--- Log opened Thu Dec 13 00:00:54 2012 00:02 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has joined ##hplusroadmap 00:47 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has quit [Read error: Connection reset by peer] 00:48 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 00:56 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has quit [Ping timeout: 255 seconds] 00:56 -!- juri_ [juri@funkykitty.net] has quit [Ping timeout: 265 seconds] 00:57 -!- juri_ [juri@funkykitty.net] has joined ##hplusroadmap 01:02 -!- lichen [~lichen@c-24-21-206-64.hsd1.or.comcast.net] has joined ##hplusroadmap 01:12 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has joined ##hplusroadmap 01:16 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has quit [Read error: Connection reset by peer] 01:32 < joshcryer> Basalt makes a nice concrete replacement. 01:33 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has joined ##hplusroadmap 01:34 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has joined ##hplusroadmap 01:35 -!- ParahSail1n [~eg@50-194-178-148-static.hfc.comcastbusiness.net] has quit [Read error: Connection reset by peer] 01:36 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has quit [Read error: Connection reset by peer] 01:37 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has quit [Ping timeout: 245 seconds] 01:42 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 01:52 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has joined ##hplusroadmap 01:53 -!- Juul [~Juul@50-0-146-204.dsl.dynamic.sonic.net] has quit [Client Quit] 02:02 -!- delinquentme [~asdfasdf@c-71-236-101-39.hsd1.pa.comcast.net] has joined ##hplusroadmap 02:31 -!- augur_ [~augur@208.58.5.87] has joined ##hplusroadmap 02:33 -!- superkuh [~superkuh@unaffiliated/superkuh] has quit [Read error: Connection reset by peer] 02:33 -!- augur [~augur@208.58.5.87] has quit [Ping timeout: 244 seconds] 02:39 -!- joshcryer [g@unaffiliated/joshcryer] has quit [Quit: sleep] 02:42 -!- superkuh [~superkuh@unaffiliated/superkuh] has joined ##hplusroadmap 02:53 < delinquentme> <3 MORNING 03:27 -!- chris_99 [~chris_99@unaffiliated/chris-99/x-3062929] has joined ##hplusroadmap 03:30 -!- phryk [~phryk@static.39.216.9.176.clients.your-server.de] has quit [Ping timeout: 244 seconds] 03:32 -!- phryk [~phryk@static.39.216.9.176.clients.your-server.de] has joined ##hplusroadmap 03:48 -!- delinquentme [~asdfasdf@c-71-236-101-39.hsd1.pa.comcast.net] has quit [Quit: Leaving] 04:18 -!- Simurg [~Shehrazad@78.174.49.238] has joined ##hplusroadmap 04:18 -!- Simurg [~Shehrazad@78.174.49.238] has quit [Changing host] 04:18 -!- Simurg [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 04:20 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has quit [Ping timeout: 245 seconds] 04:51 -!- Simurg is now known as ElixirVitae 05:04 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has quit [Ping timeout: 260 seconds] 05:30 -!- ThomasEgi [~thomas@gw-ko-kostr2.inka-online.net] has joined ##hplusroadmap 05:30 -!- ThomasEgi [~thomas@gw-ko-kostr2.inka-online.net] has quit [Changing host] 05:30 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has joined ##hplusroadmap 05:41 -!- devrandom [~devrandom@gateway/tor-sasl/niftyzero1] has quit [Remote host closed the connection] 06:27 -!- aristarchus [~aristarch@unaffiliated/aristarchus] has joined ##hplusroadmap 06:31 -!- aristarchus [~aristarch@unaffiliated/aristarchus] has quit [Quit: Leaving] 06:56 -!- panax [panax@131.247.116.22] has quit [Read error: Connection reset by peer] 06:58 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 07:02 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 244 seconds] 07:05 <@kanzure> where did the fake google scholar papers guy go? he had been recompiling latex and inserting fake references. 07:05 <@kanzure> and his results don't seem to show up anymore? 07:06 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 07:09 -!- devrandom [~devrandom@gateway/tor-sasl/niftyzero1] has joined ##hplusroadmap 07:13 -!- jmil [~jmil@hive76/member/jmil] has joined ##hplusroadmap 07:22 -!- AdrianG [~dextro@unaffiliated/amphetamine] has quit [Ping timeout: 260 seconds] 07:22 -!- Urchin[Emacs] [~user@unaffiliated/urchin] has joined ##hplusroadmap 07:30 -!- emancipate [~emancipat@50.14.1.36] has joined ##hplusroadmap 07:30 -!- Helleshin [~talinck@cpe-174-101-208-182.cinci.res.rr.com] has quit [Ping timeout: 252 seconds] 08:02 <@kanzure> http://www.rsc.org/AboutUs/News/PressReleases/2012/RSC-acquires-Merck-Index.asp 08:02 <@kanzure> "The famous "bible" of chemistry, The Merck Index, is to join the highly acclaimed publishing portfolio of the Royal Society of Chemistry." 09:02 <@fenn> i thought the "bible of chemistry" was the crc handbook 09:02 <@fenn> perhaps the merck index is the new testament 09:03 <@kanzure> http://en.wikipedia.org/wiki/Merck_Index 09:03 <@kanzure> "The Merck Index is also available by subscription in an electronic searchable form, commonly carried by research libraries, as well as in a web-accessible form." 09:03 <@kanzure> oh so now there's an "electronic searchable form" and a "web-accessible form"... wtf. 09:04 <@kanzure> "It contains more than 10,000 monographs, 27 supplemental tables, 450 Organic Name Reactions, and now includes a companion CD!" oh boy a CD?! 09:08 <@fenn> well let's see what's on it http://thepiratebay.se/torrent/7520594/The_Merck_Index_13.1_CD 09:11 < Mariu> CD lol 09:28 <@fenn> hey man 693 MB is a lot of tables 09:29 <@fenn> but i bet it's poorly scanned pdf's of the book 09:31 -!- augur_ [~augur@208.58.5.87] has quit [Remote host closed the connection] 09:31 < ArmilusDajjal> now includes a compainon cd 09:34 -!- EnLilaSko [~Nattzor@unaffiliated/enlilasko] has joined ##hplusroadmap 09:48 <@fenn> i wonder where one can get all this data without having to OCR some stupid scanned in tables 09:50 <@fenn> even if it's in text, it's still just a PDF, there's no structure to the data, only layout 09:50 <@kanzure> these databases are available through paywalls at universities 09:50 <@kanzure> there are many proprietary databases just sitting there with all this info 09:54 <@fenn> what is the interface like? can you do real API queries or is it just some web form? 09:54 <@kanzure> web forms 10:04 -!- delinquentme [~asdfasdf@c-71-236-101-39.hsd1.pa.comcast.net] has joined ##hplusroadmap 10:17 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has joined ##hplusroadmap 10:33 -!- Mariu [Jimmy98@89.41.57.33] has quit [Ping timeout: 244 seconds] 10:37 -!- Mariu [Jimmy98@89.41.57.33] has joined ##hplusroadmap 10:57 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has quit [Remote host closed the connection] 11:01 -!- Jaakko96 [~Jaakko@94-194-89-130.zone8.bethere.co.uk] has joined ##hplusroadmap 11:02 -!- Guest81827 [~quassel@64.31.59.70] has quit [Ping timeout: 250 seconds] 11:03 -!- Charlie [~quassel@64.31.59.70] has joined ##hplusroadmap 11:03 -!- Charlie is now known as Guest55486 11:08 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has joined ##hplusroadmap 11:16 < archels> so we've all seen this 1-pixel contact lense display, right? http://bit.ly/VpH2gL 11:17 < archels> how could you ever actually focus your eye to that? 11:17 < chris_99> oooh 11:17 < chris_99> funky 11:18 -!- kirka [~Kirka@95-161-252-108.broadband.spb.TiERA.org] has joined ##hplusroadmap 11:18 < kirka> Hi 11:18 < chris_99> yo. The resolution of that seems quite nice 11:19 < kirka> Are you Chris Phoenix? 11:19 < chris_99> alas not 11:20 < kirka> Ah, ok 11:20 < archels> chris_99: but how could that ever work without any intervening optics? 11:20 < chris_99> yeah i'm not sure about that either, i see what you mean about focussing 11:21 -!