2014-08-08.log

--- Log opened Fri Aug 08 00:00:28 2014
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kanzurebeep09:34
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superkuhpaperbot: http://www.sciencemag.org/content/345/6197/63710:37
paperbothttp://libgen.org/scimag/get.php?doi=10.1126%2Fscience.125423410:37
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kanzurepaperbot: http://www.nber.org/papers/w1943011:09
kanzure.title11:09
yoleauxDo fixed patent terms distort innovation? Evidence from cancer clinical trials11:09
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/Do%20fixed%20patent%20terms%20distort%20innovation%3F%20Evidence%20from%20cancer%20clinical%20trials.pdf11:09
kanzure"Patents award innovators a fixed period of market exclusivity, e.g., 20 years in the United States. Yet, since in many industries firms file patents at the time of discovery (“invention”) rather than first sale (“commercialization”), effective patent terms vary: inventions that commercialize at the time of invention receive a full patent term, whereas inventions that have a long time lag between invention and commercialization ...11:09
kanzure... receive substantially reduced - or in extreme cases, zero - effective patent terms. We present a simple model formalizing how this variation may distort research and development (R&D). We then explore this distortion empirically in the context of cancer R&D, where clinical trials are shorter - and hence, effective patent terms longer - for drugs targeting late-stage cancer patients, relative to drugs targeting early-stage cancer patients ...11:09
kanzure... or cancer prevention. Using a newly constructed data set on cancer clinical trial investments, we provide several sources of evidence consistent with fixed patent terms distorting cancer R&D. Back-of-the-envelope calculations suggest that the number of life-years at stake is large. We discuss three specific policy levers that could eliminate this distortion - patent design, targeted R&D subsidies, and surrogate (non-mortality) clinical ...11:09
kanzure... trial endpoints - and provide empirical evidence that surrogate endpoints can be effective in practice."11:09
dingoam i correct in supposing that, if i knew your login and password, and sniffed your ssh session (with which you authenticated using password, not a private key), then the encryption of your transport is weaker?11:15
dingoi imagine it would be weaker, i just don't know to what degree11:16
dingoopenbsd's anoncvs is 'anoncvs@cvs.openbsd.org' with no password, on the other hand, so they must think it protects the transport, at least -- they're not trying to secure against easedropping, just packet injection in such case11:17
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nshwhere can i find an acronis true-image file to analyse the format for magic strings?11:31
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delinquentmekanzure, ParahSailin ... I still growing older .. and looks like i gonna die within the next 100 years11:47
delinquentmemakes sad.11:47
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jrayhawkdingo: SSH does D-H key exchange; you can't sniff anything useful.14:03
jrayhawkPassword exchange happens with the D-H'ed transport.14:04
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kanzureevidence? "The Propeller 1 is open source! Ready to play with the Verilog code?"14:26
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jrayhawkhttp://www.parallax.com/downloads/propeller-1-design14:33
gradstudentbotWho got mustard on my cell culture?14:34
jrayhawkpresumably physical circuits are left as an exercise for the reader14:35
kanzureaha "Propeller 1 design and example files to be run on DE0-Nano or DE2-115 development board for Propeller 1 design experimenters"14:36
kanzurethat is acceptable evidence14:36
gradstudentbotThat would be highly informative, wouldn't it?14:38
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dingo17:35 < jrayhawk> http://www.parallax.com/downloads/propeller-1-design14:51
dingothats what runs my Apple I replica :)14:51
dingohttp://www.brielcomputers.com/wordpress/wp-content/uploads/2010/06/replica1plus_med.jpg14:51
dingoit does mostly the video terminal work, its still a real 6502 cpu and 1mhz clock, but theres a seperate channel for the parallax14:52
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superkuhpaperbot: http://standards.ieee.org/getieee/C95/download/C95.1-2005.pdf15:00
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/556302d2ba263ec942f88cb01ae8ac49.txt15:00
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[nsh]is there not a standard unix tool for finding largest common substrings in [binary] files?16:14
caternhmmmmmmm16:17
kanzureblast?16:18
kanzureactually i feel like i did that for pokemon16:18
