--- Day changed Thu Jul 16 2009 00:32 * ybit is appreciative of samples from companies 00:33 < ybit> is it bad to tweet to one's self on irc for a couple of hours?.. 00:35 < ybit> sylgard 184 00:36 < ybit> $34.88/250ml 00:36 < ybit> http://css.superioressex.com/scripts/wscssprd.wsc/op/op_indexB2C.html 00:36 < ybit> ^where i found the price 00:37 < ybit> http://www.dowcorning.com gives free samples 01:00 -!- any42026396 [n=someone@75-120-24-239.dyn.centurytel.net] has joined #hplusroadmap 01:02 < ybit> so i need some type of photolith setup 01:02 < ybit> the led setup first comes to mind 01:03 < ybit> and then there's the projector/microscope thingie that genehacker had been talking about 01:04 < ybit> and to do photolith, i probably need a cleanroom, this room i'm in will do. has ac and heat, a window, all that it's lacking is an air purifier, and some other slight modifications, e.g. the door 01:07 < ybit> 6k is rather expensive 01:08 < ybit> 2k-4k i can afford 01:08 < ybit> usd 01:17 -!- katsmeow-afk [n=someone@99-194-252-204.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 01:20 < ybit> 16:52 < genehacker> microscope's displaying image 01:20 < ybit> 16:54 < genehacker> and it's not fuzzy 01:21 < ybit> and this your mircroscope photolith device, genehacker? 01:21 < ybit> s/and/is 01:23 < ybit> heybryan.org is down 01:23 < ybit> was looking for papers/protein-purification/notes.txt 01:32 -!- ybit [n=ybit@unaffiliated/ybit] has quit ["rebooting into the new gentoo system"] 01:38 -!- ybit [n=ybit@unaffiliated/ybit] has joined #hplusroadmap 02:01 -!- any96367336 [n=someone@75-120-28-112.dyn.centurytel.net] has joined #hplusroadmap 02:19 -!- any42026396 [n=someone@75-120-24-239.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 03:17 -!- any70223034 [n=someone@75-120-15-128.dyn.centurytel.net] has joined #hplusroadmap 03:36 -!- any96367336 [n=someone@75-120-28-112.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 04:16 < splicer> i saw people are building microscopes from webcams 04:45 < drazak> ping anyone that can download papers from pubmed for me 04:45 < drazak> kanzure: 04:45 < drazak> f 04:45 < drazak> fenn: 04:46 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19556500?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:47 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19458646?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:47 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19421585?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:48 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19345319?ordinalpos=21&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:51 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19273094?ordinalpos=50&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:52 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19245527?ordinalpos=55&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:55 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19197982?ordinalpos=71&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:56 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19188756?ordinalpos=81&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:56 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19188753?ordinalpos=82&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:57 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19144668?ordinalpos=96&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:57 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19131912?ordinalpos=103&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:58 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19105617?ordinalpos=120&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 04:59 < drazak> http://www.ncbi.nlm.nih.gov/pubmed/19093804?ordinalpos=133&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum 05:00 < drazak> kanzure, fenn, ybit: could one of you grab those and email them to be at ben.gadoua@gmail.com 06:56 < kanzure> ybit: you can do photolithography with a UV lamp, SU8, and a mask 06:56 < fenn> are there any studies on the long term health effects of listening to techno 24/7? 07:00 < kanzure> http://www.springerlink.com.ezproxy.lib.utexas.edu/content/u948767115kn4x60/ 07:00 < kanzure> The long-term effects of auditory training on children with autism 07:34 < ybit> drazak: i can, but don't have time right now, am leaving for work 07:49 < kanzure> drazak: it would have been nice if you would have just given us a text file 08:03 < Utopiah> checked http://wiki.creativecommons.org/Content_Curators but found nothing related to free electronic blueprint repository, recommendations? 09:38 < kanzure> what about free electronic blueprint repository? 09:38 < kanzure> there isn't one out there yet 09:38 < kanzure> although there is liquidwares or something 09:38 < kanzure> but anyway, it sucks, and I wouldn't rely on it 09:39 < kanzure> fenn: where can I find catalogs for DC motors? 09:40 < fenn> DC motors arent used very often in industry 09:40 < fenn> maxonmotorusa.com? 09:40 < fenn> depends how much you want to spend, i guess 09:40 < fenn> "Chana de Wolf Chana de Wolf Research for the Future and Beyond" 09:41 < kanzure> she's on acceleratingfuture.com and lifeboat? 09:41 < kanzure> srsly wtf 09:43 * fenn glances accusingly at ybit 09:45 < genehacker> dc motors? 09:45 < genehacker> techno 24/7? really? 09:48 < fenn> genehacker: that was mostly me being bitchy about kanzure not liking my african music 09:53 < kanzure> so, I could be improving djangit and writing some more unit tests (there are a few particular errors I should really work through) 09:53 < kanzure> or I could be installing pythonOCC 09:53 < kanzure> or throwing stones at HeeksPython 09:53 < genehacker> heh try some some music from einhander 09:53 < genehacker> it's techno but not quite 09:58 < genehacker> kanzure I believe so 09:58 < genehacker> on the UV light thing 10:12 < kanzure> what? 10:16 < kanzure> does anyone remember the name of the paper where the researchers used a CD to pattern sharpie ink 10:21 -!- genehacker [n=noko@cpe-67-9-157-136.austin.res.rr.com] has quit [Read error: 110 (Connection timed out)] 10:27 < kanzure> Patterning Design in Color at the Submicron Scale - Arun Chattopadhyay - stamps via CDs http://tinyurl.com/ddv4wd 10:27 < kanzure> aha 10:29 -!- genehacker [i=genehack@wireless-128-62-123-29.public.utexas.edu] has joined #hplusroadmap 10:37 -!- any98563655 [n=someone@99-195-185-157.dyn.centurytel.net] has joined #hplusroadmap 10:38 -!- kardan_ [n=kardan@p54BE6E89.dip.t-dialin.net] has joined #hplusroadmap 10:39 < kanzure> or I could be writing some new code for what I've been thinking of calling 'pymates' 10:39 < kanzure> (until it's worthy of importing into skdb) 10:39 -!- any25344294 [n=someone@75-120-36-68.dyn.centurytel.net] has joined #hplusroadmap 10:41 < genehacker> ??? 10:44 -!- any58658011 [n=someone@99-194-252-15.dyn.centurytel.net] has joined #hplusroadmap 10:46 -!- any98563655 [n=someone@99-195-185-157.dyn.centurytel.net] has quit [Read error: 104 (Connection reset by peer)] 10:47 -!- any22536575 [n=someone@75-120-6-89.dyn.centurytel.net] has joined #hplusroadmap 10:50 -!- any70223034 [n=someone@75-120-15-128.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 10:52 -!- Netsplit holmes.freenode.net <-> irc.freenode.net quits: kardan_, kardan| 10:53 -!- Netsplit over, joins: kardan_, kardan| 11:00 -!- Netsplit holmes.freenode.net <-> irc.freenode.net quits: kardan_, kardan| 11:00 -!- Netsplit over, joins: kardan_ 11:02 -!- any25344294 [n=someone@75-120-36-68.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 11:05 -!- any58658011 [n=someone@99-194-252-15.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 11:10 < fenn> http://www.opencascade.org/org/community/projects/?d_id=10 11:11 < kanzure> http://projects.opencascade.org/projects/assembly.html 11:14 -!- genehacker [i=genehack@wireless-128-62-123-29.public.utexas.edu] has quit [Read error: 110 (Connection timed out)] 11:22 < kanzure> http://www.opencascade.org/org/doc/ 11:22 < kanzure> did they leave off a link on this pag 11:22 < kanzure> *page? 11:27 < fenn> yes 11:28 < fenn> (again) how to install pythonOCC on ubuntu: http://pastebin.ca/1497209 11:32 -!