- Jaakko96 [~Jaakko@94-194-89-130.zone8.bethere.co.uk] has quit [Quit: Nettalk6 - www.ntalk.de] 11:25 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has quit [Ping timeout: 245 seconds] 11:26 < delinquentme> Has anyone sat down and taken inventory of the qualities they look for in someone who manages them? 11:26 < delinquentme> specifically the relationship to power versus passion? 11:26 <@kanzure> what do you mean versus 11:26 <@kanzure> what 11:26 < delinquentme> like would you prefer one over another? 11:27 <@kanzure> neither of those two things matter to me 11:27 < delinquentme> like I'm okay working in my current spot bc this person clearly has more power than my previous employer 11:27 < delinquentme> ( at least I think ) 11:27 < delinquentme> but the other dude didn't even have passion 11:27 <@kanzure> who cares how much he passion he claims to have 11:27 <@kanzure> *much passion 11:27 <@kanzure> he can claim zero or a million and still be wrong either way 11:28 <@kanzure> have you read the valve management handbook? 11:29 < kirka> kanzure Hi, I have digged old nanotech CADS (Will Ware's NanoCAD and Crystal Clear) 11:29 < archels> ftp://ftp.turingbirds.com/misc/Valve%20Handbook%20for%20New%20Employees.pdf 11:29 < kirka> Will Ware was on the right track with Common lisp and Scheme. 11:29 <@kanzure> kirka: i already told you weeks ago that chris_99 is not chris phoenix.. 11:29 -!- ElixirVitae [~Shehrazad@78.168.153.210] has joined ##hplusroadmap 11:29 -!- ElixirVitae [~Shehrazad@78.168.153.210] has quit [Changing host] 11:29 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 11:30 < kirka> kanzure I wanted to be sure, heh (and maybe I misunderstood you a little then) 11:32 < delinquentme> kanzure, no but I value passion highly so I think I might already disagree 11:32 <@kanzure> passion can be faked, why would you value that? 11:32 <@kanzure> how about valuing results 11:33 < delinquentme> kanzure, perhaps 11:33 < delinquentme> and results are unquestionable 11:33 <@kanzure> they are? 11:34 < kirka> kanzure Don't you know any forum on MNT? (I have searched but haven't found anything. Seems that some people from sci.nanotech would like to have such a forum) 11:35 <@kanzure> kirka: eugen leitl keeps some nanotech people around on his transhuman-tech mailing list 11:35 < kirka> Thanks, I'll look 11:35 <@kanzure> mems-talk does slightly-larger-than nano stuff. 11:35 <@kanzure> and nanoengineer-dev is the only one with software developers 11:35 < kirka> It's strange that there isn't much technical discussion on MNT on the net. 11:36 <@kanzure> that's because they keep publishing their discussions in proprietary academic journals that nobody has access to 11:36 < kirka> Yes, I don't like paywalls 11:36 < kirka> Actually, there is one good paper 11:36 < kirka> http://phys.org/news/2012-11-artificial-ion-channels-dna-origami.html 11:37 < kirka> I think that's breakthrough 11:38 < archels> http://synapses.clm.utexas.edu/learn/visualize/serial.stm 11:38 < archels> man, we were this far in 2002? 11:38 < kirka> kanzure But IMM, Freitas & co publish their papers freely. I think there must be another reason for lack of interest in MNT. 11:38 < kirka> Maybe people are just tired 11:38 <@kanzure> freitas is not evidence of a lack of interest 11:39 < kirka> Yes, quite the opposite 11:39 < kirka> But he, Merkle and people affilated with anofactory collaboration is, maybe, 20 or 30 men 11:43 < kirka> Today's scientific community seems largely ignorant of mechanosythesis 11:43 < kirka> I have asked some physics students 11:43 < kirka> And even two students that study "nanotechnology" 11:44 < kirka> Nobody haven't heard about mechanosynthesis 11:44 < kirka> And it's difficult for them to understand the concepts' utility 11:46 < kirka> My sample could be small, something like ten people 11:46 < kirka> But anyway. 11:46 <@fenn> archels: the contact has a microlens array built in to focus (demagnify) the LED 11:47 -!- emancipate is now known as emancipated 11:47 < kirka> Does anybody have acces to this paper? http://dx.doi.org/10.1126/science.1225624 11:47 < kirka> It's cool 11:48 <@fenn> lols "some people from sci.nanotech would like to have a MNT forum" 11:48 <@fenn> that is just so sad 11:48 < kirka> fenn Yes 11:48 < kirka> sci.nanotech dies 11:48 < kirka> ANd what's more frightening the very idea of MNT seems dying 11:48 <@fenn> it's a conspiracy! time lords from the ulterior dimension have reorchestrated congress!!1 11:49 < kirka> You know, I have talked to students and they haven't heard about it 11:49 < kirka> They have heard about "nanotechnology", maybe "nanobots" (what a bad word) 11:50 <@fenn> every time i talk to anyone either they gush uncontrollably or it's all eye-rolling 'been there done that, so over it' 11:50 <@fenn> but really the field was never given a chance 11:51 < kirka> Well, I have hope and I can help a little. With software for example. 11:51 < kirka> Actually, I think there should be a forum, devoted to MNT. 11:52 <@fenn> what i think really needs to happen is for a large company such as IBM to throw some serious investment into studying the mechanosynthetic reactions themselves 11:52 -!- NCC-A2 [Jimmy98@89.41.57.33] has joined ##hplusroadmap 11:52 < kirka> Yes, I agree with you 11:52 -!- NCC-A2 [Jimmy98@89.41.57.33] has quit [Client Quit] 11:52 <@fenn> sure it will all be patent encumbered for eternity, but at least it would happen 11:52 <@fenn> and if they have all the patents in one place it's not a minefield 11:53 < kirka> This grant is already good: http://gow.epsrc.ac.uk/NGBOViewGrant.aspx?GrantRef=EP/G007837/1 11:53 <@fenn> wouldn't it suck if humanity knew how to place carbon and remove the hydrogen groups but no one company were legally allowed to do both reactions? 11:53 < kirka> And Zyvex makes progress 11:53 <@fenn> zyvex is still functioning? 11:54 < kirka> >no one company were legally allowed 11:54 < kirka> That's uncontrollable on global scale 11:54 < kirka> Yes 11:55 <@fenn> in that grant, why is room-temperature capability important? 11:56 < kirka> I don't knoe 11:56 < kirka> *know 11:56 < kirka> Look http://www.psma.com/sites/default/files/uploads/tech-forums-nanotechnology/presentations/2011-apec-sp-141-nanotechnology-about-nano-precision.pdf 11:56 < kirka> Zyvex has some success with PALE 11:56 < kirka> It's "unpublished" 11:56 <@fenn> lame 11:59 <@kanzure> kirka: foresight.org runs yearly in-person conferences, you should pester them to record them and post them online 11:59 <@fenn> i'm here to tell you that "one micron" is not "normal precision machining" 11:59 < kirka> Micromachining isn't interesting 11:59 < kirka> kanzure I'll think about it (and try) 12:00 < kirka> Look at H depassivation 12:00 <@kanzure> and nanoengineer-dev is the only one with software developershown 4 12:00 <@kanzure> oops 12:00 <@kanzure> ignore 12:00 -!