2014-12-13.log

--- Day changed Sat Dec 13 2014
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nmz787juri_: after getting the package installed, it was super easy to get these examples loaded into meshlab http://www.implicitcad.org/docs/tutorial01:33
nmz787juri_: do you have any more complex/real examples?01:33
nmz787i turned the quality up to 100000 and extopenscad reported With resolution 4.341268e-201:43
nmz787but I'm not sure what units01:43
nmz787hmm, I found some other 2D examples, like https://github.com/nathan7/nateplate/blob/master/nateplate.escad01:47
nmz787that example actually might be very useful, since it seems to demonstrate some modularity01:50
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archels.title https://www.sendspace.com/file/idszpx07:32
yoleauxDownload Aubrey de Grey Response.pdf from Sendspace.com - send big files the easy way07:32
kanzurearchels: should i feel bad for never having gone to a society for neuroscience conference?07:34
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kanzure.wik axon guidance07:37
yoleaux"Axon guidance (also called axon pathfinding) is a subfield of neural development concerning the process by which neurons send out axons to reach the correct targets. Axons often follow very precise paths in the nervous system, and how they manage to find their way so accurately is being researched." — http://en.wikipedia.org/wiki/Axon_guidance07:37
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kanzure.wik pioneer axon07:37
yoleaux"Pioneer axon is the classification given to axons that are the first grow in a particular region. They originate from pioneer neurons, and have the main function of laying down the initial growing path that subsequent growing axons, dubbed follower axons, from other neurons will eventually follow." — http://en.wikipedia.org/wiki/Pioneer_axon07:37
kanzurehttp://www.sfn.org/~/media/SfN/Documents/Annual%20Meeting/FinalProgram/NS2014/Pages/ns2014_sessions.ashx07:38
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archelskanzure: probably not07:59
archelsI have a predilection for smaller conferences myself, anyway07:59
archelsit's probably a good place for networking, though08:00
kanzurehm08:00
kanzureso i was thinking maybe it is an okay overview of what everyone in neuroscience is working on?08:00
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kanzurethis is a strange ai wiki: https://code.google.com/p/ahuman/wiki/BrainAreaFEC08:21
eudoxiai remember this, i downloaded a pdf of a book from the source dir08:22
kanzurehttps://code.google.com/p/ahuman/wiki/OnIntelligenceReview08:25
kanzurehttps://code.google.com/p/ahuman/wiki/OnIntelligenceRewritten08:25
kanzurehttps://code.google.com/p/ahuman/wiki/ArchitectureModelV208:26
kanzure"Plausible compared to human - local connections, major components are based on human design"08:26
kanzure"Design should allow using ordinary computer, not Blue Brain one"08:26
kanzure"Design should take into account priority of life features over intelligence features"08:26
kanzurethat is an interesting constraint08:26
kanzure"life features"08:26
archelskanzure: definitely08:29
archelsquick and condensed08:29
archelsthe fast food of neuroscience08:29
kanzurehttps://code.google.com/p/ahuman/wiki/OverallCircuits08:30
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kanzurehttps://github.com/numenta/nupic.core08:51
fennhum i wonder why freenode dropped blowfish encryption for for sasl authentication08:53
kanzuresomeone should try brain imaging plus typing prediction, so that stimulation studies can try to induce specific typing08:55
kanzureyou could even have a per-user calibraiton phase where you look at how they type words from a <2k word corpus08:55
eudoxiakanzure are chording keyboards not fast enough for you :>08:55
kanzureand then blast ultrasound to make similar patterns of activation08:55
kanzureno this is an alternative to microelectrode-based methods of dumping bits into brains08:55
fenntyping eh08:55
kanzurethe prblem is that if you wanted to insert data into a human brain you don't know what to stimulate really08:56
fennyou know most people aren't hooked into the matrix like you are08:56
kanzurei think many people are able to type08:56
fennthey have to poke at the keys one by one08:56
kanzureso those subjects would be skipped for any of these hypothetical experiments -_-08:56
kanzureshouldn't that be obvious?08:56