- any22064424 [n=someone@75-120-5-225.dyn.centurytel.net] has joined #hplusroadmap 11:33 -!- capsid [i=96b0c8fd@gateway/web/freenode/x-d0981ae7dd8f68fe] has joined #hplusroadmap 11:36 < drazak> kanzure: sorry 11:36 < drazak> kanzure: it was late 11:42 -!- any20857519 [n=someone@75-120-0-200.dyn.centurytel.net] has joined #hplusroadmap 11:44 * fenn does the tutorial http://www.opencascade.org/org/gettingstarted/appli/ 11:45 -!- any66123108 [n=someone@75-120-22-94.dyn.centurytel.net] has joined #hplusroadmap 11:47 -!- any60559038 [n=someone@75-120-4-186.dyn.centurytel.net] has joined #hplusroadmap 11:49 -!- any09818610 [n=someone@75-120-11-226.dyn.centurytel.net] has joined #hplusroadmap 11:49 -!- genehacker [i=genehack@wireless-128-62-123-29.public.utexas.edu] has joined #hplusroadmap 11:50 -!- any22536575 [n=someone@75-120-6-89.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 11:50 -!- capsid [i=96b0c8fd@gateway/web/freenode/x-d0981ae7dd8f68fe] has quit ["Page closed"] 11:50 -!- capsid [i=96b0c8fd@gateway/web/freenode/x-91df0be633986146] has joined #hplusroadmap 11:53 -!- any44410113 [n=someone@75-120-47-162.dyn.centurytel.net] has joined #hplusroadmap 11:54 -!- any66123108 [n=someone@75-120-22-94.dyn.centurytel.net] has quit [Read error: 60 (Operation timed out)] 11:55 -!- any64870635 [n=someone@75-120-4-62.dyn.centurytel.net] has joined #hplusroadmap 11:56 < fenn> i need to start making a list of OCC acronyms and what they stand for 11:56 < kanzure> please do 11:56 < kanzure> can you put it on http://adl.serveftp.org/dokuwiki/occ ? 12:00 -!- any22064424 [n=someone@75-120-5-225.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:00 -!- any98162352 [n=someone@75-120-22-50.dyn.centurytel.net] has joined #hplusroadmap 12:02 -!- any98567353 [n=someone@99-194-251-43.dyn.centurytel.net] has joined #hplusroadmap 12:02 -!- any20857519 [n=someone@75-120-0-200.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:05 -!- any87301721 [n=someone@75-120-35-150.dyn.centurytel.net] has joined #hplusroadmap 12:07 -!- any64870635 [n=someone@75-120-4-62.dyn.centurytel.net] has quit [Read error: 60 (Operation timed out)] 12:07 -!- any60559038 [n=someone@75-120-4-186.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:07 -!- any51816055 [n=someone@75-120-21-211.dyn.centurytel.net] has joined #hplusroadmap 12:09 -!- any43923901 [n=someone@75-120-28-153.dyn.centurytel.net] has joined #hplusroadmap 12:09 < fenn> this might be helpful to get an overview of OCC (unfortunately the snippets are useless since you cant download pythonizer): http://pythonizer.org/pythoncascade/gallery.html 12:10 < fenn> some of them certainly look familiar http://pythonizer.org/pythoncascade/gallery/geo15.htm 12:10 -!- any49097522 [n=someone@75-120-40-20.dyn.centurytel.net] has joined #hplusroadmap 12:10 < fenn> i guess jelle just copied all of it and pythonOCC-ified them 12:11 -!- any09818610 [n=someone@75-120-11-226.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:12 -!- any44410113 [n=someone@75-120-47-162.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:12 -!- any83099518 [n=someone@75-120-8-111.dyn.centurytel.net] has joined #hplusroadmap 12:12 -!- any98567353 [n=someone@99-194-251-43.dyn.centurytel.net] has quit [Read error: 60 (Operation timed out)] 12:14 -!- genehacker [i=genehack@wireless-128-62-123-29.public.utexas.edu] has quit [Read error: 110 (Connection timed out)] 12:19 -!- any98162352 [n=someone@75-120-22-50.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:22 * fenn wonders if `sudo chgrp lab ./ -R` was a good idea 12:22 -!- any29107185 [n=someone@75-120-26-242.dyn.centurytel.net] has joined #hplusroadmap 12:23 < fenn> but seriously what's up with all the "root root" files 12:23 < drazak> kanzure: drazak.net/~drazak/pubmedlist 12:23 -!- any47791713 [n=someone@75-120-5-35.dyn.centurytel.net] has joined #hplusroadmap 12:25 -!- any87301721 [n=someone@75-120-35-150.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:27 -!- any72173229 [n=someone@99-195-187-63.dyn.centurytel.net] has joined #hplusroadmap 12:27 -!- any51816055 [n=someone@75-120-21-211.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:27 -!- any43923901 [n=someone@75-120-28-153.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:29 -!- any49097522 [n=someone@75-120-40-20.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:30 -!- any97802270 [n=someone@99-194-252-162.dyn.centurytel.net] has joined #hplusroadmap 12:33 -!- any54292467 [n=someone@75-120-43-50.dyn.centurytel.net] has joined #hplusroadmap 12:33 -!- any83099518 [n=someone@75-120-8-111.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:34 -!- any07390743 [n=someone@75-120-46-39.dyn.centurytel.net] has joined #hplusroadmap 12:35 < kanzure> http://adl.serveftp.org/lab/opencascade/ 12:35 < kanzure> fenn: http://adl.serveftp.org/lab/opencascade/OpenCASCADE_src.tgz 12:36 -!- any06387016 [n=someone@75-120-36-21.dyn.centurytel.net] has joined #hplusroadmap 12:39 -!- any53864221 [n=someone@99-195-188-186.dyn.centurytel.net] has joined #hplusroadmap 12:40 -!- any93094855 [n=someone@75-120-26-83.dyn.centurytel.net] has joined #hplusroadmap 12:40 < kanzure> http://adl.serveftp.org/lab/opencascade/pdf/ 12:40 < kanzure> there we go 12:41 -!- any29107185 [n=someone@75-120-26-242.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:42 < kanzure> http://adl.serveftp.org/lab/opencascade/doc/ 12:42 < kanzure> http://adl.serveftp.org/lab/opencascade/doc/Overview/ 12:44 -!- any47791713 [n=someone@75-120-5-35.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:44 < drazak> kanzure: it'd be great if I could get those papers some time before sunday 12:47 -!- any72173229 [n=someone@99-195-187-63.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:48 < fenn> ok i'll stop bitching.. i should've read this i guess http://www.opencascade.com/customers/successmain/ 12:51 -!- any59157454 [n=someone@75-120-2-60.dyn.centurytel.net] has joined #hplusroadmap 12:51 -!- any97802270 [n=someone@99-194-252-162.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:51 -!- any54292467 [n=someone@75-120-43-50.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 12:52 < kanzure> http://adl.serveftp.org/lab/opencascade/pdf/ocaf.pdf 12:54 -!- any06387016 [n=someone@75-120-36-21.dyn.centurytel.net] has quit [Success] 12:55 -!- any07390743 [n=someone@75-120-46-39.dyn.centurytel.net] has quit [Read error: 110 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error: 110 (Connection timed out)] 14:00 -!- any55841570 [n=someone@99-194-249-144.dyn.centurytel.net] has joined #hplusroadmap 14:05 -!- any97778807 [n=someone@75-120-30-247.dyn.centurytel.net] has joined #hplusroadmap 14:05 -!- any01792216 [n=someone@99-194-248-253.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 14:08 -!- any42490611 [n=someone@75-121-61-107.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 14:09 < kanzure> http://github.com/abiggerhammer/djangit/blob/00479184fdeaee7db5bea5efb1d9fc9d066668ab/docs/mlp-workingnotes 14:10 < kanzure> meredith seems like fenn sometimes 14:11 -!- any53905228 [n=someone@75-120-218-15.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 14:11 -!- any01330577 [n=someone@75-120-35-64.dyn.centurytel.net] has joined #hplusroadmap 14:11 < fenn> clone army, attack! 14:14 -!- any12843377 [n=someone@99-195-192-70.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 14:16 -!- 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[n=someone@75-120-9-252.dyn.centurytel.net] has joined #hplusroadmap 14:53 -!- samrose [n=samrose@c-24-11-214-181.hsd1.mi.comcast.net] has joined #hplusroadmap 14:53 -!- any17620524 [n=someone@75-120-47-34.dyn.centurytel.net] has quit [Read error: 110 (Connection timed out)] 15:05 < bkero> Can I have a clone army? 15:06 < fenn> will clone for cookies 15:07 < kanzure> hell of a lot of cookies 15:07 < kanzure> ybit: go get the cookie dough 15:07 < drazak> bkero: I'll work on it in boston 15:09 < bkero> Just had an ex girlfriend in boston 15:09 < bkero> She's traveling around the east coast, she was trolling Boston yesterday 15:09 < drazak> nice 15:11 < ybit> we have a hooker in this city, one hooker 15:11 < bkero> Lots of snobbery 15:11 < bkero> Boston has a BUNCH of hookers 15:11 < bkero> They're all college students, trying to pay for school 15:11 < ybit> our hooker doesn't even look hookerish 15:12 < ybit> bkero: there's another name for that here: sorority chicks 15:13 * ybit should be quiet 15:13 * ybit interacts with them everyday 15:20 < drazak> lol 15:29 < fenn> is that what you kids are calling it these days 15:30 < kanzure> http://github.com/kanzure/pymates 15:34 < ybit> yes fenn, that is the urban word for sex 15:34 * ybit interacts with CIA-73 15:39 -!