2015-10-10.log

--- Log opened Sat Oct 10 00:00:52 2015
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JayDuggerGood morning, everyone.04:17
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kanzurezoop doot06:11
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chris_99nmz787, are you about per chance/06:17
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kanzurething that parses for file paths from stdin text, to skip having to remember a file path to type later i guess https://github.com/facebook/PathPicker06:55
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kanzuremulti-user penetration testing IDE thing https://github.com/infobyte/faraday06:56
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kanzurehardware for automatic breaking of combination locks https://github.com/samyk/combobreaker (this seems like overkill)07:11
chris_99why does it seem overkill?07:12
FourFirefaster means better means you can do more07:16
kanzurequadcopter drone thing that hijacks other drones (the one that had insecure root on a private wireless network, i think) https://github.com/samyk/skyjack07:17
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kanzure"successfully grown healthy intestine atop a 3-D scaffold made of a substance used in surgical sutures; .. researchers report their laboratory-created intestine successfully regenerated gut tissue in the colons of dogs with missing gut lining"07:32
kanzure"Intestinal stem cell growth and differentiation on a tubular scaffold with evaluation in small and large animals" http://www.futuremedicine.com/doi/abs/10.2217/rme.15.7007:33
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kanzure.title https://www.reddit.com/r/Futurology/comments/3ncujs/bioviva_treats_first_patient_with_gene_therapy_to/07:35
yoleauxBioViva Treats First Patient with Gene Therapy to Reverse Aging : Futurology07:35
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kanzure"Nikola Danaylov of Singularity Podcast did interview BioViva's CEO Liz Parrish last month" https://www.singularityweblog.com/bioviva-ceo-liz-parrish-on-gene-therapy/07:35
kanzureah this is a better summary, as usual https://www.fightaging.org/archives/2015/10/bioviva-moving-ahead-with-human-gene-therapy-for-telomerase-activation.php07:36
kanzureok just telomerase activation stuff, sorta strange choice for them to go with for gene therapy but ok07:36
kanzure.wik artemisinin07:42
yoleaux"Artemisinin /ɑrtɨˈmɪsɨnɨn/, also known as qinghaosu (Chinese: 青蒿素), and its semi-synthetic derivatives are a group of drugs that possess the most rapid action of all current drugs against Plasmodium falciparum malaria. It was discovered by Tu Youyou, a Chinese scientist, who was awarded half of the 2015 Nobel Prize in Medicine for her discovery." — https://en.wikipedia.org/wiki/Artemisinin07:42
kanzure.wik ivermectin07:42
yoleaux"Ivermectin (22,23-dihydroavermectin B1a + 22,23-dihydroavermectin B1b) is a broad-spectrum antiparasitic drug in the avermectin family." — https://en.wikipedia.org/wiki/Ivermectin07:42
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gnushahttps://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=8290e98a Bryan Bishop: improve dna synthesis machine summary >> http://diyhpl.us/diyhpluswiki/dna/synthesis/notes/08:07
kanzureconjugation and ligation steps are still big questionmar08:12
kanzure*questionmark08:12
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-!- Topic for ##hplusroadmap: biohacking, nootropics, transhumanism, open hardware | sponsored by lobsters everywhere, banned by the Federal Death Administration (5 times) | this channel is LOGGED: http://gnusha.org/logs | http://diyhpl.us/wiki | "ray kurzweil is a pessimist" - george church13:43
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delinquentmeLOLZ14:32
delinquentmekanzure, nmz787 yashgaroth figured out our orientation problem.14:32
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delinquentmejuul,14:57
delinquentmeany idea if theres an AFM or STM @ omni?14:57
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kanzurewhat was the orientation problem?15:00
maakuis there anyone working on reversible computing architectures?15:18
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kanzure.title https://www.fbi.gov/about-us/lab/biometric-analysis/codis/stds_testlabs15:23
yoleauxFBI — Standards for DNA Testing Labs15:23
kanzurefbi study of iontorrent's stuff http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757157/15:23
