2014-07-18.log

--- Log opened Fri Jul 18 00:00:07 2014
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archels_https://www.kickstarter.com/projects/486671231/integrated-space-plan-envisioning-humanitys-future07:30
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kanzure_http://www.newscientist.com/article/dn25916-bubble-wrap-used-for-cheap-blood-and-bacteria-tests.html08:18
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ybiti'm not so sure the keyboard on this xps15 is ideal for remote work11:26
ybitthe macbook pro has a really nice keyboard11:26
ybitunfortunately i need facetime, and i refuse to use my phone everytime i have to make a video call11:27
ybits/facetime/a webcam11:27
kanzure_what's wrong with the keyboard?11:27
ybittakes more force to type11:28
ybitcoming from cherry reds to macbook pro to xps15, you definitely notice the difference11:29
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cluckjhack osx onto it?11:36
ybitthe macbook pro keyboard ya mean? that would be nice, but i'll just wait until the novena is ready11:37
kanzure_ybit: i've been recommending this to everyone http://www.amazon.com/ZAGG-FOLZKFLEXSLV-Zagg-ZAGGkeys-FLEX/dp/B00695OFE211:38
ybitthat would be a nice keyboard to put on the novena!11:40
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nmz787_ithat ZAGG keyboard looks way better than the 1 i got for $1112:26
nmz787_ithe first time i used it keys got stuck under the frame12:26
nmz787_iand it doesn't have that neat stand for your phone!12:26
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nmz787_ihttp://www.youtube.com/watch?v=XsWo8apgLys12:48
kanzure_.title12:48
yoleaux'Weird Al' Yankovic's TACKY (Parody of Pharrell's 'Happy') Official Music Video12:48
nmz787_ihe's releasing a new video everyday12:49
nmz787_iExclusive "Weird Al" Yankovic Music Video: FOIL (Parody of "Royals" by Lorde)12:50
nmz787_ihttp://www.youtube.com/watch?v=w-0TEJMJOhk12:50
nmz787_iExclusive "Weird Al" Yankovic Music Video: FOIL (Parody of "Royals" by Lorde)12:51
nmz787_ihah12:51
nmz787_ithat one mentions diybio and transhumanism, basically12:53
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nmz787_ihttp://www.youtube.com/watch?v=8Gv0H-vPoDc12:55
nmz787_i.title12:55
yoleaux'Weird Al' Yankovic - Word Crimes12:55
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nmz787_ithat one has at least a DNA helix in it12:58
nmz787_ialineinc.com "Proof of Concept:    Batches of 10 to 30 parts   Cost: per batch $1500-5000 USD   2-5 Design iterations over 1–3 months"   "Discussion and application optimization; 3-7 days. Fabrication; 3-5 days."13:20
nmz787_i"No ceiling or floor of any channel is covered with adhesive                       Channel width minimum, 125 microns                 Feature density: require 0.5 mm spacing for 250 micron thick channels                 Typical alignment 0.005”, 0.002” possible with additional fixturing          Through holes or channel ends are oversized to accommodate alignment shifts"13:21
nmz787_ithey have fluoropolymers available for materials13:22
kanzure_hah $150/prototype13:26
nmz787_idecent compared to a lot of the companies i've come across13:26
kanzure_why would 10 to 30 be 1500-3000 if 1500*3 is only 450013:26
kanzure_oops 1500-5000 i mean13:26
nmz787_ithey have diff materials13:27
kanzure_$150/prototype is pretty steep, especially if you're going to need 1000 prototypes13:27
nmz787_iand diff features, presumably of varying difficulties to manufacture or assemble13:27
nmz787_iwell it's better than the $7k/per some other company told me13:27
kanzure_cheaper to just spincoat and etch ourselves overall13:29
nmz787_iheh13:32
nmz787_iwell, not for you13:32
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FourFireis this very large photolithography?14:06
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kanzure_no14:52
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cluckjKSP update, there goes my weekend...15:26
kaafirlol15:36
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superkuhYep. Time to crash asteroids into each other.15:47
cluckjx64 binary too <316:05
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nmz787_iwhat's KSP?16:41
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nmz787_ia game?16:43
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nmz787_ihttp://en.wikipedia.org/wiki/Mario_Teaches_Typing#I_Am_a_Teacher:_Super_Mario_Sweater16:45
nmz787_i"Using the program, players could design the sweater they want and the company would make it for 2900 yen (~$24)."16:46
cluckjkerbal space program16:52
FourFirenmz787, Kerbal Space Program is like the sims, as a physics simulator where you run a planetary space program16:52
nmz787_ihuh, I never knew about the nintendo satellite link http://en.wikipedia.org/wiki/Satellaview16:53
ParahSailin_nmz787_i: 10x coverage approx per lane16:53
ParahSailin_~$1k pax16:53
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nmz787_iahh, sweet, thx16:55
nmz787_ihttp://en.wikipedia.org/wiki/SimCity_6416:56
nmz787_i"a city-building video game developed by HAL Laboratory and published byNintendo for the Nintendo 64DD. The game and this peripheral were released exclusively in Japan. SimCity 64 is not to be confused with the Nintendo 64 port of SimCity 2000, which was developed and released in 1997 by an entirely different developer, Imagineer."16:56