- genehacker [i=genehack@w-central-233-27.public.utexas.edu] has joined #hplusroadmap 15:39 < genehacker> most of the machines in the machine shop are manual??? 15:39 < ybit> genehacker: have you been working on projector based photolithography? 15:40 < genehacker> WTF 15:40 < genehacker> errr... 15:40 < genehacker> no 15:40 < ybit> what was the 'micrsocope is fuzzy' stuff yesterday? 15:40 < genehacker> I was using an SEM 15:40 < ybit> o.O 15:41 * ybit beats genehacker and steals the sem 15:41 < ybit> CIA-73: don't you say a word about this 15:41 < ybit> genehacker: so what were you using the sem for? 15:42 < genehacker> lol 15:42 < genehacker> the SEM is hard to move 15:42 < genehacker> looking at metal 15:42 < ybit> part of some class? 15:43 < genehacker> to see metal's metallic structure 15:43 < genehacker> yes 15:43 < ybit> why can't we have cool classes in the summer 15:44 < ybit> we have lame-o general ed in the summer, only a few specialized classes, none that are much interesting though 15:44 < genehacker> what's your major? 15:44 < ybit> molecular bio 15:44 < ybit> just getting into the molecular part of it 15:44 < genehacker> oh then that's why you don't get to use an SEM 15:45 < ybit> and the fact that my college sucks major balls 15:45 < genehacker> because you're not taking materials 15:45 < genehacker> which is an ME class 15:45 < ybit> which is why i'll be changing schools for one with a biomedeng undergrad degree 15:46 < genehacker> hey molecular biology can be useful 15:46 < genehacker> this class I'm taking isn't particularly fun either 15:46 < ybit> sure, but i want to take some ee courses too 15:47 < ybit> and some me course would be fun 15:47 < genehacker> the microscope couldn't even see stuff on the nanometer scale and it still was sort of fuzzy 15:47 < ybit> hey, as long as grant money is paying, i can do this 15:47 < genehacker> here's the deal most classes aren't fun 15:47 < ybit> true that 15:47 < genehacker> because you do the same stuff over and over and things get monotonous 15:48 < ybit> school is lame, but if i must go, then i'm going to take some of the more interesting ones 15:48 < genehacker> try underwater basketweaving 15:48 < ybit> best thing about school so far aside from drunken women thinking i'm hot at that particular moment is the professors. i like picking their brains 15:49 < ybit> actually, i know someone who majored in basketweaving :P 15:49 < ybit> now he's the head reference librarian here 15:50 < genehacker> so ybit can you get access to some FPLC machines? 15:50 < ybit> genehacker: that's a good question, i seriously doubt it 15:50 < ybit> couldn't hurt to email a few profs though 15:50 < genehacker> go for it 15:51 < genehacker> we'd like some purified protein 15:51 < genehacker> specifically some nucleotidase 15:51 < ybit> already asked for an inventory list from both the chem and bio department heads, didn't get anything 15:52 < ybit> proposed forming an i-gem team, nothing 15:52 < genehacker> someone tried to start an igem team here 15:52 < genehacker> didn't work out 15:52 < ybit> don't really care too much for i-gem, but i would have to take matters into my own hands if there's any off-campus event going on which i would like to be involved, which might not be a bad thing 15:57 < ybit> genehacker: so what are your plans when you graduate? 15:57 < ybit> work-wise 15:58 -!- strages [n=strages@c-68-62-216-5.hsd1.al.comcast.net] has quit [Read error: 113 (No route to host)] 15:59 < ybit> my goal is to simply make enough money to build a bio/chem/fab lab, automated garden, and house by the beach, with enough room for to launch machines into space; kind of ambitious 15:59 < ybit> -for 15:59 < kanzure> hm 15:59 < ybit> yes? 16:00 * ybit has been trying to figure out the money situation the past few days, i know that's such a nasty word to use in here 16:01 < ybit> figured if i save 10% of all my earnings for ~20 years, i should have enough for this 16:01 < kanzure> how much money do you need 16:01 < ybit> well, Smari says it's about 100kusd for a fablab now 16:01 < ybit> minimum 16:01 < ybit> phreedom seems to think you can have it for around 10k 16:01 < ybit> i don't think so 16:02 -!- genehacker [i=genehack@w-central-233-27.public.utexas.edu] has quit [Read error: 60 (Operation timed out)] 16:02 < ybit> i think it will cost about 100k minimum for the lab, 100k for the property, 100k for the house, 10-30k for misc. things 16:02 < kanzure> you think it would take 20 years to save 100k? 16:02 < ybit> this is the very minimum me thinks 16:02 < ybit> about 400k yeah 16:03 < ybit> the average for a research scientist is 20-40k/year 16:03 < kanzure> you need to check your math 16:03 < ybit> ..in spain 16:03 -!- strages [n=strages@c-68-62-216-5.hsd1.al.comcast.net] has joined #hplusroadmap 16:03 < kanzure> you shouldn't be a research scientist 16:03 < ybit> hah, then what? 16:03 < kanzure> join my startup? 16:03 < ybit> thought about neurosurgeon 16:03 < ybit> you have a startup? 16:03 < kanzure> well what do you think's going on in here? 16:04 < kanzure> bullshitting? 16:04 < ybit> hmm 16:04 * kanzure hops a bus 16:05 < ybit> argh, too quick for me. 16:05 < ybit> do you have a business plan, kanzure? 16:07 -!- capsid [i=96b0c8fd@gateway/web/freenode/x-91df0be633986146] has quit ["Page closed"] 16:15 -!- genehacker [n=noko@cpe-67-9-157-136.austin.res.rr.com] has joined #hplusroadmap 16:48 < Smari> ybit, for the fab lab as it is in the "standard" package, 100k. 16:49 < Smari> ybit, but if you're smart about it you can probably do better. 16:50 < Smari> it's the capabilities you want.. I'd say don't skimp on the laser, but definitely toss in a RepRap, find a good way to mill circuit boards - I don't support the Modela (Roland MDX-20) myself, it sucks... 16:51 < Smari> Shopbot is something you'll want, or at least something similar. 17:01 < Smari> Torchmates are nice but they're less reliable than the shopbot, although being designed for tool switching is a plus 17:08 < genehacker> mill circuit boards? 17:08 < genehacker> reprap can with some mods 17:19 < Smari> true 17:19 < Smari> reprap needs a good standard milling bit head. 17:20 < Smari> What btw is the accuracy of the reprap like on each axis? 17:20 < Smari> For good PCB milling it needs to be at least in the range of 30 microns or so 17:40 < drazak> how would you guys purify dina in a lab 17:40 < drazak> cells+chaps then centrifue? 18:00 -!- kardan| [n=kardan@p54BE6E89.dip.t-dialin.net] has quit [Read error: 54 (Connection reset by peer)] 18:02 -!- kardan| [n=kardan@p54BE6E89.dip.t-dialin.net] has joined #hplusroadmap 18:04 -!- any91946276 is now known as useless-afk 18:04 -!- useless-afk is now known as katsmeow-afk 18:07 < genehacker> why would we want to Purify Dina? 18:08 < genehacker> She's one of our friends 18:11 -!- samrose [n=samrose@c-24-11-214-181.hsd1.mi.comcast.net] has quit [Read error: 110 (Connection timed out)] 18:15 < kanzure> http://www.cs.utexas.edu/~mwalfish/diss.html 18:21 < Smari> kanzure, did we ever reach a conclusion on the file format for defining industrial processes? 18:21 < Smari> I think that conversation was mostly between Sam Rose, you, and myself.. 18:24 < kanzure> Smari: that's what's in the skdb repo 18:24 < kanzure> give me a few minutes 18:24 < kanzure> how long will you be awake? 