kanzurefrom https://news.ycombinator.com/item?id=1036697415:23
kanzure.title http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=8356106&fileId=S174236000000097615:24
yoleauxEpisteme - Epistemics for Forensics - Cambridge Journals Online15:24
delinquentmeHOWDO: high fidelity long chain PCR15:25
delinquentmelike gigabase length15:25
delinquentmesomeone suggested redux what venter did ... but that seems like a fucking pain in the ass15:26
kanzurein vitro compartmentalized directed evolution of polymerases that correctly replicate gigabase length dna15:26
kanzurebut probably starting with shorter lengths15:26
delinquentmehahaha15:27
delinquentmethanks kana15:27
delinquentmekanzure,15:27
kanzuredo most polymerases suck at really long dna? what's the limit?15:28
kanzurei mean they do 10 kbp/sec, they can't fall off after only 100 kbp.....15:28
delinquentmeunsure but theres a thing as high fidelity tax polymerase15:28
delinquentmethis is bad.15:30
delinquentmei already think I'm fucking god.15:30
kanzureif they do fall off after a few minutes, you could select for polymerases that stay attached for a few hours or days. but you would have to cycle between selecting for grip duration and also ability to actually polymerize, because otherwise you'll just get a dna binding enzyme.15:30
kanzurei don't think god appreciates your sexual advances15:30
delinquentmeappreciation isn't part of it15:31
delinquentmeit just happens15:31
kanzurenot familiar with tax polymerase15:32
delinquentmehttp://www.hindawi.com/journals/mbi/2014/287430/15:32
kanzure.title15:33
yoleauxkanzure: Sorry, that doesn't appear to be an HTML page.15:33
kanzure"Error Rate Comparison during Polymerase Chain Reaction by DNA Polymerase"15:33
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delinquentmejust the thought that i can build these tools ...15:44
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delinquentmei kinda can't wipe this smile off my face15:44
delinquentmehttp://www.hindawi.com/journals/mbi/2014/287430/tab1/15:47
delinquentme"phusion hot start " enzyme supposed to be 50x fidelity of typical taq polymerase15:48
yashgarothit sure is15:57
yashgarothp.s. 15–30 seconds/kb15:58
delinquentmeyashgaroth, so far so good btw ... nobody has come up w a counter to my hypothesis that ligase is non-magical15:59
delinquentmeso i've got an engineer friend of mine who's helping me build some STMs15:59
delinquentmewe plan on making 515:59
delinquentmebecause they're fucking cheap ... and redundant prototypes are the best15:59
delinquentmeplz place orders now16:00
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kanzureeh maybe i'll get in on some of that17:09
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kanzure.title http://www.nature.com/mp/journal/vaop/ncurrent/full/mp2015108a.html17:50
yoleauxMolecular Psychiatry - A genome-wide analysis of putative functional and exonic variation associated with extremely high intelligence17:50
kanzurehrm "This observation is consistent with the hypothesis that rare functional alleles are more frequently detrimental than beneficial to intelligence."17:51
kanzure"If you want a concrete example of genetic limits, look at running in the olympics. ALL olympic sprinters have the "fast twitch" muscle gene."17:53
kanzure.title http://www.ncbi.nlm.nih.gov/pubmed/2364405217:54
yoleauxInflammatory cytokines in depression: neurobiological mechanisms and therapeutic implications. - PubMed - NCBI17:54
kanzure.wik glutamate-glutamine cycle18:03
yoleaux"In biochemistry, the glutamate-glutamine cycle is a sequence of events by which an adequate supply of the neurotransmitter glutamate is maintained in the central nervous system." — https://en.wikipedia.org/wiki/Glutamate-glutamine_cycle18:03
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Jawmarewhile I am at it, any paper request?18:53
fennreminds me of the ACME corporation's "portable hole" from looney tunes http://www.extremetech.com/extreme/186229-its-like-staring-into-a-black-hole-worlds-darkest-material-will-be-used-to-make-very-stealthy-aircraft-better-telescopes19:26
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kanzureJawmare: thanks for asking, but nothing in the queue at the moment19:58
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kanzurelake: hi22:13
lakekanzure: hi, was reading22:25
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--- Log closed Sun Oct 11 00:00:53 2015

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