kanzurei probably shouldn't expect motor-related stimulaton to propagate information backwards into the other parts of the brain08:58
fennwhat happens when you've trained your machine learning algorithm on people who learned to type a certain way and then in the real world it encounters 90% of the people doing it "wrong"08:58
fennmy real point though was that typing is occupying a tiny specialized part of the brain that has little to do with interesting stuff08:58
kanzuremotor planning?08:58
fennright08:59
fennit's actually big because you have to move stuff08:59
fennbut still i think it's not valuable to be able to force people to type stuff08:59
kanzurei wasn't talking about forcing people to type08:59
fenni know that's not what you intended but it would be the effect of the experiment you described09:00
kanzurei was thinking that somatosensory stimulation doesn't seem likely to work (for reasons i can't clearly describe)09:00
kanzurenot all motor-related neural matter in human brain is motor-execution stuff09:00
fennit's not?09:01
kanzureyou can do motor planning without motor execution09:01
fennO RLY09:01
fennwhat was the name of that EMG collar that picked up subvocalizations from your larynx nerves09:03
kanzuresouthernstarpaw09:03
eudoxiais that a joke on the northpaw09:04
fennanyway the fact that subthreshold EMG even exists would mean that "practicing" movements is really just executing the movement at below threshold output levels09:05
fennhave i fallen through a time portal into a different universe again? why do i have to explain this to you09:06
kanzure"practicing" is not planning09:06
kanzure"practicing" is not "planning"09:06
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kanzurei am trying to figure out what this ahuman person has been doing wrong if anything09:09
fennthey had paraplegics driving wheelchairs around with this subthreshold EMG collar.. what was it called09:09
kanzurethat was the other universe damn it09:09
kanzurekeep your cosmoses separated09:09
kanzureyou don't want worms to happen again do you?09:10
fennthe shai-hulud is unstoppable09:11
fenndoes "ahuman" mean "one human" or "not human"09:12
kanzurehttps://www.youtube.com/watch?v=OQbBTlkDSpU&list=PLgO7JBj821uEPwFiOKzetby0W1lBHMhCD&index=3709:12
kanzurenot sure09:12
fenn.title09:12
yoleauxIlya Gerus - Cosmosis // Abstract Space Records - YouTube09:12
kanzure"specificaly against humans"09:12
fenni think that would be "ahumanist"09:13
kanzure*fart*09:13
fennwtf they have 550 brain region pages09:13
kanzureheh09:13
kanzurehe has some pile of code but it is just basic things like "multi-threaded execution of a pool of neurons" and "generic classes to represent links between pools of neurons" or something09:15
fennthat sounds pretty good to me09:19
fennthe insane over-specification of brain areas and nerve placements seems misguided09:20
fennas if we could ever figure it all out without actually scanning a brain and tracing all the connections09:20
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kanzure"all connections" is overkill09:20
kanzurenot even the genome specifies all connections09:20
fennof course not09:20
fennbut it's like having a copy of the human genome to look at09:21
fennvs chromosome maps or whatever09:21
kanzurechromosome maps?09:22
fennlooks like this project has been around since 200909:24
fennthey were able to localize certain genes to certain chromosomes before sequencing the whole thing09:26
kanzurewhat about it?09:27
fennbut it was a very low resolution model09:27
kanzurei think there is a strong possibility that neuroscience people are capable of studying the brain in some amount of detail between "the brain exists" and "having all knowledge of all connections between all neurons in a specific specimen"09:27
fennit's very convenient to have a whole map you can zoom in and out of, instead of a bunch of scattered pictures and a blurry high level overview09:28
kanzurezooming is not an argument for "as if we could ever figure it all out without actually scanning a brain and tracing all the connections"09:29
fennalso you can theoretically run simulations and poke at the simulation in order to see what happens09:29
fennlike the visual6502 simulation09:30
kanzurevisual6502 does have modules of functions, screw you09:30
fennjust knowing the structure of a few modules and a photo of the whole chip won't let you make a working (accurate) simulation09:31
kanzureyou weren't making a simulation of an existing chip you were attempting to make a microprocessor09:31