- eudoxia [~eudoxia@r186-53-185-78.dialup.adsl.anteldata.net.uy] has joined ##hplusroadmap 12:01 <@fenn> it should be possible to machine blocks to small enough that they contain discernable numbers of atoms; then you sort the blocks (try not to let them stick together) and assemble the ones with the correct dimensions 12:01 < kirka> Oh Hi 12:01 < eudoxia> hey kirka 12:01 < kirka> eudoxia Look at log, we discussed MNT here 12:01 < eudoxia> yeah i was just reading thsat 12:01 <@fenn> hooray for us :\ 12:02 < kirka> Actually, if you want to discuss something, mail me 12:02 < kirka> My email is on the github 12:02 < eudoxia> kirka congratulations you are the second person to know crystal clear exists 12:02 < kirka> Heh 12:02 < eudoxia> s/know/find out 12:02 < kirka> Look at github, I have revived nanocad 12:02 < eudoxia> actually i think i told kanzure about that 12:02 < eudoxia> and i saw your new repo 12:02 < kirka> I found out by mysle 12:02 < eudoxia> i initially thought you were going to roll your own nanoengineer 12:03 <@kanzure> nanocad.git has none of his revision history 12:03 < kirka> I have read old mailing lists about NanoCAD development 12:03 < kirka> kanzure Yes, I have downloaded archive 12:03 <@kanzure> what is README.txt.bak for? 12:03 < kirka> It's his software, I just created backup 12:03 < kirka> That's artifact 12:03 < kirka> I'll remove that later 12:04 < kirka> You are so perfectionist~ 12:04 <@kanzure> yes 12:04 <@fenn> he wasn't always that way 12:05 <@kanzure> i got hit in the head by a radioactive meteorite 12:05 < Mariu> lol 12:05 < kirka> kanzure You seemed more enthusiastic about MNT in 2009 (I hav read some logs). Do you think that synthetic biology is more real alternative (for now) ? 12:06 < eudoxia> these days i just stay out of archived late nineties mnt discussions because it's so depressing 12:06 < eudoxia> so depressing 12:06 <@kanzure> kirka: why do you say i was more enthusiastic? 12:06 < kirka> eudoxia Well, the very thing that we know about it (and we are young) means that there is hope. 12:06 <@kanzure> synthetic biology is not mnt, i don't know who told you that 12:07 < kirka> kanzure I just get that feeling when I read logs. Maybe I'm mistaken. 12:07 <@kanzure> you are mistaken. 12:07 < kirka> Of course 12:07 < kirka> But synthetic biology is an approach for creating working molecular machinery 12:07 <@kanzure> uh, i guess. 12:07 <@kanzure> if your goal is to produce proteins, yes, biology is useful 12:08 <@fenn> i agree on this point. the confusing part is that proteins were evolved, not designed, so people think they must be floppy and weird 12:08 < kirka> Yes, proteins and enzymes 12:08 -!- emancipated is now known as emancipate 12:08 <@kanzure> fenn: well, i haven't seen a cuboid protein 12:08 < kirka> My goal is to use them for productive work 12:08 <@fenn> recent designed proteins have very high denaturation temperatures, because they aren't teetering on the edge of catastrophe (in the catastrophe theory sense) 12:09 < kirka> E.g. grow good polymer for some application 12:09 <@fenn> this is in fact eric drexler's current stance 12:09 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has joined ##hplusroadmap 12:09 <@kanzure> kirka: are you trying to say that because i know biology things, i must therefore be less enthusiastic about carbon placement? 12:09 <@fenn> that "nanotech" engineers should be pursuing protein design 12:09 <@kanzure> no, i don't think kirka thinks that 12:09 < kirka> fenn Yes, and he is probably right 12:10 <@kanzure> welp nevermind 12:10 < kirka> I like mechanics, yes 12:10 <@kanzure> kirka: you are an enigma wrapped in an enigma 12:10 <@fenn> an enzyme wrapped in a eudoxia 12:10 < kirka> But if it's impossible for now, we'll have to use other approaches 12:10 < kirka> Hehe 12:10 < eudoxia> hahaha what 12:10 <@fenn> sorry 12:11 < eudoxia> sometimes i think i have DID and kirka is one of my multiple personalities 12:11 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has quit [Remote host closed the connection] 12:12 < kirka> eudoxia Same think 12:12 < eudoxia> <3 12:12 < kirka> *thing 12:12 < kirka> eudoxia It may be generational thing 12:12 < kirka> Common information medium, etc 12:13 <@kanzure> fenn: anyway, where's my cubic protein 12:13 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has joined ##hplusroadmap 12:13 < kirka> This special purpose cluster could greatly help in protein design http://en.wikipedia.org/wiki/Anton_(computer) 12:14 <@fenn> er.. it was mentioned in here a couple weeks ago 12:14 < kirka> I have read about it's architecture 12:14 <@fenn> how do i get grep to return irc log results in chronological order? 12:14 <@kanzure> clusters only help once you have software, what software are you thinking of 12:14 < kirka> It's interesting, very high MIPS/mm^2 12:15 <@kanzure> fenn: grep -r whatever 2012* | tac 12:15 <@kanzure> erm, -r was not necessary 12:15 <@fenn> tac? 12:15 <@kanzure> backwards cat 12:15 < kirka> kanzure This cluster is composed of ASICS that are designed to run very high performance MM calculations (to the point of 7, 18 bit adders inside, etc) 12:15 <@kanzure> which MM calculations 12:15 < eudoxia> that's actually a thing 12:15 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has quit [Ping timeout: 245 seconds] 12:15 < kirka> It's usefule for verification 12:16 < kirka> MD 12:16 <@kanzure> which MD calculations -_- 12:16 < kirka> It's customizable to some extent 12:16 <@kanzure> they are ASICs. 12:16 < kirka> Thay have CPU and accelerators inside 12:16 < eudoxia> i think kanz is asking whether it's ab-initio or md 12:16 <@kanzure> which MD algorithms are implemented on these ASICs 12:17 < kirka> Hmph, they didn't say that or I didn't look carefully 12:17 < kirka> http://www-micrel.deis.unibo.it/~benini/files/MD/AntonCommACM08.pdf 12:17 <@kanzure> maybe they are lying 12:19 <@kanzure> "rate-limited interactions and performs charge spreading and force interpolation" 12:19 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has joined ##hplusroadmap 12:20 < kirka> Yes, they don't mention specific force fields 12:20 < kirka> Ah, that's what you mean by "algorithm" 12:20 <@fenn> ah here we go: http://www.nature.com/news/proteins-made-to-order-1.11767 koga and koga et al. 12:20 <@kanzure> "and is capable of computing the combined electrostatic and van der Waals interactions between a pair of atoms at every cycle. This 26-stage pipeline includes adders, multipliers, function evaluation units, and other specialized datapath elements." 12:21 <@fenn> i would settle for a dodecahedral protein 12:21 <@kanzure> how about anything regular 12:22 < kirka> Yes, long range is calculated Particle mesh Ewald and pair-pair interactions are computed directly 12:22 <@kanzure> okay 12:22 <@fenn> is a flat sheet not regular enough? 12:23 < kirka> Again, I don't understand why I do not hear about this machine often 12:23 < kirka> Millisecond runtimes witout larges supercomputer is very cool 12:23 < kirka> *largest 12:23 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has quit [Ping timeout: 245 seconds] 12:24 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has joined ##hplusroadmap 12:24 <@kanzure> fenn: probably breaks too easily if you're thinking of graphene? 12:24 <@fenn> not graphene, beta pleated sheets 12:25 <@fenn> you know, it's rather surprising nobody has made a cubic protein yet 12:25 <@kanzure> what about virus capsids? are any of those cube-like? 12:25 < kirka> * Dreams of enzyme that catalyses growth of strong fiber 12:25 <@fenn> no, but they're almost always regular or snub polyhedra 12:26 <@fenn> cubes just aren't energetically favorable 12:26 < Cat4D> has anyone bothered to make a tzolkin or long count calendar for this week's solstice? http://www.maya3d.mobi is close but there are 5 gear rings. 12:27 <@kanzure> maybe the dna origami pimps have done a cube 12:27 < kirka> eudoxia You know Will Ware wrote first versions of NanoCAD in common lisp (and/or scheme) 12:27 < eudoxia> i thought it was a java applet 12:27 <@fenn> yes they have done many cube-based structures (including cubes) 12:28 <@kanzure> eudoxia: scheme can be compiled to run on the jvm 12:28 < kirka> eudoxia Then he switched to java, because tehre wasn't much lispers 12:28 -!- Charlie [~quassel@64.31.59.70] has joined ##hplusroadmap 12:28 < eudoxia> when was this again? 12:28 < kirka> * digs archives 12:28 -!