18
fenni guess phones don't normally have usb host turned on? this makes me sad20:19
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kanzuremetalbeard isn't going to be happy when he hears about this20:40
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@ParahSailini just learned that i work for the people who make these https://us.vwr.com/store/catalog/product.jsp?catalog_number=80081-19420:44
kanzurehttp://img1.wikia.nocookie.net/__cb20131229133636/lego/images/thumb/2/21/70807-metalbeard-2.jpg/1000px-70807-metalbeard-2.jpg20:44
kanzureParahSailin: nice market focus20:44
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@ParahSailinits quite the revenue stream20:46
kanzurewhy?20:46
fennMetalBeard and his pirate crew infiltrated the Octan Tower. His fellow crew members were taken prisoner for the Think Tank, but MetalBeard managed to survive and retreat, though at the cost of being "bricked" by Lord Business, despite coming up "with every conceivable plan imaginable". He soon leaves upon hearing the construction worker has no creative skill, saying he's "leaving on a lost cause."20:46
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@ParahSailinbecause every lab ive been in has these things20:46
fennParahSailin: are those just straws cut at an angle?20:48
jrayhawkhttp://rayhawk.livejournal.com/439433.html20:48
@ParahSailinfenn: no, its alien technology20:48
kanzure.title20:48
yoleauxrayhawk: The LEGO Movie20:48
kanzureoh is mike responsible?20:49
kanzurei should have expected a rayhawk conspiracy20:49
jrayhawkin some ways20:49
jrayhawkthere are a lot of subtle references in place20:49
kanzure"But looking again, the really suspicious similarity is between the Von Bragstein Boiler-Mech and Metalbeard. That one's tougher to handwave away, but even there I can't really know whether it's meant as an homage or what."20:51
kanzurehttp://pics.livejournal.com/rayhawk/pic/000yfz6k/s640x480.jpg20:51
fennhey big daddy20:52
fennwaargh20:52
fennomg don't google that20:53
gradstudentbotSo, there's this really good conference in Spain that I want to attend.20:54
fenni meant http://warhammer40k.wikia.com/wiki/WAAAGH!20:55
fenn"a WAAAGH! is a cross between a holy crusade and a pub crawl, with a bit of genocide thrown in for good measure."20:58
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kanzure"This page needs content. You can help by adding a sentence or a photo"21:04
kanzurewhoops21:05
kanzuremetalbeard is a pretty good name21:05
kanzureeven better than cyberbeard21:05
fennmetalbeard prime21:05
kanzuredread pirate metalbeard21:06
kanzuremetalbeard.org is available21:07
jrayhawkMike unwittingly concepted LEGO Universe, and the LEGO Movie poached a lot of folks from Universe when it shut down21:07
fennthat brikwars painting reminds me of http://onastick.net/sitz/images/21:07
fennand various other 40k crap21:08
jrayhawkhttp://mikerayhawk.com/lu_inspiration.htm21:08
gradstudentbotI don't know whether I am Turing dreaming that I am a machine, or a machine dreaming that I am Turing!21:10
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fennhttp://media.desura.com/cache/images/groups/1/1/84/thumb_940x3000/1187025029_Suffer_Not_the_Furry_to_Live_Desu.jpg21:18
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kanzureisn't that supposed to be fury21:21
jrayhawksuffer not nick fury to live21:22
fennwhat happened to the lego universe code?21:27
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kanzuregot lost in an ironic cargo container when shipped to the united states21:37
fennpecked to death by the giant rubber ducky?21:37
kanzurecorporate giant rubber ducky21:37
fenni mean, blender is pretty good, and basically the same thing happened right?21:38
fennthere's gotta be so much dead code lying around21:38
gradstudentbotWell, it looks better if you see it through a UV scope.21:38
fenni still don't get that UV scope comment21:39
kanzureas opposed to not shooting ultraviolet at it21:39
kanzurehttp://www.microscopyu.com/articles/fluorescence/filtercubes/ultraviolet/uv2a/images/uv2aspecimensfigure2.jpg21:42
kanzurehttp://www.rsc.org/ej/PP/2008/b808776h/b808776h-f1.gif21:42
fennwell it looks better if you have hyperspectral vision21:42
jrayhawk\21:42
jrayhawkfffff21:42
kanzure.title http://pubs.rsc.org/en/content/articlelanding/2008/pp/b808776h21:43
yoleauxIn vivo nonlinear spectral imaging microscopy of visible and ultraviolet irradiated hairless mouse skin tissues21:43