18:25 < Smari> I should probably be going to sleep soon. 18:26 < drazak> genehacker: dna 18:26 < kanzure> okay. 18:26 < kanzure> well. yes, there's a file format that we've been working on 18:26 < kanzure> it is currently somewhat expressed in the repository 18:26 < kanzure> but it's not all in one place 18:26 < kanzure> because it's still in the testing stages 18:27 < Smari> Is it YAML? 18:27 < kanzure> http://github.com/kanzure/pymates/blob/032a6fd404af60e3efc608476058de5fd31ae72e/models/blockhole.yaml 18:27 < kanzure> yeah 18:28 < kanzure> that's a new repo and is not skdb 18:28 < Smari> I started defining an XML one way back when.. 18:28 < kanzure> it's a sub project that may be put into skdb eventually 18:28 < Smari> Ah. 18:28 < kanzure> if you have some of the XML laying around I'd love to see it 18:28 < Smari> That's not what I mean though 18:28 < kanzure> right 18:28 < kanzure> but take a look at this: 18:28 < drazak> kanzure: any luck finding any of those papers on http://drazak.net/~drazak/pubmedlist.txt? 18:28 < Smari> hang on, lets see if I can find it 18:28 < kanzure> http://github.com/kanzure/skdb/blob/2a25db93088ce8ee7ee0873e73a1cfa59e9dd2ec/processes.yaml 18:29 < kanzure> I lost my eyesight today so please bare with me 18:29 < kanzure> drazak: yeah I'll get to it now after dinner 18:29 < kanzure> will the server be up then? 18:29 < kanzure> Smari: one other thing to note 18:29 < Smari> Why did you lose it? 18:29 < drazak> will drazak.net? 18:29 < drazak> yes 18:29 < Smari> eyesight that is 18:29 < kanzure> http://github.com/kanzure/skdb/blob/2a25db93088ce8ee7ee0873e73a1cfa59e9dd2ec/screw.yaml 18:29 < kanzure> the glasses broke 18:29 < Smari> ah 18:29 < Smari> hehe 18:30 < Smari> no damage to the actual eyes then? 18:30 < drazak> kanzure: I was able to find Discher Putra and Malchesky 18:30 < kanzure> ack that screw is totally wrong 18:30 < kanzure> no damage to the eyes 18:30 < Smari> What I mean is different.. 18:30 < Smari> I can't find the XML.. 18:30 < Smari> but let me toss up a quick example 18:31 < kanzure> there are two things that are going on here I guess 18:31 < kanzure> (1) screw.yaml and blockhole.yaml are partial examples of a format for expressing parts/machines 18:32 < kanzure> (2) taxonomy.yaml is the manufacturing process YAML file 18:32 < kanzure> now, eventually, certain packages (#1) will implement certain attributes for the different processes (from #2) 18:45 < Smari> kanzure, http://smari.yaxic.org/hall-heroult.process -- example 18:45 < Smari> incomplete! 18:46 < Smari> With this you define a network of processes and materials, and could do a chain search.. 18:46 < Smari> This could also describe more things like "how to assemble a bike" 18:46 < Smari> but for now I'm more interested in more basic things. 18:47 < Smari> Like specific chemical reactions and industrial processes. 18:52 < Smari> Is it good? 18:56 -!- samrose [n=samrose@c-24-11-214-181.hsd1.mi.comcast.net] has joined #hplusroadmap 18:57 < Smari> oft cometh he of whom we speak. 18:57 < Smari> samrose, y0. 18:57 < Smari> samrose, check out: http://smari.yaxic.org/hall-heroult.process 18:58 < Smari> samrose, did we ever reach a conclusion in this discussion? 18:59 < samrose> Smari, we never got very far with that discussion. Can't recall why. I think we were both busy with other stuff 18:59 < Smari> samrose, yeah. It was an interesting and important one, but kind of just shored out. 19:00 < samrose> Can you remind me of where you last left it? 19:00 < samrose> that was it eh? http://www.appropedia.org/Callooh 19:00 < samrose> err 19:00 < Smari> Hmm. That may have been an icelandicism.. "shored out" - "fjaraði út"... dunno, is that something you'd say in English? 19:00 < samrose> http://smari.yaxic.org/hall-heroult.process 19:00 < samrose> shorted out definitely 19:00 < Smari> not the same then 19:00 < Smari> "fjaraði út" means like, "the tide went out"... 19:01 < Smari> nevermind 19:01 < samrose> I see 19:01 < Smari> samrose, I had written another XML file with more or less the same kind of feel to it as that one but I can't remember what happened to it, I just tossed that one together now. 19:01 < Smari> I had also written a draft DTD 19:02 < Smari> Which is now also gone. 19:02 < samrose> Smari did you lose these files? 19:02 < Smari> Both may have been lost when my hard drive crashed last december. 19:02 < samrose> argh, that sucks 19:03 < Smari> yeah 19:03 < Smari> But what do you think, is that something we could use? 19:03 < Smari> Very rudimentary... 19:03 < samrose> I think you are on the right track 19:04 < Smari> http://en.wikipedia.org/wiki/List_of_purification_methods_in_chemistry -- these might need some representation.. 19:04 < samrose> the idea of "process" is interesting, actually kind of different from what I have been talking to others about lately, but perhaps a better overall wrapper 19:05 < Smari> I honestly don't know enough about industrial engineering or chemical engineering to flesh out the DTD properly.. 19:05 < samrose> Hmmm...you've got me thinking 19:05 < samrose> I wonder if an hierarchical outline would even work for a process 19:06 < Smari> elaborate? 19:06 < kanzure> hello 19:06 < samrose> I mean, I can see how it would easily work 19:06 < kanzure> thanks for the example 19:06 < samrose> but, I am thinking about how chemical emulations of processes might do it 19:07 < kanzure> I encoded a list of separation processes into the YAML format the other day 19:07 < kanzure> there should be a copy of it in the latest commit of skdb 19:07 < Smari> essentially what I'm getting at is a machine readable Merck index that can be traversed. I point a piece of software at my personal inventory and say, "I want to build an airplane", and it searches through this database of processes and finds the shortest path from my inventory to the airplane and tells me what that path is and what else I'm going to need. 19:07 < kanzure> yep[ 19:08 < CIA-73> skdb: kanzure master * r3d50817 / inventory/hall-heroult.process : added smari example - http://bit.ly/9RGQI 19:08 < kanzure> smari did you read my email about retrosynthetic analysis? 19:08 < Smari> kanzure, nope. Which list? OM? 19:08 < samrose> Smari, yes this is what kanzure has essentially talked to me about too 19:08 < kanzure> it's a way of starting with an end-compound and then working back to simple starting materials (for chemistry) 19:08 < kanzure> but in all honesty this goes for everything (ever) 19:08 < Smari> kanzure, I'm backlogged by several hundred e-mails. 19:08 < kanzure> okay 19:08 < kanzure> just search for 'retrosynthetic' 19:09 < Smari> it wasn't on OM 19:09 < kanzure> ah here we go 19:09 < kanzure> http://groups.google.com/group/diytranshumanist/browse_frm/thread/a46d00dc5b9bd694/c839acccc360e2f8?lnk=gst&q=retrosynthetic#c839acccc360e2f8 19:09 < kanzure> well it was on diybio at least 19:09 < samrose> kanzure, I think it could be fairly simple to transform Smari's DTD to YAML should it ever need to be done. 19:09 < kanzure> (that's the diytranshumanist list but anyway) 19:09 < kanzure> samrose: yeah I agree 19:09 < kanzure> samrose: I haven't read through it yet though 19:09 < kanzure> I like how you have units in the file 19:09 < kanzure> that is especially important 19:10 < kanzure> however, 110kV is retarded 19:10 < kanzure> just say 110kV 19:10 < kanzure> there's a wrapper for GNU units in skdb at the moment 19:10 < kanzure> I wonder if I should wake up fenn 19:11 < kanzure> so what I'm doing this week is writing up something called 'pymates', a sub library of skdb to figure out how to connect things together 19:12 < kanzure> at the moment I'm just going to use this random interconnection method and then slowly add in ways to check whether or not there are conflicting/intersecting geometries 19:12 < kanzure> and then whether or not there are conflicting "units ranges" 19:12 < kanzure> for instance, a 3000 psi pipe should not be connected to something that is only rated for a maximum of 20 psi 19:12 < kanzure> (if 3000 psi is going to be coming out of it I mean) 19:12 -!- Netsplit holmes.freenode.net <-> irc.freenode.net quits: ybit, katsmeow-afk, drazak, Smari, splicer, nsh, mage2, strages, Utopiah, QuantumG, (+5 more, use /NETSPLIT to show all of them) 19:14 -!- Netsplit over, joins: splicer, fenn, drazak, samrose, kardan|, strages, katsmeow-afk, ybit, CIA-73, Smari (+5 more) 19:15 < kanzure> ah here we go 19:15 < kanzure> what was the last message that you got, smari? 