- Charlie is now known as Guest34442 12:29 < kirka> http://web.archive.org/web/20010417203831/http://discuss.foresight.org/~pcm/nanocad/date.html#95 12:29 <@kanzure> having read wware's python contributions to nanoengineer, i'm not convinced that guy knows how to write software 12:29 < kirka> * feels like cyberarchaeologist 12:29 < kirka> kanzure Maybe, I don't know 12:29 -!- brownies_ [~brownies@184-106-201-58.static.cloud-ips.com] has joined ##hplusroadmap 12:29 -!- brownies_ [~brownies@184-106-201-58.static.cloud-ips.com] has quit [Changing host] 12:29 -!- brownies_ [~brownies@unaffiliated/brownies] has joined ##hplusroadmap 12:30 <@kanzure> welcome back brownies_ 12:30 <@kanzure> fenn: dna origami cubes are probably terrible... "yeah let's pick the one material that has to constantly replicate itself to maintain any sort of integrity" 12:30 < kirka> kanzure What do you think about DNA-origami ion channel? 12:31 < brownies_> what the fuck? 12:31 <@kanzure> haven't read that paper yet 12:31 < kirka> Ah 12:31 < kirka> If you'll get it, I'd like to read it too. 12:31 -!- brownies [~brownies@unaffiliated/brownies] has quit [Disconnected by services] 12:31 -!- brownies_ is now known as brownies 12:32 < kirka> eudoxia I was very small when they wrote that software 12:32 < eudoxia> does it say what guy he used? 12:33 < kirka> MrEd probably 12:33 < eudoxia> i was one year old 12:33 < eudoxia> actually not even that 12:33 < kirka> I was two years old 12:34 < kirka> Actually, I'd do the same representation http://web.archive.org/web/20010420225736/http://discuss.foresight.org/~pcm/nanocad/0019.html 12:34 < kirka> At least for prototype. 12:34 <@fenn> kanzure: actually dna is very stable, it just doesn't have any cool functional groups 12:34 -!- Netsplit *.net <-> *.split quits: ElixirVitae 12:34 -!- Netsplit *.net <-> *.split quits: Guest55486, delinquentme 12:34 < eudoxia> http://stommel.tamu.edu/~baum/graphics-GUI.html#MrEd 12:34 < eudoxia> http://web.archive.org/web/19980123100842/http://www.cs.rice.edu/CS/PLT/packages/mred/index.html 12:35 -!- Cat4D [182bc9d2@gateway/web/freenode/ip.24.43.201.210] has quit [Ping timeout: 245 seconds] 12:35 < kirka> Yes 12:35 <@kanzure> fenn: it doesn't even last 1M years, how is that stable 12:35 < kirka> I'm using Racket extensively for some time 12:35 < eudoxia> holy fuck that is old 12:35 < kirka> It runs inverse kinematics in my robot, and operates with binary decision diagrams 12:36 < kirka> Racket is good for prototyping, it's JIT-compiled 12:36 < kirka> And has extensive library 12:38 <@fenn> kanzure: lasts longer than teh interwebz 12:38 <@fenn> DNA NANOTECHNOLOGY: MORE STABLE THAN A LISP INTERPRETER 12:39 < kirka> Hehe 12:39 < eudoxia> certainly lasts longer than most files online 12:39 <@fenn> man i really hate archive.org's new interface 12:39 < eudoxia> and mind you fenn some lisp interpreters have been up for years 12:40 < eudoxia> in space and what have youy 12:40 < kirka> And some are run at sapce 12:40 <@kanzure> archive.org's index page for files takes forever to load thanks to all of the javascript 12:40 <@kanzure> it forces the page to finish loading before the javascript is done, so you can't do anything 12:40 <@fenn> yes i'm a big fan of lisp scheme etc 12:40 <@kanzure> but if you wget the index page it's actually easier to navigate 12:40 < kirka> And I have heard about common lisp system running for ten years 12:40 <@kanzure> you don't even have to click "next" after 10 items. 12:41 < eudoxia> Deep Space 1 is apparently still running 12:41 < eudoxia> how about that 12:41 < kirka> Well, about MNT: 12:41 < kirka> There should be a forum 12:41 <@kanzure> fuck forums 12:41 <@kanzure> no 12:41 <@kanzure> absolutely not 12:41 < kirka> What then? 12:41 < emancipate> space? 12:41 < emancipate> http://www.youtube.com/watch?v=fd7FZkT9Y_s&feature=plcp live now 12:41 < kirka> Blog? 12:41 -!- ElixirVitae [~Shehrazad@78.168.153.210] has joined ##hplusroadmap 12:41 -!- ElixirVitae [~Shehrazad@78.168.153.210] has quit [Changing host] 12:41 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 12:41 <@kanzure> there are already tons of awful blogs, i don't see the benefit of another one 12:42 <@fenn> oh, does "forum" mean phpbb-type software? 12:42 <@kanzure> yes 12:42 < kirka> I'm actually writing article in russian about MNT 12:42 < kirka> But that's not it 12:42 -!- Helleshin [~talinck@cpe-174-101-208-182.cinci.res.rr.com] has joined ##hplusroadmap 12:42 < eudoxia> i should learn a few more languages 12:42 <@fenn> ah i had interpreted "sci.nanotech wants a MNT forum" to mean they weren't allowed/encouraged to talk about MNT there 12:43 -!- juri__ [juri@funkykitty.net] has joined ##hplusroadmap 12:43 <@kanzure> kirka: how about using diyhpl.us/wiki as a wiki, and continuing to use the irc channel 12:43 < eudoxia> no use wiki.transhumani.com 12:43 <@kanzure> sigh 12:43 < kirka> kanzure It's ok, but does it have a large impact? 12:43 <@fenn> no use fennetic.net/machines/ !! 12:44 < kirka> fenn Bookmarked 12:44 <@kanzure> machines/ is not git controlled, shame on you fenn 12:44 <@fenn> sorry nothing about nanotech there either :P 12:44 < kirka> http://fennetic.net/machines/hexapod.html :3 12:44 -!- Netsplit over, joins: delinquentme 12:44 < kirka> I have walking hexapod 12:44 <@fenn> jrayhawk won't let me run php 12:44 <@kanzure> fenn: i installed php in a chroot if you want to do that 12:45 <@kanzure> but really, i don't think mediawiki is a good idea 12:45 <@fenn> no, it's abandonware 12:45 <@fenn> oh, this is pukiwiki, not mediawiki 12:45 <@kanzure> i was responding about the other link 12:45 <@fenn> my brain isn't working right lately 12:46 < kirka> I thank that there should be more students inspired to become sciencists and contribute to MNT 12:46 <@kanzure> one topic at a time kirka 12:46 < kirka> *think 12:46 -!- ivan`_ [~ivan@unaffiliated/ivan/x-000001] has joined ##hplusroadmap 12:46 < kirka> That's one topic 12:46 < jrayhawk> it's true, i am indeed a cruel and vicious monster 12:46 <@kanzure> how about instead of a forum, you just continue talking with people in here 12:46 < kirka> It's ok, but there is a few 12:46 <@fenn> let's petition congress to create a fund for research development and promotion of nanotechnology ... oh wait 12:46 <@kanzure> although, i do think pestering foresight.org to post their videos would be useful 12:46 < nmz787> when XCOM0 is a grep command, then there is this if if [ -n "$XCOM0" ] || [ ! "$XCOM0" = "" ]; then echo $XCOM1 12:46 < kirka> I think we need some good articles 12:46 < nmz787> what is the -n 12:47 < eudoxia> haha fenn that's not funny :( 12:47 < nmz787> i need some good particles 12:47 < kirka> The http://thenanoage.com/ isn't that bad, but should be better 12:47 < jrayhawk> nmz787: man test 12:47 < jrayhawk> or man \[ 12:47 -!- Netsplit *.net <-> *.split quits: Guest34442 12:47 -!- Netsplit *.net <-> *.split quits: ivan`, juri_, saurik 12:47 < kirka> kanzure I'll write that down, about foresight 12:47 < nmz787> jrayhawk: I know I'm a man 12:47 <@kanzure> nmz787: -n is "True if FILE exists and has been modified since it was last read." 12:47 <@kanzure> nmz787: no he was telling you to type "man test" 12:47 < nmz787> hmm 12:47 -!- Charlie_ [~quassel@64.31.59.70] has joined ##hplusroadmap 12:47 < nmz787> yes i know 12:47 < nmz787> :D 12:48 < nmz787> i was joke 12:48 <@kanzure> how original.. 12:48 <@kanzure> ok 12:48 < jrayhawk> actually -n is 'the length of STRING is nonzero' 12:48 < nmz787> that makes more sense 12:48 <@kanzure> ah i see that now 12:48 < nmz787> so is there any benefit for if [ -n "$XCOM0" ] || [ ! "$XCOM0" = "" ]; then 12:49 < nmz787> having the two cases 12:49 <@kanzure> kirka: the other thing that i'm disappointed abouti s the lack of continued contributions to nanoengineer from the original development team 12:49 -!