fenn"purple" is not a scientific word21:43
kanzurepurplexing21:43
kanzureah shit21:43
fennso, optical coherence tomography is pretty sweet21:44
fenncould you made a 3d model of someone's brain in IR?21:44
fennat least the outer layers21:45
fennhm only 1-2mm21:46
fennseems like that would be wavelength-dependent21:47
fennResearchers have used OCT to produce detailed images of mice brains, through a "window" made of zirconia that has been modified to be transparent and implanted in the skull.21:50
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kanzurei should get a window.21:50
fennpaperbot: http://www.nanomedjournal.com/article/S1549-9634(13)00361-4/abstract21:50
fenn.title21:50
yoleauxElsevier21:50
paperbotTypeError: unicode() argument 2 must be string, not None (file "/usr/local/lib/python2.7/dist-packages/requests/models.py", line 825, in text)21:50
fennbah21:51
kanzurehahah21:51
kanzureso much fail21:51
fennTo use this website, your browser must accept cookies.21:51
fennwhen did cookies become such a big deal21:51
fennevery fucking website feels the need to tell me about its cookies now21:51
kanzurewhen the uk made a law about this21:52
kanzurensh_: i blame you21:52
fenncan't they look at my IP21:52
nmz787_iI feel like there's some rap song about a girl's 'cookies'21:52
fenn"graphical abstract" http://download.journals.elsevierhealth.com/images/journalimages/1549-9634/PIIS1549963413003614.fx1.lrg.jpg21:53
fenni like the concept of a graphical abstract21:53
fennif every paper were required to have a graphical abstract, every lab would have a resident graphic artist, and everyone would be better off21:54
kanzurejust hire mike21:55
kanzureplus it will end up looking like lego so everyone wins21:55
fennsure but 90% of science papers have awful diagrams21:55
fennand there's a general lack of scientifically accurate art21:56
kanzurehm i see what you mean https://www.google.com/search?safe=off&site=&tbm=isch&source=hp&biw=1920&bih=943&q=scienc21:59
gradstudentbotSigh, my invasive fruit flies won’t have sex for me.21:59
nmz787_iLOL21:59
kanzurehttp://fc07.deviantart.net/fs70/f/2013/072/6/4/i_love_science_poster_by_paulsizer-d5xweux.jpg22:00
kanzurewhy is he red?22:01
fennwell at least an anatomically accurate DNA molecule got on the first page22:01
fennthere's so many shit DNA images out there22:01
kanzureand what the hell fetish is this (nsfw) https://62e528761d0685343e1c-f3d1b99a743ffa4142d9d7f1978d9686.ssl.cf2.rackcdn.com/files/764/width668/aapone-20090623000188779203-britain-ent-art-science-von_hagens-bodyworld-original.jpg22:01
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kanzurethis one is an image of some guy next to a racist robot http://wearscience.com/img300/robot.png22:02
fenn"why is he red" it's a communist propaganda thing22:03
kanzureand i hate all this crap http://3.bp.blogspot.com/-HujPLsymse8/UCZpOEKKzdI/AAAAAAAAAnQ/Q5F6K4RPCtA/s1600/Scientists+Prove+DNA+Can+Be+Reprogrammed+by+Words+and+Frequencies.jpg22:03
fennit's not a robot it's a waldo22:04
kanzurethe problem is there's so much of it http://d1jqu7g1y74ds1.cloudfront.net/wp-content/uploads/2008/05/consciousness.jpg http://huuhaablog.files.wordpress.com/2012/07/cosmic-consciousness.jpg http://imagizer.imageshack.us/a/img801/6778/o1kd.png http://www.learning-mind.com/wp-content/uploads/2013/07/pineal-gland-third-eye.jpg http://goldenalmachcreation.com/wp-content/uploads/2013/05/Planetary-peace-cosmic-consciousness-spiritual-science.jpg22:06
kanzurewhy do people keep coming up with this crap22:06
fennwhat dna looks like on tv: http://watchdog.wpengine.netdna-cdn.com/wp-content/blogs.dir/1/files/2013/11/shutterstock_61775431.jpg22:06
kanzurewhat it really looks like: http://rsbweb.nih.gov/ij/docs/examples/dna-contours/original.jpg22:07
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fenni was trying to find something like this but with all the molecules filled out https://chemistry.osu.edu/~herbert/images/DNA_orbs.gif22:09
nmz787_ifenn can't you just use pymol?22:10
kanzurewell, you can find the ribbon models22:10
fennargh chrome you pig22:10
kanzurehow about this one22:10
kanzurehttp://www.uam.es/gruposinv/cmpts03/images/web/siesta.jpg22:10
kanzurei forget the name of this visualization technique22:11
kanzurebut it was mentioned in the logs about 3 years ago22:11
nmz787_ispace-fill or electron-cloud or something?22:11
kanzureelectronic potenital map22:11