19:15 < samrose> but, I am wondering how well it would work if I wanted to feed such data into evolutionary algorithms, to potentially create new mutations of processes 19:15 < samrose> I think it could work 19:15 < samrose> I realize that is not your problem 19:15 < samrose> :) 19:15 < Smari> ohh 19:15 < samrose> hahah 19:15 < kanzure> oh crap 19:15 < samrose> kanzure I saw you bumped off 19:15 < kanzure> however, 110kV is retarded 19:15 < kanzure> just say 110kV 19:15 < kanzure> there's a wrapper for GNU units in skdb at the moment 19:15 < kanzure> I wonder if I should wake up fenn 19:15 < kanzure> for instance, a 3000 psi pipe should not be connected to something that is only rated for a maximum of 20 psi 19:15 < kanzure> er 19:16 < kanzure> that was out of order 19:16 < kanzure> at the moment I'm just going to use this random interconnection method and then slowly add in ways to check whether or not there are conflicting/intersecting geometries 19:16 < Smari> kanzure, it's XML. You need tags. Implicit structure breaks XML. 19:16 < kanzure> er 19:16 < kanzure> so that was lal out of order, please excuse me 19:16 < Smari> samrose, you just opened a huge can of worms. 19:16 < kanzure> one part of this app that I am working on this week is a way to connect parts together 19:16 < samrose> Smari forget my shit! :-D 19:16 < kanzure> Smari: yeah actually that's what we're doing at ADL 19:17 < kanzure> samrose: no, no, that's what we're doing in the lab 19:17 < kanzure> we're coming up with new possible combinations of permutations of processes 19:17 < kanzure> or combinations of them 19:17 < kanzure> it's related to shape grammars and graph grammars 19:17 < kanzure> http://graphsynth.com/ 19:17 < kanzure> http://ggwiki.org/ 19:17 < Smari> yeah, it should be easy to do... 19:17 < samrose> kanzure cool! 19:17 < Smari> but you need a good database of processes.. 19:17 < kanzure> Smari: yes, that's what fenn is transcribing 19:17 < kanzure> there's a book that has a good database for about 150 19:17 < kanzure> he's transcribed about 10 of them into the YAML format 19:17 < Smari> neat.. 19:17 < kanzure> :p 19:17 < samrose> Smari, yes, I think it would not conflict at all with XML structured doc 19:18 < kanzure> so 19:18 < Smari> because if you've got the inputs and the outputs correct then permuting is merely a question of lining them up in unforseen ways. 19:18 < kanzure> it sounds like we're all still talking about the same things 19:18 < samrose> Smari are you using GNU Unit too? 19:18 < kanzure> Smari: exactly 19:18 < kanzure> there was actually this book I read the toher day 19:18 < Smari> samrose, I haven't written any code. 19:18 < kanzure> it was about purification and separation processes 19:18 < kanzure> and how to logically combine them into different sequences 19:18 < Smari> but using GNU units is sensible. 19:18 < kanzure> because you can't do IEX immediately, or GP immediately 19:19 < kanzure> Smari: well there's a python wrapper in the repo :) 19:19 < kanzure> and unit tests :) 19:19 < kanzure> units unit tests, I mean 19:19 < Smari> kanzure, of course there is! :) 19:19 < kanzure> so anyway, these separation processes are also in the repo (in inventory/) 19:19 < Smari> I got caught up yesterday in writing code for a terrain management thing.. didn't get very far. 19:19 < Smari> What's the git path for skdb again? 19:19 < kanzure> you're both welcome to start, say, poking around in the skdb codebase 19:19 < kanzure> http://adl.serveftp.org/skdb.git/ 19:19 < kanzure> the pretty web interface is over here though: 19:19 < kanzure> http://github.com/kanzure/skdb/ 19:20 < Smari> I want to clone it.. 19:20 < kanzure> clone the adl link then 19:20 < Smari> spm@cauchy:~/src/skdb$ git clone http://adl.serveftp.org/skdb.git 19:20 < Smari> Initialized empty Git repository in /home/spm/src/skdb/skdb/.git/ 19:20 < Smari> fatal: http://adl.serveftp.org/skdb.git/info/refs not found: did you run git update-server-info on the server? 19:20 < kanzure> um 19:20 < kanzure> one moment 19:21 < kanzure> yeah 19:21 < kanzure> try again 19:21 < Smari> better 19:21 < kanzure> so, samrose we haven't talked in a while 19:21 < samrose> pulling down for me too 19:21 < kanzure> so I wanted to mention djangit 19:22 < kanzure> djangit is a python wiki based on django and git 19:22 < samrose> you did tell me about djangit last week 19:22 < kanzure> we're considering using it for a frontend web interface to skdb since everyone wants a web interface 19:22 < samrose> the git repo'd django wiki 19:22 < kanzure> anybody who knows how to use git can just use git 19:22 < samrose> kanzure it is a good idea 19:22 < kanzure> but people who want to use a wiki can just use the wiki 19:22 < kanzure> I figure that smari's map could go into there easily enough as a plugin 19:22 < kanzure> one other plguin to implement is stuff like, 19:22 < samrose> not to mention all of the other stuff you could add into a django site 19:22 < samrose> if needed 19:23 < kanzure> if there's a .yaml file being displayed, then render the objects 19:23 < kanzure> by running through the wiki_repr method for each of the objects in the yaml file 19:23 < kanzure> so a wiki_repr method might say something like, display the SVG representation of the process or part 19:23 < Smari> kanzure, we should seriously be discussing merging these projects. It's silly to have them separated considering the commonality of the goals. 19:23 < kanzure> and other various pieces of metadata 19:23 < kanzure> Smari: yeah :) 19:23 < samrose> kanzure this is cool 19:23 < samrose> kanzure igraph is another possibility 19:24 < kanzure> is that like graphviz? 19:24 < samrose> http://igraph.sourceforge.net/ 19:24 < samrose> a python lib, with built in network analysis 19:24 < Smari> ohh 19:24 < samrose> kind of like graphviz, but with much more 19:24 < kanzure> check out the images here: http://adl.serveftp.org/lab/fenn/ 19:24 < samrose> anyway, not matter which lib, ideas are awesome 19:24 < kanzure> just some representations of the yaml 19:24 < kanzure> okay 19:25 < Smari> kanzure, what files are the most enlightening in the skdb dir? 19:25 < kanzure> graphviz seems kind of old. if there's something more active, that's awesome 19:25 < kanzure> Smari: skdb.py 19:25 < samrose> I see http://adl.serveftp.org/lab/fenn/taxonomy.svg 19:25 < kanzure> samrose: yeah that's a fun one 19:25 < samrose> kanzure, we are working on a little standard that would let you pipe data to all kinds of libraries, pretty much any programming lang 19:25 < kanzure> here's a smaller version of that: 19:25 < kanzure> http://adl.serveftp.org/lab/fenn/taxonomy-small.png 19:26 < samrose> http://code.google.com/p/flows-dev/ 19:26 < samrose> We could make a wrapper for djangit 19:26 < kanzure> samrose: did you ever hear about my ideas for a "semantic shell"? 19:26 < samrose> kanzure, I have not 19:26 < kanzure> it was this idea that ggetopt needs to be revived 19:26 < kanzure> and instead of just specifying arguments in the man pages,' 19:27 < kanzure> they should be specified by what sort of MIME types they are expecting 19:27 < kanzure> kind of like an improved way of doing piping 19:27 < kanzure> or ways to glue shell apps together 19:27 < samrose> huh 19:27 < kanzure> anyway, not sure if that's what you're talking about 19:27 < samrose> it is similar 19:27 < samrose> it could be useful 19:27 < samrose> actually 19:27 < samrose> especially when we start looking at connecting stuff on server with stuff on desktop computer 19:27 < kanzure> talked with the debian people about it a bit, apparently the debtags folks were originally trying to do something like that 19:27 < kanzure> but they all grew vaginas 19:27 < kanzure> and decided to just do tagging 19:28 < samrose> hahah 19:28 < bkero> What is tagging? 19:28 < kanzure> bkero: debtags? 19:28 < bkero> YUes 19:28 < bkero> Yes 19:28 < samrose> Smari, kanzure is good idea to combine efforts 19:28 < kanzure> http://debtags.alioth.debian.org/ 19:28 < samrose> should not matter which metadata you use 19:28 < kanzure> debian tag cloud: http://debtags.alioth.debian.org/cloud/ 19:29 < kanzure> anyway. it sucks. :) 19:29 < kanzure> they tag them sometimes by what types of files the programs open 19:29 < kanzure> but that is totally bullshit because you don't know how you use them to open those files 19:29 < Smari> The skdb stuff is so chaotic 19:29 < kanzure> Smari: the skdb.py file? 19:30 < Smari> Nah, it's fine. 19:30 < Smari> I mean the rest of the files in the git 19:30 < kanzure> I'd be happy to explain 19:30 < kanzure> oh, the rest is total bullshit 19:30 < kanzure> graphtheory.py for instance is something I committed 19:30 < kanzure> everything in inventory/ is also bullsit 19:30 < kanzure> *bullshit 19:30 < Smari> I think some of those files have value.. 