- ivan`_ is now known as ivan` 12:49 <@kanzure> kirka: what has drexler been doing exactly? why doesn't he publish his software? 12:49 < kirka> kanzure Yes, that's sad 12:49 <@kanzure> they are a bunch of jerks anyway.. 12:49 < kirka> kanzure He isn't a programmer as far as I know 12:49 <@kanzure> nanoengineer needs to be split into separate python modules without the gui 12:49 < kirka> Yes 12:49 < kirka> I agree 12:50 <@kanzure> "import nanoengineer" doesn't really work, except in the non-gui branch. but that's because i used mocks. 12:50 < kirka> ACtually, being honest, I'm already developing architecture for simple molecular CAD, UHV-nanotech oriented. 12:50 <@kanzure> you already told us 12:50 <@kanzure> i didn't forget 12:50 -!- Netsplit over, joins: saurik 12:50 < kirka> Ah, ok 12:51 < nmz787> kirka: 12:51 < nmz787> kirka: cool 12:51 < kirka> I'll have time for that after january 15th 12:51 < nmz787> kirka: why have we only talked about CNC before? 12:51 < kirka> I think minimal cad won't be larger than 2k lisp lines of code 12:51 <@fenn> does everyone re-use those same atom scale gear animations? 12:52 <@kanzure> fenn: yes 12:52 <@kanzure> fenn: sad isn't it 12:52 < kirka> nmz787 I have some interest in CNC, there is some stepper motor graveyard in my home, heh 12:52 <@fenn> somehow it seems more "real" by leaving in the thermal noise artifacts (which should be blurred out on the gear rotation timescale) 12:52 < kirka> ACtually, these gears are very far into the future 12:52 < kirka> You know this fo course 12:53 <@fenn> yeah, i'll be impressed if we can make carbon anything 12:53 < kirka> Just manufacturing diamond strained shell bearing won't be easy 12:53 < nmz787> "once upon a time people thought they could make atomic gears" 12:53 < kirka> I'm thinking about minimal prt sets 12:53 < eudoxia> i'm waiting for an ab-initio simulation of those gears 12:53 < jrayhawk> I can slap up vhosts reasonably easily for Sympa, which is a sort of web forum/mailing list hybrid 12:53 <@kanzure> jrayhawk: i don't think these people will like sympa, to be honest 12:53 < kirka> eudoxia Yes, that'd be interesting 12:53 < eudoxia> i mean even freitas and merkle have admitted they have only done MDs and don't know if there will be mechanosynthethic reactions between the gears 12:53 <@kanzure> jrayhawk: the reason they want forums is because they are familiar with those layouts, and i don't really want to mod sympa for that 12:54 <@fenn> i think people prefer forums because they can be divided up into sub-forums 12:54 <@fenn> and of course the web browsing aspect 12:54 <@kanzure> people prefer forums because they don't know how to use email 12:54 <@fenn> yeah, that's that i meant 12:55 <@fenn> fuck why did wave have to die 12:55 <@fenn> now we're stuck with phpbb for eternity 12:55 < kirka> There is a lot of black boxes in Nanosystems 12:55 < eudoxia> i don't even know how to use mailinglists 12:55 <@kanzure> no we're stuck with phpbb, disqus, discuz, ikonboard, invisionboard, infopop, ubb, vbulletin, smf, and a million other shitty things. 12:55 < kirka> I think that it would be useful to design and analyse additional simple components 12:56 < kirka> Rod logic element for example (springs, etc aren't obvious) 12:56 <@kanzure> fenn: also there's a community-supported version of wave somewhere 12:56 < kirka> And method of manufacturing for rods 12:56 < kirka> How do we "tear" rod from substrate? 12:56 < kirka> That bugs me 12:56 <@fenn> the sticky fingers problem? 12:56 < eudoxia> dude kirka 12:57 < eudoxia> build things on a germanium layer 12:57 < eudoxia> that is etched away 12:57 < kirka> That's not bad 12:57 <@fenn> are rods built separate from the mechanism, or built in place like a 3d printer? 12:57 < kirka> So the first dimers will be held in place by non-covalent forces? 12:58 * fenn hasn't actually read nanosystems 12:58 < kirka> fenn Probably separate 12:58 < kirka> But it isn't described there 12:59 < kirka> >etched away 12:59 < kirka> eudoxia SO there should be separate tool for adding dimer to Ge surface? 13:00 < eudoxia> i was thinking PALE 13:00 < eudoxia> at least for an initial layer 13:00 < kirka> Aha, that's another story. 13:00 < eudoxia> you are rigth: the dimer tools have Ge behind the dimers, they only work for depositing the dimers on C surfaces 13:01 < kirka> Something weaker than Ge 13:01 < kirka> Si 13:01 < eudoxia> otherwise it's Ge on both sides and that will fuck up the error rates 13:01 < kirka> But it won't be reliable 13:01 < eudoxia> we're running out of Group IV kirka 13:01 < kirka> And etching isn't allowed in mechanosynthesis 13:01 < kirka> Hehe 13:01 < eudoxia> next down is lead i think 13:01 < jrayhawk> sympa is pretty low investment for us and has a lot of desirable characteristics, so we don't really need to speculate about its suboptimalities, we can just build it and see if people come 13:02 <@kanzure> jrayhawk: okay fine 13:02 < kirka> jeayhawk Are you talking about some bbs-line engine? 13:02 < jrayhawk> what do those words even mean 13:03 <@kanzure> hahah 13:03 < kirka> Sorry, a lot of typos 13:03 < kirka> bbs-like of course 13:03 <@kanzure> depends on what you mean by bbs... if you consider newsgroups and mailing lists and forums to be bbs like, then anything is possible 13:04 < kirka> eudoxia I was wrong with Si, maybe Sn would do it. 13:04 < jrayhawk> well, you can telnet into port 80 and pretend you're using a really ugly BBS 13:04 < jrayhawk> really ugly, really tedious BBS 13:04 < kirka> New generation uses imageboards, heh 13:04 <@kanzure> not really 13:05 < jrayhawk> clearly i should embed ANSI art in HTML comments for people who try to do that. 13:05 <@kanzure> jrayhawk: also, the chinese call php forums (like 'discuz' (not 'disqus')) bbs 13:05 < jrayhawk> ah 13:05 <@kanzure> so that complicates things 13:06 < jrayhawk> if you don't mind me hijacking the entire local part namespace for diyhpl.us, you can MX it over to mail.svcs.cs.pdx.edu 13:06 <@fenn> is there some kind of meta forum scraper interface so i can read forum posts from a command line? 13:07 < jrayhawk> they often have RSS/Atom feeds 13:07 < kirka> eudoxia Well, I think it'll be very useful to analyze these questions. And design some structures for manufacturability. 13:07 <@kanzure> fenn: there's boardreader and rss stuff, but you can't reply by rss and boardreader doesn't have a cli ui 13:07 <@fenn> jrayhawk: but that's only recent posts right? typically i want to read threads that are years old 13:07 <@kanzure> man why isn't cli ui called clui ("they haven't got a clui") 13:07 <@kanzure> fenn: nope doesn't exist. 13:07 < jrayhawk> RSS interfaces are often parameterized. "?past=100000" or some such 13:07 <@kanzure> i wrote a common api to interact with forums like that, but it was primarily for spamming purposes 13:08 < eudoxia> kirka did you make that thread on /sci/ 13:08 * kirka so embarassing 13:08 <@kanzure> so you two are 4channers 13:08 <@kanzure> nanofags? 