kanzureelectronic potential map22:11
fennHOMO LUMO something something22:12
kanzurehttp://www.chem.umn.edu/netstep/2001/january/10york.jpg22:12
fennyeah, that looks about right22:14
fenni don't get why they always render isosurfaces instead of translucent voxels22:14
nmz787_ithat seems interesting22:15
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kanzurefenn: like this? http://www.opendx.org/inaction/chemistry/images/original/sv5.jpg22:18
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kanzurebut yes i think pymol does this type of visualization22:19
kanzureand presumably it's using opengl22:19
kanzurethereofre translucency should be not impossibly hard22:19
fenni am attempting to use google image search in chrome with slow results22:20
fennhttps://engineering.purdue.edu/gekcogrp/software-projects/nanoHUB/nanowire.php22:20
fennanimated gifs of translucent isosurfaces "Full 3D Volume Rendering of Electrostatic Potentials and Electron Densities"22:21
fenneven that still shows the isosurfaces... in reality there are no surfaces22:22
fennin reality there are no surfaces22:22
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fennCalled EVolVis, for electronic volume visualizer, the software lets scientists see atomic and molecular structures and interactions in a way never before possible by computing and visualizing the mathematical properties of the electrical charge distributions of the structures. The software relies on volume-based rather than surface rendering techniques, which means that users can probe entire22:26
fennmolecules without obstruction by opaque surfaces and without having to preselect specific views or layers. The information attained from such a holistic perspective provides critical clues into molecular behavior, including why molecules take their distinctive shapes, how they orient themselves for chemical reactions, and even where new atoms may bind if a molecule is bent out of shape.22:26
kanzure"never before possible" fucking liars22:26
fennhttp://www.cgw.com/images/Media/PublicationsArticle/ch3f.jpg22:26
fennfrom http://www.cgw.com/Publications/CGW/2001/Volume-24-Issue-3-March-2001-/Atomic-Vision.aspx22:27
fenn.tell xentrac http://www.cgw.com/images/Media/PublicationsArticle/ch3f.jpg22:27
yoleauxfenn: I'll pass your message to xentrac.22:27
kanzurethose seems to be the only few images available22:27
fennA computer-generated image of methyl fluoride. The upper object (with the "halo") is a fluorine atom, which has nine electrons "orbiting" its nucleus when it is an isolated atom. When fluorine is bonded in a molecule, as it is here, the electron count varies. Unenlightened chemists argue quite a bit over how to count them.22:28
fennkanzure: it may have never been possible before 200122:29
fennat least not in real time22:29
kanzurei don't like how different fields of study remain hopelessly disconnected22:29
fenni don't like how we are told lies repeatedly by supposed teachers22:30
kanzurehave you tried murdering them?22:30
fennno22:31
nmz787_iwhat?!22:32
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fenni was talking about the S orbital and the P orbital and the "hybrid orbital" and so on22:34
fennwhen really it looks like some glowing alien squid angel22:34
nmz787_ihttp://people.nas.nasa.gov/~chenze/preston/22:35
nmz787_i3 mpgs22:35
fenn6MB cyanocobalamin http://www.mtsu.edu/honors/images/B12.mpg22:35
nmz787_ihttp://people.nas.nasa.gov/~chenze/home.html22:36
nmz787_ihuh22:36
nmz787_iempty22:36
gradstudentbotYeah, but his PI wrote his dissertation.22:36
nmz787_ihttp://www.mtsu.edu/honors/staff/macdougall.php22:36
fenni don't really get the green flash stuff22:37
nmz787_iin b12.mpg?22:38
fennuh, hold on22:38
fennno, in pen1.mpg and pen2.mpg22:39
nmz787_ii have the wikipedia structure open while looping the mpg22:39
nmz787_ihmm22:40
fennhuh it's actually red22:40
fenni thought they just colored the vitamin pills red to go with the cherry flavor22:40
nmz787_ihuh, that R group is literally an electronic 'stub'22:42
nmz787_iR = isNotImplemented22:42
fennhttp://www.nas.nasa.gov/hecc/assets/images/content/Chaderjian_RotorcraftWakes_large.jpg22:42
fenntopological knots22:43
fenni mean, vortex knots22:43
fennugh i hate university biography pages22:48
fennpaperbot: http://search.proquest.com/docview/27609628122:49
kanzure"Dr. Mumbleson has participated in 8,347 papers across 20,000 conferences that you've never heard of. He is currently unavailable because he is in space."22:49