19:30 < Smari> but what's missing is a directory structure ;) 19:31 < Smari> and a file structure :P 19:31 < kanzure> yeah :/ 19:31 < kanzure> graphtheory.py was my start at a sort of SPICES-like thing for nodal analysis of manufacturing processes 19:31 < kanzure> but also nodal analysis of different parts in the skdb repository 19:31 < kanzure> it's hard to talk about "parts that are in skdb" because that's really talking about a repo that skdb accesses (eventually), not the skdb.git repo :p 19:31 < kanzure> recursive terminology.. 19:31 < kanzure> any way to fix this? 19:32 < samrose> what is the intended structure? 19:32 < samrose> if any? 19:32 < kanzure> samrose: eventually we want to do something like "apt-get install microwave-machine" 19:32 < kanzure> so, there is going to be an "skdb repository" of sorts 19:33 < kanzure> which doesn't contain the skdb code, but instead contains all of these machine tools and so on 19:33 < kanzure> which is the data that skdb plays with 19:33 < samrose> yes, sure 19:33 < kanzure> so I guess that could be data/ or something, 19:33 < kanzure> but screw.yaml is the only example at the moment (ok, there's another in the works, but ..) 19:33 < samrose> yes, it probably would work without any strucutre 19:33 < kanzure> it just needs a better name 19:33 < kanzure> so I guess I could say: 19:33 < kanzure> skdb.git to refer to the git dev repo 19:33 < kanzure> and skdb-repo for "stuff that skdb plays with" 19:34 < samrose> so, the only reason to impose a structure is so that people know where to look for what 19:34 < kanzure> or skdb-data, even better 19:34 < kanzure> sure 19:34 < kanzure> skdb.py will probably be moved into core/ eventually 19:34 < kanzure> or something not insane 19:35 < kanzure> oh, btw 19:35 < kanzure> today I found out where the *real* opencascade documentation is 19:35 < samrose> The code we are working on at http://code.google.com/p/flows-dev/ could work as a way to distrubute all of the pieces of the db across multiple machines 19:35 < kanzure> so I uploaded it: http://adl.serveftp.org/lab/opencascade/ 19:35 < samrose> cool 19:35 < kanzure> samrose: yeah that would be nice. I was originally thinking of some cron jobs and a mirror system. 19:36 < kanzure> I actually think there are some open source mirror infrastructures already written 19:36 < kanzure> but I don't know about hem 19:36 < kanzure> *them 19:36 < samrose> We have very simple wrappers 19:36 < Smari> gah, I forgot how one reverts to the repository status in git 19:36 < kanzure> Smari: git rebase --hard? 19:36 < Smari> accidentally rm'ed a few files 19:36 < kanzure> git revert head~1 ? 19:36 < samrose> you mean revert to an earlier revision? 19:36 < samrose> kanzure has it I think 19:37 < Smari> spm@cauchy:~/www/tangiblebit.com$ git revert master 19:37 < Smari> fatal: Dirty index: cannot revert 19:37 < kanzure> try git rebase --hard 19:37 < Smari> it gives me a usage help thingie 19:38 < samrose> try upstream 19:38 < kanzure> maybe it was 'git reset --hard' but IIRC it really is 'rebase' 19:38 < Smari> reset --hard worked 19:38 < Smari> thx 19:39 < kanzure> never ever do that when you have made changes 19:39 < Smari> nope :) 19:40 < kanzure> so I guess it requires some cleanup at the moment 19:40 < Smari> okay 19:41 < Smari> sources is now updated quite a bit 19:41 < kanzure> hm? 19:41 < kanzure> notes on how to get OpenCASCADE installed and working: http://adl.serveftp.org/dokuwiki/occ 19:42 < kanzure> notes on how to get pythonOCC installed and working: http://adl.serveftp.org/dokuwiki/pythonocc 19:42 < kanzure> notes on how to get HeeksCAD installed and working: http://adl.serveftp.org/dokuwiki/heekscad 19:42 < kanzure> (I've also been wrestling with HeeksPython, but there are some development issues with it. All the Heeks people do development on windows for some reason.) 19:43 < Smari> HeeksCAD is fairly good 19:43 < samrose> first time hearing of it 19:44 < kanzure> open source CAD app that uses wxWidgets and OpenCASCADE 19:44 < kanzure> HeeksPython adds a python interpreter to the environment (it's just a plugin) 19:44 < kanzure> it has a much simpler API than pythonOCC, but it's also much more limited 19:47 < kanzure> samrose: so, I'm going on a trip soon up to LA 19:47 < kanzure> things aren't really solid yet, but basically my job might become to make sure that we're killing the most birds with the fewest stones 19:47 < kanzure> when it comes to all of these projects 19:48 < samrose> kanzure, yes it can get crazy when you have many projects going at once 19:48 < kanzure> I've been trying to inform those who don't otherwise know that skdb and related projects are kind of the backend "toolchain" for many of these initiatives 19:48 < samrose> I don't know if I am familiar with all of your ventures, but of course I recall skdb 19:48 < kanzure> so if all goes well, I may have a patron supporting these initiatives and my involvement in (all of) them 19:48 < samrose> awesome 19:49 < samrose> there are people out here in midwest interested in this stuff too 19:49 < kanzure> skdb, pink army, diybio, diytranshumanism, Team FREDNET (F/OSS Google Lunar X Prize team), open source medicine, fablabs, techshops, open source manufacturing, automated design lab work, bioreactor / algae work, 19:49 < samrose> diybio yes 19:49 < kanzure> yeah the diybio people might be understanding things now 19:49 < kanzure> not sure yet, things are kind of turning around 19:50 < samrose> Marcin seems to think that bioreactor is not worth any time 19:50 < kanzure> pink army is the anti-cancer therapeutics personalized medicine open source hardware startup 19:50 < samrose> wow 19:50 < samrose> that's a fuckin crazy start up 19:50 < samrose> hats off to you 19:50 < kanzure> samrose: the project that I have been on isn't going anywhere fast. it's DARPA funded, no genetic engineering allowed, and frankly the filtration device we have designed sucks 19:51 < kanzure> er, the project re: bioreactors 19:51 < samrose> ah yes 19:51 < kanzure> re algae more than bioreactors actually 19:51 < samrose> ok 19:51 < kanzure> basically the entire project is making a bottleneck out of the filter device 19:51 < kanzure> anyway, skdb can also sort of become a startup in the sense that kits could be sold to people who don't want to follow instructions 19:51 < samrose> there is a project going up here in Michigan to create some open source software for automated design 19:51 < kanzure> oh? 19:52 < kanzure> hopefully it's better than the lab fenn and I are working in 19:52 < kanzure> the lab isn't really interested in skdb, although we're slowly changing that 19:52 < kanzure> the lab focuses on "graph grammars" 19:52 < kanzure> but it's more of a computer science thing than engineering thing 19:52 < kanzure> maybe you know some people who are doing some serious automated design? 