13:08 < kirka> I haven't read 4chan for years 13:08 <@kanzure> let's see.. which thread is he talking about http://boards.4chan.org/sci/ 13:08 < kirka> Actually I think that /scis's intelelctual level is quite low 13:09 < eudoxia> i know 13:09 < eudoxia> https://boards.4chan.org/sci/res/5345644 13:09 < kirka> I think that if somebody downloads the book and will read that a little, that'll be a good thing 13:09 <@kanzure> btw, pmetzger made a nanotech facebook group that he wanted to be high quality 13:09 <@kanzure> but sadly the only contribution was my post on nanoengineer 13:09 <@kanzure> so i'm pretty sure perry failed at his mission 13:10 < kirka> On one russian imageboard I had something like 80 downloads 13:10 < jrayhawk> haha "facebook" "high quality" 13:10 <@kanzure> jrayhawk: yes i agree 13:10 <@kanzure> but hey, i was being friendly and helped him out 13:10 < kirka> I don't have accounts in any social networks (irrational feelings towards data mining) 13:10 <@kanzure> pretty weird for someone who just suggested a forum 13:11 <@fenn> 4chan is about as anonymous as you can get without resorting to tor 13:11 <@kanzure> also, this is the second time in the last 48 hours someone has linked me to my github repos 13:11 < kirka> Forums are perceived as something "oldschool" these days 13:11 <@kanzure> someone else posted a link to my github account in /vp/ 13:11 < jrayhawk> alternatively lists.diyhpl.us would work, if you want less namespace pollution 13:12 <@kanzure> jrayhawk: oh sorry, i meant to reply to you, uh 13:12 <@kanzure> it would be nice if i could have access to my mailbox from gnusha/bryan.svcs.cs.pdx.edu 13:12 <@kanzure> if that's still the case then go for it with the MX record changes 13:12 <@kanzure> there's nothing important in the current mailbox 13:12 < jrayhawk> mail...box...? 13:13 <@kanzure> oh right everything is forwarded? 13:13 < jrayhawk> Yeah. 13:13 <@kanzure> damn mutt isn't even installed. well, i guess i never checked my mail huh. 13:13 < eudoxia> why would 13:13 < eudoxia> oh right 13:13 < jrayhawk> mail:/# grep -ri bryan /etc/exim4/aliases/ 13:13 < jrayhawk> /etc/exim4/aliases/diyhpl.us:bryan: kanzure@gmail.com 13:13 < eudoxia> right, your pokemon thing 13:14 < jrayhawk> which only local delivery would hit 13:14 <@kanzure> ah i see 13:15 <@kanzure> i'll modify dns in a few hours 13:15 < jrayhawk> ping me when you do 13:16 < jrayhawk> i guess forum.diyhpl.us is more comically manipulative of people's expectations 13:16 <@fenn> ugh why do people use these file hosting services with timers 13:16 <@kanzure> there are various tools that auto-skip the timers 13:16 <@kanzure> there's a cli tool i forget the name of.. hrm. 13:17 <@fenn> and popups and redirect loops and endless upsells 13:17 <@fenn> "are you SURE you want to download the file at REGULAR SLOW speed?" 13:17 <@kanzure> and all of the ads that you're never quite sure if they really are ads 13:17 <@kanzure> i usually have excellent ad detection skills, and those ads are getting really good at looking like the right thing to click. almost. 13:17 <@fenn> and then it hangs because the javascript was bad or something, and you can't download the file anyway 13:18 < brownies> AdBlock + Ghostery removes most of them 13:18 < jrayhawk> slimrat-nox maybe 13:19 <@kanzure> brownies: yes, yes, but i sort of want to look at ads for other reasons 13:19 <@fenn> oh neat 13:19 <@kanzure> brownies: i use adblock as a whitelist heh 13:27 <@fenn> "we do not recommend that you place landscapes on the ceiling. To do so has the potential to create subtle confusion or disorientation in the mind of the observer." 13:27 <@fenn> right. 13:29 < Mariu> :o 13:29 < kirka> Wow, that's some cool number http://rghost.ru/42226664 13:30 < kirka> There are people in that site who upload a ton of files to "get" the cool one 13:30 <@fenn> it is an omen! 13:34 < strangewarp> o man 13:36 <@fenn> this is actually kinda neat. would be even better with lenslet arrays for a 3d effect http://www.skyfactory.com/products/ 13:40 <@fenn> "integral imaging" is the magic nonsense word 13:48 < eudoxia> guys what is that molecule that's one big chain of carbon atoms, that has single and triple bonds 13:49 -!- sivoais [~zaki@199.19.225.239] has quit [Read error: Operation timed out] 13:49 < eudoxia> i can't remember the word 13:49 < eudoxia> "intercalates" single and triple bonds 13:49 < eudoxia> come on brain 13:49 < eudoxia> alternating, that's the word 13:50 < eudoxia> a long chain of C alternating single and triple bonds 13:50 <@fenn> polyacetylene? 13:51 <@fenn> oh not quite 13:51 < kirka> Polyalkynlenes 13:51 < kirka> http://old.iupac.org/publications/books/pbook/PurpleBook-C8.pdf 13:51 < kirka> Hmph 13:51 < eudoxia> it was something like polyene 13:51 < eudoxia> the name 13:52 < eudoxia> http://en.wikipedia.org/wiki/Polyyne 13:52 < kirka> Aha 13:53 <@fenn> i bet that purplebook is the only place the word polyalkynlene exists 13:53 -!- jmil [~jmil@hive76/member/jmil] has quit [Quit: jmil] 13:53 < kirka> And is there any polymer with hexagonal monomers and double bonds between theme? 13:53 < kirka> fenn you are right 13:54 < eudoxia> kirka, my logic rod was made of that, and the knobs were benzene with two contiguous H's replaced with Fluorine 13:54 < eudoxia> it was not really stiff enough to be called a rod though 13:54 <@fenn> see even wikipedia calls it polyacetylene 13:55 < kirka> http://www.molecularassembler.com/Nanofactory/Graphics/LogicRod.jpg 13:55 < kirka> I think for initial deign that's ok 13:55 < kirka> *design 13:55 < eudoxia> yeah mine was too scifi 13:55 < eudoxia> well i gotta run now 13:55 < eudoxia> bai~ 13:55 -!- eudoxia [~eudoxia@r186-53-185-78.dialup.adsl.anteldata.net.uy] has quit [Remote host closed the connection] 13:55 < kirka> Exaflop per cubic cm probably could be reached with that 13:56 < kirka> bye 13:56 <@fenn> why do the rods have to be so big? why not just a simple cis/trans isomerization? 13:56 < kirka> Stability 13:56 < kirka> Rigidity 13:56 < kirka> Reliability 13:57 < kirka> Of course later smaller devices will be developed 13:57 < kirka> I think we should design for manufacturability for now 13:57 <@fenn> i bet from an information theoretic perspective, more copies that are individually less reliable are more reliable in aggregate 13:57 < kirka> That's good point 13:57 <@fenn> also it may turn out that smaller devices are more easily fabricated 13:58 <@fenn> for example as protein conformation changes 13:58 < kirka> Do you think that it's possible to build mechaniical logic with proteins? 13:58 <@fenn> otherwise what's the point of doing nanotechnology at all 13:59 <@fenn> you're back at stonehenge, i mean it's still there right? pretty reliable 13:59 < kirka> As the end target super-miniaturization is ok 13:59 <@fenn> i would be surprised if there doesn't already exist a mechanical logic system made of protein, we just have to recognize it 14:00 < kirka> But complex side group chemistry of polyyne rods will require advanced toolsets 14:00 <@kanzure> huh? receptors are mechanical logic. 14:00 < kirka> You are right 14:00 < kirka> Yes, e.g. Rhodopsin 14:01 < kirka> It changes conformation when a photon hits him 14:01 <@fenn> polyynes dont have side groups 14:01 <@kanzure> yes we know about rhodopsins 14:01 <@kanzure> but that's not what i mean by mechanical 14:01 < kirka> fenn knobs? 14:02 < kirka> kanzure What then? 14:02 < kirka> Ah, receptors 14:02 <@kanzure> g-signal crap 14:02 <@fenn> why does that require "advaned toolsets"? nature does it already, apparently: http://en.wikipedia.org/wiki/Polyyne#Biological_origins 14:03 < kirka> Ok 14:04 < kirka> I'm still dreaming that with UHV-STM could help in bypassing "biological bootstrap". 