fennso there is no "EVolVis" anywhere that i can see22:53
nmz787_inope22:53
nmz787_inas.nasa doesn't list anything about molecules or atoms22:53
fennhow does something like that just up and disappear22:54
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kanzuresame way the lab server disappeared22:54
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gradstudentbotIt's contaminated.22:55
nmz787_ior it changed names without attribution22:55
fennWritten in C++ using OpenGL and XWindows, EVolVis can use either electron charge densities computed from wave functions or data obtained through X-ray crystallography to identify reactive sites in a molecule.22:56
nmz787_ihttp://fujioizumi.verse.jp/visualization/VENUS.html22:57
nmz787_ihttp://idav.ucdavis.edu/~okreylos/ResDev/VolVis/MainPage.html22:57
nmz787_ipaperbot: http://dl.acm.org/citation.cfm?doid=1073204.107321922:59
paperbothttp://libgen.org/scimag/get.php?doi=10.1145%2F1186822.107321922:59
fennacm doesnt work23:00
nmz787_ihe he23:00
nmz787_ii can see it23:00
nmz787_iit literally uses cartoons for examples23:01
nmz787_ithere is goofy throwing a baseball23:01
fennyou don't get a 404?23:01
nmz787_iI guess its through work23:01
kanzurewhy are you still at work?23:02
kanzureand why does intel have a subscription to acm23:02
kanzurecan you show me what the watermarks look like?23:02
nmz787_iheh23:02
nmz787_iumm23:02
nmz787_ican you tell me what you are looking for?23:03
kanzurejust curious if the watermarks are the same as at universities23:03
fennhttp://fennetic.net/irc/Large_mesh_deformation_using_the_volumetric_graph_Laplacian.pdf23:03
delinquentmeOHHH KAY.23:04
delinquentmeGrowth factors (Igf1, Igf2, Hgf, Fgf1, Tgfb1) in combination with cytokines (Il1, Il6, Tnf) coordinately promote cellular proliferation and the remodeling of the hepatic matrix composition which characterize the second stage of hepatic repair23:04
delinquentmebrb23:05
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fennmakes sense that intel would subscribe to acm23:05
kanzureintel could just fucking buy acm23:05
kanzurefuck acm23:05
nmz787_ii'm at home23:05
fennsee my previous ranting about union of libraries23:06
fennthe source code is 35k?23:07
fennoh. The classes and the example program rely on the Vrui VR development toolkit (not contained in the tarball)23:07
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fenni'm continually amazed at how much high quality free software is not in debian23:20
kanzure.wik milnet23:20
yoleaux"In computer networking, MILNET (Military Network) was the name given to the part of the ARPANET internetwork designated for unclassified United States Department of Defense traffic." — http://en.wikipedia.org/wiki/Milnet23:21
nmz787_iis the source avail?23:21
kanzureMILNET is a terrible name23:21
kanzure"During the 1980s the MILNET expanded to become the Defense Data Network, a worldwide set of military networks running at different security levels. In the 1990s, MILNET became the NIPRNET."23:21
kanzure"NIPRNET is the largest private network in the world.[citation needed] Over the last decades[when?] it has grown faster than the U.S. Department of Defense can monitor, which is why DoD spent $10 million in 2010 to map out the current state of the NIPRNET, in an effort to analyze its expansion, and identify unauthorized users, who are suspected to have quietly joined the network.[2] The NIPRNET survey, which uses IPSonar software developed by ...23:22
kanzure... Lumeta Corporation, also looked for weakness in security caused by network configuration.[3] The Department of Defense has made a major effort over the last few years,[when?] to improve network security.[4] The Pentagon announced it was requesting $2.3 billion in the 2012 budget to bolster network security within the Defense Department and to strengthen ties with its counterparts at the Homeland Security Department."23:22
kanzureoh brother "IPsonar provides visibility into every IP asset, host, node, and connection on the network, performing an active probe and mapping everything that's on the network, (not just an IP range that is supplied for scanning) resulting in a comprehensive view of the entire routed infrastructure."23:23
nmz787_iisn't there some nix tool for that too?23:24
nmz787_inmap or something23:24
kanzureuh, yeah23:25