19:52 < samrose> most of them are from complexity science backgrounds 19:52 < samrose> running genetic algorithms on designs 19:53 < kanzure> yeah that's what the lab does 19:53 < kanzure> except we do more than genetic algorithms 19:53 < samrose> yeah? 19:53 < kanzure> we do a lot of simulated annealing, breadth first searches, depth first searches, topological sort-and-prune 19:53 < kanzure> and some GAs every now and then 19:53 < samrose> hmmm interesting 19:53 < kanzure> and then I spit the output into graphviz :p 19:53 < kanzure> but the output is just nodes connected to other nodes 19:53 < samrose> yours is more informational 19:53 < kanzure> there's a student that I worked with who was doing automated gear train design 19:54 < kanzure> his was using this graph grammar method 19:54 < kanzure> but actually does something 19:54 < kanzure> you give it an input xyz coord and a certain torque, and a requested output torque at another location 19:54 < kanzure> and basically it uses gears and shafts from a McMaster-Carr catalog 19:54 < kanzure> and makes a design that satisfies the requirements to within 5% or something 19:54 < kanzure> the professor and albert had a lot of with it, they made a class of mechanical engineering students do the same design problems as the program 19:55 < kanzure> and found that on average it took the students 12 hours to come up with a 30% efficient solution 19:55 < samrose> yes 19:55 < kanzure> whereas it took about 2 minutes for the design method to do its job 19:55 < samrose> yes, this is similar to results others are talking about 19:55 < samrose> different methods 19:55 < kanzure> right, 19:55 < samrose> but computers compute faster 19:55 < kanzure> graphsynth is this sort of software suite for including different algorithms 19:55 < kanzure> but it's kind of written in .NET and sucks 19:56 < Smari> This is all well and good, but it's two hours past my bedtime and I'm very happy sitting here and debugging xmlrpc stuff 19:56 < kanzure> and the professor isn't really interested in rushing to GPL it 19:56 < samrose> I see http://www.me.utexas.edu/~adl/graphsynth/ 19:56 < kanzure> samrose: http://www.graphsynth.com/ 19:56 < samrose> later Smari 19:56 < Smari> later? 19:56 < kanzure> yeah. don't be too interested in it. 19:56 < Smari> Nah! 19:56 < samrose> oh, ok 19:56 < samrose> thought you meant you were leaving 19:56 < fenn> gee you sure can get talking when you put your mind to it 19:57 < kanzure> there's not a lot of "engineering" going on in the software really 19:57 < kanzure> one thing that I am writing this week is a part compatibility checking method 19:57 < samrose> will be back tomorrow, thanks for info kanzure. I will fill you in as I learn more 19:57 < kanzure> to see whether or not two parts fit together 19:57 < kanzure> which is kind of important for automated design work (don't know if two things actually fit) 19:57 < kanzure> samrose: are you leaving too? 19:58 < kanzure> so I'm going to be doing some geometrical tests firsts like volume difference and volume interference etc. and then eventually some units/ranges for whether or not there exists some capatibility 20:02 < kanzure> "together, we hate everything" 20:04 < Smari> I have a great tool for you guys as soon as I can remember its name. 20:05 < Smari> http://ubietylab.net/ubigraph/ ! 20:07 < kanzure> oh, for dynamic graphs. nice. 20:07 < Smari> http://ubietylab.net.s3.amazonaws.com/DemoReel.mov 20:08 < fenn> fwiw i recently had the epiphany that "process" is the wrong word to describe things you do in industry to achieve an effect 20:08 < fenn> perhaps "procedure" or "method" is better; too bad those are already computer words 20:08 < fenn> because a process could happen whether we want it to or not 20:09 < fenn> whereas these things we describe have definite parameters and sequences of actions 20:09 < fenn> so like a bolt fatiguing with repeated stress cycles, that's a process 20:10 < fenn> at the basic level recipes all involve a process of some sort, which i've tried to sort of capture with the 'mechanism:' field (poorly) 20:10 < kanzure> and the svg diagrams 20:11 < Smari> using computer terms is fine with me as long as you don't collide the meanings. 20:11 < fenn> yeah the diagrams were mostly because i was bored and didnt know what to do, and sick of boxes + arrows crap 20:12 < fenn> Smari: i'm not really interested in some proprietary graph visualization software 20:12 < Smari> fenn, I agree that it sucks that it's proprietary.. 20:12 < fenn> it would be nice if GTK somehow had a graph widget 20:13 < fenn> like the tree widget but better 20:13 < Smari> fenn, but it's still free as in free beer and it's by far the best graph visualization tool I've ever seen. 20:13 -!- samrose [n=samrose@c-24-11-214-181.hsd1.mi.comcast.net] has quit [Read error: 110 (Connection timed out)] 20:13 < fenn> curious math from ping: 91596 packets transmitted, 91470 received, 0% packet loss 20:14 < fenn> must round down 20:14 < kanzure> is there an "acceptable" amount of packet loss that ping intentionally fudges? 20:15 < kanzure> 126 packets per 91596? meh 20:17 < fenn> btw smari "shored out" == "puttered out" 20:17 < fenn> er, "petered out" i mean 20:17 < Smari> fenn, its just rounding down. 20:17 < fenn> damn i thought i knew english "\ 20:18 < Smari> me too 20:18 < Smari> :P 20:23 < fenn> fwiw i think tangiblebit is cooler than skdb 20:23 < fenn> i mean the name 20:23 < fenn> skdb just makes eyes glaze over 20:24 < fenn> i mean we're all trying to make a matter compiler, right? 20:24 < kanzure> separate pieces of the puzzle. 20:25 < Smari> I agree with re name. 20:25 < Smari> 'skdb' doesn't tell me anything... it just makes me want to go do something else. 20:29 < ybit> fenn: what program did you use again to output the svg? 20:30 < ybit> oh, i think you used graphviz 20:30 < ybit> i was thinking of something else though 20:35 < fenn> ybit: taxonomy-graph.py in the skdb directory.. 20:36 < fenn> dot -Tsvg 20:36 < fenn> how the hell did i not run across igraph in my search for graph visualization tools? 20:40 < fenn> also btw i added a bunch of separation processes to taxonomy.yaml 20:40 * fenn mumbles something about gitweb still not working 20:46 < ybit> http://ggwiki.org is down? 20:46 < fenn> i didnt do it 20:47 < ybit> GNU Unit, link? 20:48 < fenn> http://www.gnu.org/software/units/ 20:48 < ybit> ah, GNU Unit*s* 20:48 < fenn> i'm still not sure it's the best choice long-term.. but all the symbolic math stuff i've seen is horrible with manipulating units 20:49 < ybit> btw, i don't see any responses if there are any, i'm just typing questions i may have while reading the log 20:49 < ybit> just in case there is anyone actually responding to this 20:49 < ybit> ..atm 20:49 < fenn> well fuck you too 20:49 < fenn> .. atm 20:54 < ybit> the flows project on code.google.com that samrose linked to is highly similar to what metacurrency uses 20:54 < ybit> they are all about 'flows' 20:56 < kanzure> fenn: I won't be going in tomorrow at the regular time. 20:56 < fenn> bleh finally: http://adl.serveftp.org/gitweb.cgi?p=skdb.git;a=blob;f=taxonomy.yaml 20:57 < kanzure> where's all the CSS? 20:57 < fenn> picky picky 20:57 < kanzure> I don't like seeing broken CSS 20:57 < kanzure> either do none of it or all of it 20:58 < fenn> you know i had a good .css for gitweb on flaminggaypurpledinosaur 20:59 < fenn> maybe i should just force my gray on gray color scheme on the rest of the world 21:01 < ybit> uh, adl.serveftp.org is giving 403 forbidden :\ 21:01 < fenn> the link i just pasted or something else? 21:01 < fenn> oh 21:02 < fenn> kanzure did you break it? 21:02 < kanzure> didn't touch it 21:02 < genehacker> hehehheheheheh 21:04 < fenn> ah, problem solved: Options +ExecCGI instead of Options ExecCGI 21:07 < ybit> kanzure, you've mentioned pink army i don't how many times and everytime i do a search, i always come across two sites: one with nothing on the homepage www.thepinkarmy.com and some breast cancer fund rasing group. maybe the first is link is what you are referring to? 21:08 < ybit> oh, and give an explanation @ 19:47 after i type that out 21:09 < fenn> ybit: are you reading replies yet or not? 21:09 < Smari> XMLRPC stuff added to Sources. 21:10 < fenn> there ought to be unit tests for websites 21:10 < CIA-73> skdb: fenn master * r14494f2 / taxonomy.yaml : remove scratch list - http://bit.ly/CJb5o 21:10 < CIA-73> skdb: fenn master * r23d5f09 / taxonomy.yaml : now it's mixed source data. yummy - http://bit.ly/D1PXy 21:10 < CIA-73> skdb: fenn master * r28bf021 / tags.yaml : i guess this file is for testing custom tags, so make them custom tags eh - http://bit.ly/LG31h 21:10 < CIA-73> skdb: kanzure master * rfac8797 / (tags.yaml taxonomy.yaml): Merge branch 'master' of ssh://bryan@adl.serveftp.org/var/www/skdb - http://bit.ly/wHWCE 21:11 < kanzure> ybit: http://pinkarmy.org/ 21:11 < ybit> re: skdb as a startup by kits being sold: kind of like the make magazine's store i would assume, it's really not a bad business model: "look at this cool thing you can make yourself [read:customization/diy you marketers]" "..and you can buy the items needed to make it at our store or just buy several already made for you" 21:12 < kanzure> what I really want to do is cygnus except on roids 21:13 < fenn> yeah man, asteroids with hemirrhoids 21:13 < fenn> gleaming globs of gallium 21:13 < kanzure> steroids 21:14 < CIA-73> skdb: kanzure master * re049fd2 / (10 files in 2 dirs): added pymates, moved code around - http://bit.ly/SmsHt 21:17 < kanzure> in skdb/pymates/pymates.py I am saying "import geom" 21:17 < kanzure> there's a skdb/pymates/geom/ 21:20 -!