kanzuremicrochips are a terrible example for you to give because we've been reverse engineering those since forever09:32
fennsure, also if a single part fails the whole thing is useless09:32
kanzurewhy are you so repulsed by the existence of neuroscience literature?09:32
fennit's just too much data to ever comprehend09:32
fennand it's not formalized as far as i can tell09:33
kanzurewhat do you mean by formalized09:33
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fennthere's no standard way to describe things unambiguously09:33
fennso you can't just load all the data we have into a computer09:33
fennit's as if people were trying to make google maps from a bunch of directions given by old people "go over the hill, then see a barn on the left with a rooster windmill and turn right"09:35
fennbut they can't agree on what a barn is09:35
kanzurei think they have agreed09:35
fennand you're like "just shut the fuck up and give me GPS coordinates"09:35
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kanzurehttp://www.bostonglobe.com/news/science/2014/12/10/solving-postdoc-problem-national-report-suggests-higher-pay-better-mentoring/GaI3uLT1JmdxaylZHmdIdM/story.html09:37
kanzure"An exhaustive, 120-page national report on the state of scientific postdoctoral researchers released Wednesday urges a range of reforms to ensure that thousands of well-educated scientists do not spend their most creative years in low-paid training for jobs that are in scarce supply." no shit?09:37
kanzurereport http://www.nap.edu/catalog/18982/the-postdoctoral-experience-revisited09:37
kanzure"The report, released by three of the most prestigious national organizations in science, engineering, and medicine, suggests postdoctoral researchers should receive higher salaries, better mentoring, and a time limit on how long they can work in those jobs."09:37
kanzure"One of the main problems with understanding the postdoc problem that is underscored in the report is the lack of information about the population, sometimes called the “invisible people” of science. The estimate of how many postdocs there are in the U.S. varies widely, from 60,000 to 100,000 people."09:39
kanzure"They are compensated significantly less than other similarly trained peers. In the biomedical sciences, people spend on average six to seven years earning a doctoral degree. The new report found that people in the life sciences who then went on to take a postdoc job were compensated on average $42,000 per year, while their peers who held a doctorate who took a non postdoc position received $65,000."09:39
fennhuh i thought there were more than that09:39
kanzure"A five-year limit on how long a person can spend working as a postdoc. Introducing a new tier of staff scientists for people who would like to do science but do not wish to start their own laboratories. Introducing a range of career paths starting in the first year of graduate school, to help change the idea that everyone should simply go on to a postdoc."09:40
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kanzure"Increasing postdoc salaries. The National Institutes of Health pays $42,000 per year for its postdoctoral award, and this amount is often used as the baseline by institutions across the country. The report suggests this should be increased to $50,000 per year." er.. $50k is better of course, but this is not going to solve systemic problems. there should be a range between $40k and $500k.09:40
fennhow is "60k-100k" a "glut"09:42
kanzurenumber of available academic jobs?09:43
kanzurecompetition with grad students?09:43
fenn"The problem is that any researcher running a lab today is training far more people than there will ever be labs to run"09:43
fenn 09:45
fenn“As I got older and developed more outside responsibilities . . . it became easier to have more postdocs than graduate students because they didn’t need as much supervision. You could have a bigger lab that way without occupying more of your time,” Petsko said. “I could have done almost as much science and just about as good science with a significantly smaller lab.”09:45
fennsounds like they are in demand by PI's09:46
fennPetsko said he is the “poster child” for how the system can go wrong, by building a laboratory that leaned heavily on efficient, smart postdocs who could do science productively, rather than emphasizing their training.09:47
fennhow is that "going wrong"09:47
fennit seems like the real problem is that postdocs don't get enough credit and can't use the results of their work for personal advancement09:49