kanzurensh: https://github.com/kanzure/pokemon-reverse-engineering-tools/blob/master/pokemontools/comparator.py16:19
gradstudentbotI'll be at the microscope.16:19
kanzurethis is obviously a very not generic implementation16:19
[nsh]hmm, looking thanks16:20
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bbrittain[nsh]: strings16:28
bbrittainit's just called strings16:28
* [nsh] makes eyes at bbrittain 16:28
bbrittainwait. what. I'm serious.16:29
[nsh]i have three binary files. i want to put the names of those binary files as arguments to a piece of software that will then produce the longest sequence of bytes that they all have in common16:30
[nsh]how do you think strings is going to help?16:31
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bbrittain[nsh]: ahh, see you said substrings. strings can help with that :P16:33
bbrittainbut not just random bytes16:33
* [nsh] nods16:33
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bbrittain[nsh]: why would you want to do this out of curiosity?16:34
[nsh]to determine known plaintext of a file format to use for a cryptographic attack against pkzip encryption16:35
kanzurebecause he is singing the mission impossible song very loudly and he can't keep doing it for the next 8 hours16:35
kanzureso he needs software to speed it up16:35
* [nsh] smiles16:35
[nsh]i bet i could sing the mission impossible theme for 8 hours16:36
[nsh]*100 hours16:36
bbrittain[nsh]: http://dl.acm.org/citation.cfm?id=200410016:42
bbrittainpaperbot: http://dl.acm.org/citation.cfm?id=200410016:42
paperbothttp://libgen.org/scimag/get.php?doi=10.1007%2Fs11263-011-0430-616:42
bbrittainhave fun :)16:43
* [nsh] smiles16:43
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bbrittainI just went to coursera17:16
bbrittainthey tried to get me to sign an NDA17:16
bbrittainI left17:16
kanzurethat's cute17:18
bbrittainlike. what the hell.17:18
kanzurethey are part of the alternative universe where uh..17:19
kanzurewell i'm not sure.17:19
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* heath is eating dinner..17:26
heathrecommended videos?17:26
* heath wants a video explaining toehold dna strand displacement17:26
kanzureheath: i can only give you https://www.youtube.com/watch?v=JUgEmezpS_E17:27
ParahSailinkanzure: my project for today https://github.com/rcallahan/UNAFold/blob/master/src/hybrid-ss-min.c17:28
ParahSailinsearch for g_ in browser, each little yellow marker is a global17:29
kanzuredo you just hate me or something17:29
kanzurei wonder if llvm could clean this crap up17:30
ParahSailinso ive refactored it, now just hunting for all the memory leaks17:30
kanzureno // comments17:30
kanzureonly 40 /* comments */17:30
ParahSailini guess thats because // is not ansi c or something17:30
kanzurei like how everyone and their mom thinks they have to reimplement matrix math17:31
ParahSailinthis is actually not matrix math17:31
ParahSailinit is just matrix lookup tables17:31
kanzurehmm.17:31
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ParahSailinalso note that it only works with -DINTEGER and -DPRECISION=100017:34
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delinquentmekanzure, are you familiar w the igem business model?18:16
delinquentmeis it closed source?18:16
delinquentmeI though it was open ... or are people just paying for the built biobrick sequence molecules?18:16
kanzuretheir wiki was originally based on open source software i think, but they have heavily modified it18:17
kanzurewith piles of perl18:17
kanzurethe competition definitely has entrance fees, which i'm sure they are using to fund their use of venues (at least)18:18
kanzureand probably also to fund the creation and distribution of the biobrick catalogs to every team18:18
kanzurei think most of the sequences are available online, but only a handful (less than 30?) are marked as "biobrick public license"18:19
delinquentmeOHHH so MOST of the biobricks you actually have to pay the $3500 to get access to18:21
kanzurephysical access? iirc they do not ship to anything that isn't an igem team.18:22
delinquentmenah like can I only get access to the "biobrick public license" genes?18:28
ParahSailinigem is .org so no business model18:30
delinquentmeParahSailin, is that a real conclusion?18:32
delinquentmehaha sorry that was unnecessarily flippant18:32
delinquentmebut they're taking income :D18:32
kanzure.orgs have business models18:48
kyknos_paperbot: http://www.nature.com/nrg/journal/v11/n1/pdf/nrg2626.pdf18:55
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/bdc53a04e56b2e2d7d5f2a26c68d35ea.pdf18:55
kyknos_thank you lady18:56
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kanzuremusicstuff https://www.youtube.com/watch?v=c5IpYXnfpvQ20:05
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--- Log closed Sat Aug 09 00:00:29 2014

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