14:04 < kirka> *that UHV-STM 14:05 <@fenn> well, plain old organic chemistry even 14:05 <@fenn> to be honest i don't really understand the rod logic idea, so i should go read that book 14:06 < kirka> That's quite simple 14:06 < kirka> http://www.zyvex.com/nanotech/mechano.html 14:06 < kirka> But it's very mechanical 14:07 < kirka> "Showing utter contempt for chemistry" as someone said 14:07 <@fenn> "The entire computation could in principle be performed by a single block of complexly shaped oscillating elastic material." is what i'm saying 14:07 < kirka> That's more complex 14:07 < kirka> It's Merkle's ideas 14:08 < kirka> http://www.halcyon.com/nanojbl/NanoConProc/nanocon2.html 14:08 <@fenn> i don't agree that it will dissipate no energy though, otherwise how do you do anything at all? (bit erasure energy) 14:08 < kirka> He is into reversible logic 14:08 <@fenn> meh 14:08 < kirka> That's complex too 14:08 < kirka> We need just rod logic 14:10 < kirka> Hmph seems nanosystems' treatment of rod logic is simpler than anything evailable on the internet 14:10 < kirka> *available 14:10 < kirka> http://www.halcyon.com/nanojbl/Images/RodGate1.gif 14:10 < kirka> http://www.halcyon.com/nanojbl/Images/RodGate2.gif 14:11 < kirka> "1" means ther is knob which belongs to rod that's perpendicular to the image 14:12 < kirka> If ther is at least one knob, then the main rod cannot slide 14:12 <@fenn> hmm this isn't OCR'd 14:12 < kirka> That's it, you have a switch. 14:14 < kirka> When I'll have full design of logic rod cell, register and a couple of other components, I can design a whole CPU. 14:14 < kirka> I have some experience with that. 14:15 <@kanzure> fenn: there's a nanosystems.tar.gz on the server which isn't OCR'd if you'd like that version 14:15 < kirka> For the begininng, of course, I'll do simple things like full adder 14:15 <@fenn> yeah i have that version already, thanks 14:15 <@fenn> kirka might want it though 14:15 < kirka> kanzure my DJVU isn't OCR'd too 14:15 <@kanzure> who the hell uses djvu 14:15 <@kanzure> what? 14:15 <@fenn> it's much higher resolution than the djvu file 14:15 < kirka> Ah, could be 14:16 < kirka> I find 15 mb djvu more convenient 14:16 < kirka> Wait 14:16 <@fenn> djvu is pretty good compression ratio; it can store text layout and images. what more do you want? 14:16 < kirka> I have compressed it lossless 14:16 <@kanzure> hmm where did i put it 14:17 <@kanzure> 2012-09-21.log:08:34 < kirka> That's it http://gnusha.org/stuff_to_deal_with/nanosystems.tar.gz 14:17 <@kanzure> i wonder why that doesn't exist 14:17 <@kanzure> lousy place to store it anyway 14:18 <@fenn> by definition 14:18 <@kanzure> fenn: if you have a copy could you upload it? it would take me an hour or something. 14:18 < kirka> I have a copy 14:18 < kirka> But it's too late for today 14:18 <@fenn> i only have .jpg's i made from the original .png's 14:19 <@fenn> why isnt the original .quark file available? sheesh 14:19 <@fenn> all this stupid reverse engineering 14:20 <@kanzure> i don't understand why merkle doesn't have a giant file drop of all these things 14:21 <@kanzure> i guess it doesn't occur to people that http is a nice thing to serve 14:23 < kirka> Bye, I'm sleeping 14:23 -!- kirka [~Kirka@95-161-252-108.broadband.spb.TiERA.org] has left ##hplusroadmap [] 14:24 <@kanzure> so, after looking at nanoengineer's code for months, i'm not convinced there's anything useful in there 14:24 <@kanzure> most of it is gui stuff 14:24 <@kanzure> and the stuff that isn't gui stuff is riddled with gui stuff anyway 14:25 <@fenn> is this surprising? it's a GUI program after all 14:25 <@kanzure> theoretically there's a core library 14:25 <@kanzure> with the file format stuff (which, surprise, is not separable) 14:25 <@fenn> not separable from what? 14:26 <@kanzure> from all the other code 14:26 <@kanzure> i should be able to "import nanoengineer" in python and get useful things, not a gui. 14:26 <@fenn> ah 14:26 <@fenn> make it so, number one 14:26 <@fenn> :set editor=vaporize 14:28 <@fenn> do you have an archive of _Nanotechnology_ by IOPP? 14:28 <@fenn> http://iopscience.iop.org/0957-4484/ 14:28 <@kanzure> doesn't sound like a thing i have, no 14:29 <@fenn> apparently that's where merkle published a lot of stuff 14:34 -!- EnLilaSko [~Nattzor@unaffiliated/enlilasko] has quit [Remote host closed the connection] 14:34 -!- augur [~augur@129-2-129-33.wireless.umd.edu] has quit [Remote host closed the connection] 15:01 -!- juri__ is now known as juri_ 15:09 -!- Juul [~Juul@171.66.173.105] has joined ##hplusroadmap 15:18 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has quit [Read error: Connection reset by peer] 15:21 -!- jmil [~jmil@hive76/member/jmil] has joined ##hplusroadmap 15:29 -!- ElixirVitae [~Shehrazad@95.5.121.91] has joined ##hplusroadmap 15:29 -!- ElixirVitae [~Shehrazad@95.5.121.91] has quit [Changing host] 15:29 -!- ElixirVitae [~Shehrazad@unaffiliated/shehrazad] has joined ##hplusroadmap 15:31 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has joined ##hplusroadmap 15:43 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 245 seconds] 15:45 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 15:48 -!- safitan [~safitan@75-105-12-23.cust.wildblue.net] has joined ##hplusroadmap 15:49 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 248 seconds] 15:50 -!- ArmilusDajjal [~safitan@75-105-12-23.cust.wildblue.net] has quit [Ping timeout: 265 seconds] 15:52 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 15:52 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has quit [Remote host closed the connection] 15:55 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has joined ##hplusroadmap 15:56 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 255 seconds] 15:57 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has quit [Remote host closed the connection] 15:58 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 15:59 -!- sivoais [~zaki@199.19.225.239] has joined ##hplusroadmap 16:01 -!- panax [~panax@68.200.160.182] has quit [Remote host closed the connection] 16:02 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 16:06 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 244 seconds] 16:08 < emancipate> hey anyone playing with opto genetics? and good reads you can point me to? 16:08 < emancipate> any* 16:09 <@kanzure> http://anselmlevskaya.com/ 16:09 < emancipate> thanks 16:09 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 16:11 < pasky> laser printed dna? 16:11 < pasky> wow 16:13 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 244 seconds] 16:16 <@fenn> a cute phrase that conveys little information about what's actually going on 16:16 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 16:21 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 260 seconds] 16:23 -!- panax [~panax@68.200.160.182] has joined ##hplusroadmap 16:24 -!- AdrianG [~dextro@unaffiliated/amphetamine] has joined ##hplusroadmap 16:30 <@kanzure> sloan foundation bioterrorism preparedness http://www.upmc-biosecurity.org/website/resources/publications/2012/2012-12-12-prep_bioterrorism.html#pdf 16:31 < safitan> paid for by the sloan foundation and listeners like you 16:46 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has joined ##hplusroadmap 16:47 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has quit [Remote host closed the connection] 16:50 -!- chris_99 [~chris_99@unaffiliated/chris-99/x-3062929] has quit [Quit: Leaving] 17:00 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has joined ##hplusroadmap 17:03 -!- augur [~augur@c-98-218-127-183.hsd1.md.comcast.net] has quit [Remote host closed the connection] 17:20 -!- emancipate [~emancipat@50.14.1.36] has quit [Ping timeout: 252 seconds] 17:21 <@kanzure> brainport.io 17:25 <@fenn> io error: brain not found 17:25 -!- safitan is now known as ArmilusDajjal 17:30 -!- yashgaroth [~f@cpe-66-27-117-179.san.res.rr.com] has joined ##hplusroadmap 17:33 -!- ThomasEgi [~thomas@panda3d/ThomasEgi] has quit [Remote host closed the connection] 17:35 <@kanzure> yashgaroth: you got a beat on any cubish proteins? 17:35 < yashgaroth> Borg1 is the only one I'm familiar with 17:36 -!