kanzureeh, sure, their results are owned by the lab/university09:50
kanzureand methods09:50
fennnot what i mean, although that is a problem too09:51
fennYdenberg, 33, has an impressive resume: he earned a PhD at Princeton, then went for a postdoc at Brandeis. This summer, a decade into his training, he realized that not only were the odds of getting a faculty job against him, but he didn’t think he really wanted one. He felt burnt out.09:52
archelskanzure: one could argue that motor planning is internal execution09:52
fennToday, Ydenberg is pursuing a job that gives him real joy, building websites.09:52
archels"all the brain is for motor control", etc.09:52
fennalong those lines we incorporate machines into our body image09:53
kanzurefenn: can you imagine the sort of hell you would have to be in for building websites to seem like an enjoyable career prospect?09:53
fennyou're not "operating a vehicle" so much as "moving with an updated body map"09:53
fennsimilar situation with moving around in directory tree09:54
fenni think that's why hierarchical filesystems still haven't died09:55
fennit fits our evolved "mouse in a tunnel" navigation processes09:56
kanzurei see no difference between those two09:57
fenngood :)09:58
kanzurerefusing to read neuroscience is a good way for you to remain ignorant, you know09:58
fenni have been reading it, and there's a shit ton, and there's no obvious starting point or sense of progress09:58
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fennon intelligence was the only book that actually seemed to help09:59
fennbut you're a packer so you wouldn't understand09:59
fenndoes anyone actually get something useful out of images like this http://www.nature.com/nrn/journal/v3/n4/images/nrn783-f2.jpg10:02
fennmarginally better with colors, but still a spaghetti ball http://ars.els-cdn.com/content/image/1-s2.0-S0149763410000965-gr1.jpg10:04
kanzureyes, i get something like "they have a csv file somewhere that they are not sharing and they are assholes"10:05
kanzurei am really glad none of you jerks have my 2005 position paper on "on intelligence"10:07
kanzurelooks like the internet doesn't have it10:14
kanzurebut the interwebs do seem to have this http://postbiota.org/pipermail/tt/2007-November/001855.html10:14
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fennno, a neuron is not modeled by simple integration10:20
fennthe threshold for firing is just a number, but i think biology is like this too (minus arguments about inputs on the same axon branch being stronger than on different branches, i guess)10:21
kanzurethere is definitely a perceptron model that involves using integrals over sums of weights10:33
kanzurei am using perceptron loosely here to refer to things that people have called ANNs10:33
kanzurei also don't understand why you think i would think that a neuron is accurately modeled by a single integral, argh10:35
kanzurenothing in that page should indicate to you that i have ever thought that10:35
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fennis there a drug that will let you remember your dreams12:58
fenni think this happened when i first ate red palm oil12:59
nmz787dream herb13:04
nmz787c. zachatechi or something13:04
nmz787.wik http://en.wikipedia.org/wiki/Calea_ternifolia13:05
yoleaux"Calea ternifolia (syn. Calea zacatechichi) is a species of flowering plant in the aster family, Asteraceae. It is native to Mexico and Central America. Its English language common names include Thepelakano (leaves of god), bitter-grass, Mexican calea, and dream herb." — http://en.wikipedia.org/wiki/Calea_ternifolia13:05
fennside effects include hallucinations, nausea, and vomiting.13:06
fennso it probably affects the serotonin system13:06
fenni guess what i'm after is to block whatever happens that causes you to forget your dreams13:07
fennmy short term memory is really bad for about 30 minutes after waking up; i assume this is supposed to prevent me from remembering my dreams since they didn't really happen13:07
fennhmm http://en.wikipedia.org/wiki/Oneirogen http://en.wikipedia.org/wiki/Category:Oneirogens13:08
fennatropine.. no13:09
nmz787dream herb never gave me any weird effects outside of enhanced dream memory and vividity13:09
fennhow did you acquire it13:09
nmz787i've had some for a few years but haven't taken it13:09
nmz787idk internet13:09
nmz787amazon probably most recently13:09