fennhttp://idav.ucdavis.edu/~okreylos/ResDev/AMRVis/MouseLevel4.png http://idav.ucdavis.edu/~okreylos/ResDev/AMRVis/MouseDetail.png MOUSE scan :P23:25
kanzurenot bad23:26
nmz787_ihttp://www.scl.ameslab.gov/MacMolPlt/23:27
nmz787_ihttp://www.cmbi.ru.nl/molden/molden.html23:28
fenndid linux even have 3d graphics drivers in 199823:28
nmz787_ihuh, that mentions AMBER23:28
nmz787_iwhich I think that proteinShop program was using23:28
nmz787_i" It can write a variety of graphics instructions; postscript, XWindows, VRML, povray, OpenGL, tekronix4014, hpgl, hp2392 and Figure"23:29
nmz787_ihmm, all these links should be going into the wiki23:30
nmz787_ihttp://www.chemissian.com/23:30
kanzure.title23:31
yoleauxChemissian: software to analyze spectra, build density maps and molecular orbitals23:31
fennthey sure picked the worst screenshots for the top of the molden page23:32
kanzuretypical vtk/mayavi stuff23:33
fenna browser which supports client-side file upload (Netscape, version 2.0b2 and up)23:34
fennnmz787_i: so pymol does electron density calculations? or it just displays them?23:35
fenn(either way it probably uses GAMESS)23:36
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kanzureabe?23:44
dingolol @ tekronix401423:44
dingothis is a very impressive demo of a tektronix display, https://www.youtube.com/watch?v=T-F7ZySfgZ023:45
kanzure.title23:45
yoleauxtek400623:45
kanzureneat23:46
kanzure4m44s is what i want23:46
dingoyeah vector graphics, we sortof lost that at some point, dunno why it fell to the wayside23:47
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dingoi think the display can draw faster than this, too, i think this is just a network/serial limitation of some sort23:47
kanzurein my mind this is what my terminal looks like: http://www.smartfellowspress.com/Escape%20NY%20Map.JPG23:48
kanzurehttp://upload.wikimedia.org/wikipedia/en/c/c7/Escape_From_New_York_Wireframe.jpg23:48
fennlong persistence phosphor display, i one painted a wall with glow in the dark paint and hacked up a UV laser scanner to do that: http://fennetic.net/portfolio/IMG_4883.JPG23:49
dingoaha yeah that looks pretty great23:50
kanzurehow did you point the laser?23:50
fenngalvanometers driven from a 5 channel sound card23:50
dingoin my mind i remembered wargames a bit better than an ascii map, i guess it was ascii, darn, http://assets.nydailynews.com/polopoly_fs/1.1383871!/img/httpImage/image.jpg_gen/derivatives/landscape_635/wargames28n-2-web.jpg23:51
fennit was actually an RGB laser vector display but we were only using the blue laser (which had quite a bit of UV in it)23:51
fennthis thing was so cool http://fennetic.net/portfolio/IMG_4519.JPG23:52
dingohttps://github.com/jvtm/wm3con <- better world map23:52
kanzurethat's a lot of setup23:52
kanzurei keep forgetting the name of physics optics board stuff23:52
kanzureikia science board pegs?23:53
fennoptical breadboard, the main supplier is thor labs23:53
kanzureblah23:53
kanzurelet's get eric hunting on that23:53
fenntake me to your leader http://fennetic.net/fiat-lux/IMG_4559.JPG23:54
kanzurewere all those lenses really necessary23:55
fenneh? there's only one lens and one beam splitter per laser23:55
dingore: milnet, i might implement "RFC 927, "TACACS User Identification Telnet Option", describes a method of identifying terminal clients by a 32-bit UUID, providing a form of 'rlogin'. This system, published in 1984, was designed for MILNET by BBN, and the actual TACACS implementation is undocumented, though partially re-imagined by Cisco in RFC 1492. Essentially, the user's credentials are forwarded to a TACACS daemon to verify that the client does in fact have 23:56
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dingothis one is more interesting,  RFC 933, "Output Marking Telnet Option", describes a method of sending banners", such as displayed on login, with an associated ID to be stored by the client. The server may then indicate at which time during the session the banner is relevant. This was implemented by Mitre for DOD installations that might, for example, display various levels of "TOP SECRET" messages each time a record is opened -- preferably on the top, bottom, l23:57
fennit should overlay "TOP SECRET" in a red stamp-mark over the top of the entire screen, just to make sure23:59
fennand blinking23:59
fennbetter yet, just don't show anything except top secret23:59
--- Log closed Wed May 07 00:00:44 2014

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