- strages [n=strages@c-68-62-216-5.hsd1.al.comcast.net] has quit [] 21:21 < fenn> "click on a link; i shouldnt ever see a 404" this shouldnt be so hard right? 21:21 < kanzure> what's wrong now? 21:23 < ybit> yay, through reading replies 21:23 < ybit> fenn: yes i am done 21:25 < ybit> was an interesting read 21:26 < ybit> the log that is 21:27 < ybit> only 30 more apps left to compile from 'emerge emacs vim' 21:27 < ybit> 30 out of 200 21:27 < ybit> think xorg-x11 was compiled along the way 21:28 * ybit is going to get some fresh air 21:28 < ybit> don't think it's healthy to sit through such a long compilation process 21:29 < kanzure> bah! 21:29 < kanzure> you kids and your fresh air 21:29 < ybit> :P 21:29 < kanzure> back in my day we had smoke 21:29 < kanzure> anbd we were lucky if we got it 21:29 < ybit> :D 21:29 < kanzure> not the good kind of second hand smoke, I'm talking the bad kind 21:29 < kanzure> *talking 21:29 < fenn> nothing wrong, just muttering about unit tests for websites that should be easy enough to implement 21:33 < genehacker> they did again 21:34 < kanzure> they deid who? 21:34 < genehacker> they 21:34 < genehacker> err he did 21:34 < genehacker> http://nextbigfuture.com/ 21:34 < genehacker> finally published it 21:37 < genehacker> wonder if AB matter would be really heavy and impractical 21:38 < genehacker> checked out some of the stuff on his levitator thing 21:38 < genehacker> and it seems like it some of the materials he suggested weren't good enough for it 21:38 < fenn> please shut up about AB matter until you have some idea about how one might possibly go about making it 21:39 < genehacker> it's in the paper 21:39 < fenn> and even then, why "AB matter" 21:39 < fenn> no he just says "you string together protons and neutrons" 21:41 < fenn> fwiw bolonkin didn't invent picotech or femtotech either 21:41 < genehacker> faster AB matter production rates require AB matter 21:41 < kanzure> http://numpy.scipy.org/ 21:41 < fenn> orgone accumulation is proportional to the concentration of orgone 21:42 < genehacker> Some offered technologies for producing: AB-Matter. 21:42 < genehacker> One method of producing AB-Matter may use the 21:42 < genehacker> technology reminiscent of computer chips (Fig. 4). One 21:42 < genehacker> side of closed box 1 is evaporation mask 2. In the other 21:42 < genehacker> size are located the sources of neutrons, charged 21:42 < genehacker> nuclear particles (protons, charged nuclei and their 21:42 < genehacker> connections) and electrons. Sources (guns) of charged 21:42 < genehacker> particles have accelerators of particles and control their 21:42 < genehacker> energy and direction. They concentrate (focus) 21:42 < genehacker> particles, send particles (in beam form) to needed points 21:42 < genehacker> with needed energy for overcoming the Coulomb 21:42 < genehacker> barrier. The needed neutrons are received also from 21:42 < genehacker> nuclear reactions and reflected by the containing walls. 21:42 < genehacker> oops 21:42 < genehacker> just read the paper 21:43 < genehacker> if not just for the lulz 21:45 < genehacker> huh? 21:45 < genehacker> is my room mate smoking? 21:46 < genehacker> ugh 21:47 < kanzure> er. in my __init__() there are potentially many parameters (named). but the class inherits from another class. how can I pass some of the parameters to the parent class's initiator, and then make this initaitor just extend it? 21:47 -!- strages [n=strages@c-68-62-216-5.hsd1.al.comcast.net] has joined #hplusroadmap 21:54 * ybit just traversed roughly 1 mile and is now about to croak over dead. it was nice knowing you all 21:54 * ybit needs a krispy kreme donut 21:55 < fenn> kanzure: parent.__init__() 21:55 < kanzure> parent is special? 21:55 < fenn> no 21:55 < kanzure> is parent like self just not the self? 21:55 < fenn> i think there's some keyword __super__ but i'm not sure what it does 21:56 < kanzure> okay. I'm familiar with the super. 21:56 < fenn> or maybe it's super(foo) 21:58 < CIA-73> skdb: kanzure master * r7cc204e / (pymates/geom.py pymates/primitives.py pymates/pymates.py): primitive primitives and geometries for part mating - http://bit.ly/3F5bmW 21:59 < fenn> since you're specifying the parent classes in the class definition i think actually using the parent class name is not a bad thing 21:59 < fenn> if you inherit from two classes, which one is the super? 22:00 < kanzure> so if I inherit from foo.bar, then I could say foo.bar(stuff) in place of super(stuff)? 22:01 < kanzure> that doesn't seem to work 22:02 < fenn> sure why not 22:02 < fenn> foo.bar.__init__(stuff) 22:03 < fenn> foo.bar(stuff) would make a foo.bar instance 22:03 < kanzure> and all of the attributes will apply to the current object that has that super/parent? 22:03 < fenn> uh, i'm not sure classes can have .'s in them though 22:04 < fenn> guess they can 22:04 < kanzure> okay it works 22:04 < kanzure> it's actually foo.bar.__init__(self,stuff) 22:04 < fenn> init is not a constructor, it's an initializer 22:04 < kanzure> hm 22:04 < kanzure> there's a difference apparently 22:04 * fenn shrugs 22:05 < CIA-73> skdb: kanzure master * r3b4861b / pymates/geom.py : fixed geom.py - http://bit.ly/PFYXo 22:06 < kanzure> blah 22:06 < CIA-73> skdb: kanzure master * rfee191a / pymates/geom.py : ok, really fixed it this time - http://bit.ly/DLynP 22:06 < kanzure> better 22:17 < CIA-73> skdb: kanzure master * rda5d23a / pymates/tests.py : basic test framework for pymates - http://bit.ly/was6k 22:41 < Smari> http://www-vrl.umich.edu/sel_prj/lathe/index.html 22:42 < ybit> harry potter brought in $62 million in one night 22:42 < ybit> [OT] 22:45 < genehacker> smari, I used a lathe today 22:45 < ybit> -_- 22:45 < genehacker> ybit, seed MOAR 22:45 < ybit> sorry, just jealous 22:45 < genehacker> of harry potter? 22:46 < genehacker> if so then LOL PIRACY 22:46 < ybit> no no, that you were able to use an interesting tool that i'd like to own 22:46 < ybit> well, it's not highly interesting, but i still want it 22:47 < ybit> i had something to do with harry potter this year 22:47 < ybit> i wanted to do something stupid fun for a charity, so i put together a charity event 22:48 < ybit> let's see... 22:48 < ybit> google: heath matlock florala harry potter 22:48 < ybit> first article shows the event 22:48 < ybit> mentions me 'heath matlock' 22:50 < ybit> next stupid fun thing to do: 'laser graffati' on buildings downtown during some local misc. event 22:50 < ybit> would link to the article but i don't know how to copy/paste from screen in a tty 23:12 < kanzure> screen was made for that :p 23:15 -!- splicer [n=patrik@h189n3c1o261.bredband.skanova.com] has quit ["Ex-Chat"] 23:32 -!- genehacker [n=noko@cpe-67-9-157-136.austin.res.rr.com] has quit [Read error: 60 (Operation timed out)] 23:43 < ybit> well, that's simple enough 23:43 < ybit> never really looked into it 23:43 < ybit> just not sure how to copy/paste from within links 23:43 < ybit> splitting windows and monitoring windows is useful 23:50 < kanzure> what I don't like about OOP is that no matter how many classes I write, it doesn't feel like progress at all 23:53 -!- genehacker [n=noko@67.9.157.136] has joined #hplusroadmap 23:53 < genehacker> kanzure, got a question 23:54 < genehacker> does that CD protein purification thing purify a solution of multiple proteins or just one protein from solution? 23:54 < genehacker> flow control can be quite a problem in microfluidics 23:55 < genehacker> saw a google ad about this company marketing a $$$$PROPRIETARY$$$$ control system for microfluidics 23:55 < genehacker> apparently you get some inaccuracy from the PDMS or flexible connector tubing deforming 23:56 < genehacker> though if we do those stryene style microfluidics this shouldn't be problem