nmz787or bouncing bear botanicals, or mt rose herb13:10
nmz787ya amazon has it13:15
jrayhawkPoor dream recall is a B6 deficiency symptom.13:15
nmz787jrayhawk: this enhances dreams though, unless I was always naturally deficient13:15
nmz787during the time i originally discovered it, I also did the other 'good practice' things too though, so it could have been a synergism back then... like having a dream journal13:16
nmz787its actually pretty cool to randomly open a notebook while looking for some research notes to find it was a dream journal13:17
nmz78710+years later13:17
fennbut you only remember the things you wrote, not the dream itself13:18
nmz787i remember the imagery13:19
nmz787even now, without the journal in front of me13:19
nmz787my point was, i remembered the dream more clearly when I woke up and wrote it down as best I could, before having to go to high school or whatever and forgetting it in the onslaught of a normal day13:20
fennthat's what i used to think, until i realized that i was remembering the story i had made up to explain the dream, and the imagery that goes with that story13:21
fennbecause occasionally i'd remember flashes of some weird thing that didn't fit the story13:21
fennbut there was no obvious way to put it into a narrative13:22
fennremember is probably the wrong word though13:22
nmz787maybe, but maybe you are more a narrator than an image explainer?13:22
nmz787(i mean maybe we are different kind of story tellers)13:23
nmz787anyway, it's cheap enough to try, and apparently most people don't have negative side effects13:24
nmz787cause 10-15 years later I see it on amazon13:24
fennthere's usually a whole lot of information that goes along with whatever images/places/people are in the dream, and just getting all that information down on a page would take too long, so you have to hint at things instead of deliberately slogging through biographical data and technical terms for clothing and architecture that i probably don't even know13:24
nmz787oh ya13:24
nmz787especially when you're waking up and your hand doesn't want to scribble13:25
nmz787but i remember noting certain key facts about pre-lucidity13:25
fennor like, if you're a secret agent and there's a whole long rationale about how you beleaguered nation has been in a cold war with bregna for 15 years, you don't really have to come out and say it13:25
nmz787like the radio station changing on the car radio when I did a double-take13:25
kanzurejrayhawk: what about perfect dream recall13:35
kanzure'cause mom claims to have hours of dream recall per night/morning13:35
jrayhawkimpressive13:35
kanzureshe says it's exhausting13:35
fenntell her to sleep in her dreams :P13:36
kanzureyes usually i have to outline multiple separate dreams if i want to have a chance of correctly remembering them13:38
kanzureand then later fill in the elaborations or whatever13:38
kanzureotherwise i lose number four or five13:39
fennyour typing speed is probably a big advantage here13:39
jrayhawk"The present study investigated dream recall frequency and dream content of patients with insomnia in comparison to healthy controls. Patients' dream recall frequency was elevated [...]" "A decline in polysomnographic sleep quality was associated with a decline in reported dream or nightmare recall frequency."13:40
jrayhawkwell, thanks, science, it's good to know that things are both correlated and reverse correlated13:41
jrayhawkthat clears everything up13:41
* kanzure looks through his dreams/ folder13:42
kanzurethere is one about being really mad at the zoo for not letting me into the underground secret zoo13:42
fennthose bastards13:42
fennkeeping the mutant turtles for themselves13:43
fennappeared in Denver in 2006 with no memory of his name or where he was from. After his appearance on national television, to appeal for help identifying himself, his fiancée Penny called Denver police identifying him. The episode was diagnosed as dissociative fugue.13:47
fenndear lazyweb who am i13:47
fennOn May 31, 2009, an Air France plane (Air France Flight 447) carrying 228 people from Brazil to France crashed into the Atlantic Ocean, killing everyone on board. The pilot of the plane reported "I didn’t sleep enough last night. One hour – it’s not enough,"13:54
fennthere really ought to be some simple test where you strap a camera on someone's face and record an eeg while they zone out for a couple minutes13:57
fennlike a breathalyzer interlock but for sleepiness13:57