nmz787_iThat game looks like I would have spent tons of time playing it when I was a kid16:56
ParahSailin_you want blast for looking at that catalogue?16:57
ParahSailin_nmz787_i: is the ngs on humans things you want to do or a hypothetical16:57
nmz787_iParahSailin_: I have a friend who was just diagnosed with cancer, and their sister and dad and grandfather (or grand parents) also had cancer16:59
nmz787_ithey told me they have a friend at Johns Hopkins who does cancer research and was interested in doing a familial study17:00
nmz787_inot sure if they are willing to throw down $8k17:00
nmz787_ithe grandparents would need to be exhumed from graves17:00
ParahSailin_i dont think contigs are gonna do anything special for them17:00
ParahSailin_thats why i said 23andme17:01
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nmz787_iParahSailin_: blast for those strings was just an idea so I could be lazy about writing code to extract the substring17:01
nmz787_isince the part # could potentially have spaces or hyphens17:01
ParahSailin_blast is a seeded alignment algorithm17:01
ParahSailin_so you could make a hashtable of kmers i suppose and search17:01
nmz787_ican't I use it for local alignments?17:01
ParahSailin_thats what blast does17:02
nmz787_ii thought i could say blast(string1, string2)17:02
nmz787_iand get a list of matches with scores17:02
nmz787_i(and I would just choose the top match)17:02
ParahSailin_ncbi's code base is a mess, i dont think you want to hack list search and non-aa/nt stuff in17:03
nmz787_iya17:03
nmz787_itrue17:03
kanzure_you could go look at the biopython source code17:03
ParahSailin_more work than just do the shit yourself17:03
ParahSailin_biopython doesnt blast17:03
ParahSailin_it only parses blast xml17:03
ParahSailin_you still use the ncbi blastn17:03
nmz787_ii found some other aligner that seemed to work OK17:04
kanzure_well what about bioperl (shoot me now)17:04
ParahSailin_any needleman wunsch function will work for you17:04
nmz787_ihttps://github.com/alevchuk/pairwise-alignment-in-python17:05
ParahSailin_sorry no you want smith waterman17:05
ParahSailin_i made ffi bindings for li heng's shit once for python i think17:05
ParahSailin_maybe i only did for haskell17:06
nmz787_i'water.py 'implemented Needleman-Wunsch algorithm'17:06
nmz787_iwtf17:06
ParahSailin_https://github.com/attractivechaos/klib/blob/master/ksw.c17:06
nmz787_i"Original Smith-Waterman implementation in Python was forked from http://narnia.cs.ttu.edu/drupal/node/104 by Forrest Sheng Bao http://fsbao.net"17:06
nmz787_iunfortunately for some reason octopart was rate-limiting my script, even though it didn't seem to do it when I used the link I'm trying to scrape in Chrome17:07
nmz787_iso I think I may end up just bloating the hell out of my code by going full-blown integrated GUI browser17:08
nmz787_iI almost had it working as just some HTML and JS but I couldn't get bind clicks in the octopart iframe17:08
nmz787_i:(17:08
nmz787_iyay for security I guess17:08
nmz787_idid anyone else in here think that canyon.mid sounded like the Snoopy theme song?17:09
nmz787_imaybe this crowd is not Windows-friendly enough17:10
nmz787_ibbl17:10
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nmz787does no one remember canyon.mid?17:35
nmz787http://en.wikipedia.org/wiki/George_Stone_(composer)#Trip_Through_the_Grand_Canyon17:39
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kanzurehaha octopart ratelimiting their users, what a riot17:44
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kanzuretaskrabbit's new site suucks :(17:48
nmz787anyone know of an audio prog that would give me % similarity out of two songs?17:50
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kanzuremake tmux usable: set-window-option -g mode-keys vi21:33
dingo:) agreed21:34
dingoespecially for back buffer copy and past21:35
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kanzurei keep forgetting about C-s and C-r21:42
kanzure"tmux removed search?? wtf"21:42
dingominimalists should use dtach :)21:48
dingoi did for years before i discovered tmux21:49
dingoi had gnu/screen burn me a few times, the terminal emulator crashes/locks up on rare occasions21:49
dingobut tmax hasn't failed me yet21:49
dingotmux..21:49
dingotheres a tmux clone written in python if i recall21:49
kanzurei strongly doubt that i qualify as a minimalist21:52
dingowell i gotta return to terminal programming land... fucking linux kernel tty is the most complex tty driver i've found across all of solaris, darwin, free, and openbsd, intel x86 and linux go well together, they both win not for their good design but sheer brute force21:55
dingoConnectionError: HTTPSConnectionPool(host='oddnetwork.org', port=1984): Max retries21:55
dingoexceeded with url: /messages/x84net/129 (Caused by <class 'socket.error'>: [Errno 1121:56
dingo1] Connection refused)21:56
dingodid we crash you haliphax? :)21:56
dingooops wrong channel, see, i should be a minimalist21:58
dingoi can't handle more than 1 chat channel21:58
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caternisn't there a project to move the linux tty to userspace22:11
caternwith KMS or something22:11
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--- Log closed Sat Jul 19 00:00:08 2014

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