- emancipate [~emancipat@50.14.1.36] has joined ##hplusroadmap 17:36 < yashgaroth> they tend to form spheres if they're gonna be big enough to form cubes 17:37 < AdrianG> how safe is TDCS 17:38 <@kanzure> yashgaroth: i can't find any pdb files of it, it seems to be better known as CDC42EP2 17:39 < yashgaroth> yeah sorry I was joking, y'know borg cubes and all 17:39 <@kanzure> well some fucking biologist thought it would be funny to name his protein borg1 apparently 17:39 < yashgaroth> it's all about the puns, gotta stand out from the crowd of 100,000 other proteins 17:40 <@kanzure> if they take up all the cool names with trivial crap, what are we going to name the really cool shit 17:41 < yashgaroth> there's no formal rule against using profanity, and naming your protein 'Fuck' would certainly help keep it out of all the shitty pop-sci articles 17:42 < emancipate> it might not be related but you might find something usefull here, pdb rich server http://qsad.bu.edu/data/pdbfiles/ 17:42 < yashgaroth> those all look like small molecules 17:43 < emancipate> yeah they are, I just came across them a whhile back 17:44 < emancipate> another might have doubles from other server http://cat.middlebury.edu/~chem/chemistry/pdb/ 17:46 < emancipate> my other link was dead too bad, but heres the last I have http://mouse.belozersky.msu.ru/npidb/pdb/dna/ 17:47 < emancipate> go up one directory he has other interesting stuffs 17:48 < emancipate> hmm I havent been to it in a while, looks like he updated it http://mouse.belozersky.msu.ru/npidb/pdb/pdb_new/ 17:48 < emancipate> ok back to lurking, enjoy 17:49 < yashgaroth> don't take this the wrong way, but all pdb files are available at PDB and I have no idea what that guy's research is about 17:49 <@kanzure> heh 17:54 < emancipate> whoops sorry, I just thought one of his pdb would be what you were looking for 17:55 < emancipate> I never did check against pdb if it was available there too, kinda new still playing around sources and reading 17:56 -!- joshcryer [g@unaffiliated/joshcryer] has joined ##hplusroadmap 17:59 <@fenn> interesting. the dawn spacecraft (that went to vesta and now going to ceres) main telescope image processor uses a "soft" fpga based CPU, available under the LGPL from opencores :O 17:59 <@kanzure> is there an alt-tab shortcut to not have to cycle through all the tabs to get back to your current tab? and not "alt-tab release alt-tab release" 18:00 < emancipate> ctrl+number I think 18:00 < emancipate> well depends on the client 18:01 < emancipate> when I used hydra , and pidgin I think 18:02 <@fenn> alt-shift-tab? 18:02 < emancipate> ohh its alt+number in chatzilla :D 18:22 <@fenn> EVOLVE OR DIE!!!1 http://1.bp.blogspot.com/-pyWHC2_OWYQ/Tgnxf5JWwJI/AAAAAAAAA-Q/lg32DmTzol8/s1600/Cybergen.jpg 18:22 <@kanzure> alt-shift-tab just goes backwards instead 18:22 <@kanzure> maybe it's time to get off of gnome/kde 18:23 <@fenn> i've been using lxde and various bits from gnome 18:24 <@fenn> it's not that super duper really, but i figure eventually gnome will drop the "classic" mode altogether and be completely useless 18:25 <@kanzure> aren't we all supposed to be using xmonadnads or something 18:25 <@kanzure> aha jrayhawk-approved 18:25 <@kanzure> well it's decided then 18:25 <@kanzure> can't be much worse than gnome 18:26 <@fenn> i could never figure out what a monad was, that's my excuse 18:27 <@kanzure> something about philosophical optimism.. and german encyclopedia projects. 18:27 -!- Urchin[Emacs] [~user@unaffiliated/urchin] has quit [Remote host closed the connection] 18:27 < jrayhawk> something about burritos 18:28 <@kanzure> also, what's the right way to reset the keyboard on linux if something goes terribly wrong? xsetkb isn't doing the trick for a friend. 18:28 <@kanzure> i thought it would appear in lsmod but it doesn't 18:34 -!- Juul [~Juul@171.66.173.105] has quit [Quit: Leaving] 18:34 < brownies> burritos++ 18:37 < jrayhawk> burritos within burritos, my friend 18:37 < jrayhawk> it's just burritos all the way down 18:37 -!- panax [~panax@68.200.160.182] has quit [Ping timeout: 276 seconds] 18:37 -!- panax [panax@131.247.116.22] has joined ##hplusroadmap 18:38 < jrayhawk> re: kbd: too many potential layers to think about, and I don't fully understand it myself. oftentimes restarting udev helps. 18:40 <@kanzure> thanks, i think "sudo service udev restart" might work in that case. 19:03 -!- Mariu [Jimmy98@89.41.57.33] has quit [Ping timeout: 244 seconds] 19:35 <@fenn> Johnny Depp will play Will, a scientist whose brain is uploaded into a supercomputer in Transcendence (2014) 19:35 <@fenn> 2014 refers to the movie release date presumably, not the date johnny depp is uploaded. 19:43 -!- emancipate [~emancipat@50.14.1.36] has quit [Quit: boom] 19:48 < AdrianG> lol fenn 19:52 < joshcryer> Oblivion and Pacific Rim are two new-tech blockbusters coming out. Guess hollywood is getting back into tech stuff again. 19:55 -!- docl [~docl@unaffiliated/docl] has quit [Quit: leaving] 20:03 -!- docl [~docl@ds4403.dreamservers.com] has joined ##hplusroadmap 20:03 -!- docl [~docl@ds4403.dreamservers.com] has quit [Changing host] 20:03 -!- docl [~docl@unaffiliated/docl] has joined ##hplusroadmap 20:08 -!- docl [~docl@unaffiliated/docl] has quit [Quit: leaving] 20:13 -!- ArmilusDajjal [~safitan@75-105-12-23.cust.wildblue.net] has quit [Quit: Leaving] 20:14 -!- docl [~docl@ds4403.dreamservers.com] has joined ##hplusroadmap 20:14 -!- docl [~docl@ds4403.dreamservers.com] has quit [Changing host] 20:14 -!- docl [~docl@unaffiliated/docl] has joined ##hplusroadmap 20:14 -!- docl [~docl@unaffiliated/docl] has quit [Client Quit] 20:19 -!- docl [~docl@unaffiliated/docl] has joined ##hplusroadmap 20:25 -!- ArmilusDajjal [~safitan@75-105-12-23.cust.wildblue.net] has joined ##hplusroadmap 20:30 -!- ArmilusDajjal [~safitan@75-105-12-23.cust.wildblue.net] has quit [Ping timeout: 265 seconds] 20:34 -!- ArmilusDajjal [~safitan@75-105-12-23.cust.wildblue.net] has joined ##hplusroadmap 20:51 <@kanzure> bloop 20:53 <@kanzure> javascript sure has gotten weird http://possan.se/junk/webglass/index.html 21:10 <@kanzure> finally someone came to their senses and made hatsune miku webgl http://edv.sakura.ne.jp/mmd/ 21:11 -!- Helleshin [~talinck@cpe-174-101-208-182.cinci.res.rr.com] has quit [Remote host closed the connection] 21:12 <@kanzure> well.. sort of. 21:45 -!- BioGuy [~BioGuy@184-76-124-69.war.clearwire-wmx.net] has joined ##hplusroadmap 21:46 -!- BioGuy [~BioGuy@184-76-124-69.war.clearwire-wmx.net] has quit [Read error: Connection reset by peer] 22:01 -!- _sol_ [~Sol@c-174-57-58-11.hsd1.pa.comcast.net] has quit [Read error: Connection reset by peer] 22:02 -!- _Sol_ [~Sol@c-174-57-58-11.hsd1.pa.comcast.net] has joined ##hplusroadmap 22:24 <@kanzure> "Wednesday 12/19: 6pm - 7pm Molecular Biology of the Cell Study Group" 22:24 <@kanzure> didn't know biocurious had that 22:25 <@kanzure> http://www.nature.com/spoton/2012/12/spoton-nyc-diy-bio-cant-make-the-livestream-viewing-join-us-online-on-friday-instead/ 22:25 <@kanzure> http://www.scilogs.com/beyond_the_lab/how-do-we-make-diybio-sustainable/ 22:25 <@kanzure> "nature publishing group" are the last people you should ask about diybio 22:26 <@kanzure> oh look they even linked to me, how rebelious of them to actually care. 22:32 -!- BioGuy [~BioGuy@184-76-124-69.war.clearwire-wmx.net] has joined ##hplusroadmap 22:34 <@kanzure> BioGuy: hi 22:36 < BioGuy> Hey, long time no chat 22:43 -!- Helleshin [~talinck@cpe-174-101-208-182.cinci.res.rr.com] has joined ##hplusroadmap 23:06 -!- yashgaroth [~f@cpe-66-27-117-179.san.res.rr.com] has quit [Quit: Leaving] 23:07 -!- jmil [~jmil@hive76/member/jmil] has quit [Ping timeout: 260 seconds] --- Log closed Fri Dec 14 00:00:55 2012