nmz787fenn: that's an interesting idea14:05
fennthere are numerous systems for passenger cars but it seems like it would be more important for commercial drivers14:06
fennsupposedly chernobyl was caused by sleep deprivation14:11
kanzurewell so was your mom14:13
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fenn"Kudryavtsev, Aleksandr: present in the control room at the moment of explosion; received fatal dose of radiation during attempt to manually lower the control rods as he looked directly to the open reactor core; posthumously awarded the Order "For Courage"14:56
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nmz787$12 http://www.amazon.com/250mA-Position-Pneumatic-Electromagnetic-Solenoid/dp/B00A15FUU4/ref=sr_1_28?s=industrial&ie=UTF8&qid=1418467863&sr=1-28&keywords=air+solenoid+valve+3way15:38
nmz7872 position 3 way15:38
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nmz787I think these are the same (mixed reviews of the 3 on amazon) http://www.ebay.com/itm/DS-Sale-3V1-06-DC-12V-2-Position-3-Way-Pneumatic-Solenoid-Valve-/321484652512?pt=LH_DefaultDomain_0&hash=item4ad9fa7fe015:40
nmz787$715:40
fenni'm utterly underwhelmed by the fukushima radiation doses received ... "Three workers were exposed to radiation and two were rushed to a hospital with up to 180 mSv"15:40
fennthis is the equvalent of living near a volcanic beach in brazil, or 10 CT scans15:42
fenn"acute dose level estimated to increase cancer risk 0.8%"15:42
fennrush them to the hospital!15:42
kanzureisn't cancer risk like 100% on a long enough timeline?15:43
fennprobability of turning into a bowl of petunias is 100% on a long enough timeline15:44
kanzurei am sure someone has planted petunias in human ash + soil15:44
fenn.wik infinite improbability drive15:44
yoleaux"The fictional universe of The Hitchhiker's Guide to the Galaxy series by Douglas Adams is a galaxy-spanning society of interacting extraterrestrial cultures. The technological level in the series is highly advanced, though often unreliable. Many technologies in the series are used to poke fun at modern life." — http://en.wikipedia.org/wiki/Infinite_improbability_drive15:44
fenn"following research into finite improbability, which was often used to break the ice at parties by making all the molecules in the hostess' undergarments leap one foot simultaneously to the left, in accordance with the theory of indeterminacy". It further explains that many respectable physicists wouldn't stand for that sort of thing, "partly because it was a debasement of science, but mostly15:47
fennbecause they didn't get invited to those sort of parties."15:47
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delinquentmenmz787, me gusta16:12
delinquentmealso you know about the use of mechanical solenoids for controls right?16:12
delinquentmeive been chatting w a dude from quakes lab about this stuff16:12
delinquentmemost impressive of which are the switch schemes which require no wash steps ... as the paths which are generated do not overlap :D16:13
juri_nmz787: i certainly do.16:18
juri_first, i have a test suite at https://gitorious.org/implicitcad/implicitcad-tests/16:21
kanzure"synaptome"17:07
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juri_second, i have a very large part i have been designing for weeks.17:31
kanzurehttps://news.ycombinator.com/item?id=8746788 "The article suggests that SpaceX does not use specialized, radiation hardened onboard computers, but rather they use triple redundant off-the-shelf computers."17:36
kanzuresee also http://aviationweek.com/blog/dragons-radiation-tolerant-design17:36
delinquentmeTIL!18:07
delinquentmecool solution18:07
delinquentmeI wonder if there are instances where triple redundancy is insufficient...18:07
delinquentmethis would correlate w the proximity of the sources which do the bit switching ja?18:07
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kanzurei bet alcor has corny videos that go like, "Hi, I'm Max More, and today I am going to show you emergency procedures for maintaining dry ice. In the event that this facility has been abandoned, please see the containers to your right..."20:39
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!rajaniemi.freenode.net [freenode-info] channel flooding and no channel staff around to help? Please check with freenode support: http://freenode.net/faq.shtml#gettinghelp21:39
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kanzurehmph21:41
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