--- Log opened Mon Mar 04 00:00:17 2013
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02:37 <@kanzure> "University of British Columbia researchers have identified a gene in balsam fir trees that could facilitate cheaper and more sustainable production of plant-based fixatives and scents used in the fragrance industry and reduce the need for ambergris, a substance harvested from whale barf."
02:37 <@kanzure> new plan: whale barf factory.
02:38 <@kanzure> paperbot: http://www.jbc.org/content/287/15/12121.short
02:38 < paperbot> http://diyhpl.us/~bryan/papers2/paperbot/Bifunctional%20cis-Abienol%20Synthase%20from%20Abies%20balsamea%20Discovered%20by%20Transcriptome%20Sequencing%20and%20Its%20Implications%20for%20Diterpenoid%20Fragrance%20Production.pdf
02:39 < Adifex> Whale barf? I must ask before I google.
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03:29 <@kanzure> wow quinn had it bad http://www.theatlantic.com/technology/archive/13/03/life-inside-the-aaron-swartz-investigation/273654/
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04:41 <@kanzure> haha jonathan cline's tecan is accessible via heavybio.dyndns.org:8088
04:42 <@kanzure> # WARNING!  ARMS WILL MOVE!
04:42 <@kanzure> print "ROBOT ARMS WILL MOVE!!  Is this okay?  (must type 'yes') [no]:";
05:06 <@kanzure> "I haven't talked to him in..15 years or so..,I was just a MIT undergrad doing urop in the media lab, and very minimally helped him.  (It was weird; the prof was kind of absentee, and the cool kids in the lab (Thad Starner, etc) all shunned Steve, even though (or maybe because) he outclassed them all in experience and tech skills."
05:06 <@kanzure> "He never went out of his way to make it easy to replicate, or to contribute to group reference designs (which were inferior to his then current hardware)."
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06:47 <@kanzure> cthutlu: hello
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07:11 <@kanzure> "Announcing a workshop which will be the kick off meeting of the Open Source Brain initiative (http://www.opensourcebrain.org). This aims to create a public, open source repository of detailed neuron and network models from multiple brain regions and species, which can be collaboratively developed and contributed to by the whole community. The workshop will be held from May 13-15 in Alghero, Sardinia."
07:11 <@kanzure> https://github.com/OpenSourceBrain
07:12 <@kanzure> oh right weren't these the repos that i was complaining about with all the terrible python
07:12 <@kanzure> https://github.com/OpenSourceBrain/Thalamocortical/blob/master/neuroConstruct/pythonScripts/GenNetworkParallel.py
07:12 <@kanzure> https://github.com/OpenSourceBrain/Thalamocortical/blob/master/neuroConstruct/pythonScripts/L6NonTuftRS_FI.py
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08:21 <@kanzure> yashgaroth: sup
08:21 < yashgaroth> kickin' it old school
08:22 <@kanzure> did you catch http://youtube.com/watch?v=ovEghdXC4tE
08:22 < yashgaroth> psh I saw that back when it came out :smug:
08:23 < yashgaroth> it is quite accurate, from my talks with grad students
08:24 < archels> ~~ TODAY'S HEADLINE ~~
08:24 < archels> Mars may get hit by a comet in 2014
08:24 < archels> ...
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08:28 < eudoxia> all the mars rovers will be wrecked lol
08:29 < archels> the humanity
08:29 < eudoxia> .wa volume of a 20km diameter sphere
08:29 < yoleaux> sphere: diameter 20 km (kilometers): volume: (4000 pi)/3 km³ (cubic kilometers)~~4188.79 km³ (cubic kilometers); Visual representation: http://is.gd/P8SUHq; Unit conversions: 4.189×10¹² m³ (cubic meters); 4.189×10¹⁵ L (liters); 1005 mi³ (cubic miles); 1.479×10¹⁴ ft³ (cubic feet); Comparisons as volume: ~(3.2×10⁽⁻⁶⁾ ~1/310000) × volume of Earth's oceans (~1.3×10⁹ km³); ~0.34 × volume of Lake Superior (~12200 km³)
08:29 < eudoxia> .wa mass of 4188 cubic kilometers of water
08:29 < yoleaux> eudoxia: Sorry, no result!
08:30 < yashgaroth> 4.189e15 kilograms
08:30 < eudoxia> thanks yash
08:31 < eudoxia> youleaux isn't getting any botsnacks today
08:31 < eudoxia> a friend keeps telling me the comet will form proto-oceans and speed up terraforming
08:32 < eudoxia> i really doubt it will lead to anything good
08:32 < eudoxia> or useful
08:32 <@kanzure> how is it that we can only say it "may" get hit by 2014? are we missing something about its momentum?
08:32 < archels> epicycles are difficult to predict, dude.
08:33 < yashgaroth> half the mass of phobos, 3x that of deimos apparently
08:33 < eudoxia> jesus christ
08:34 < eudoxia> my friend kept saying we should smack phobos into Mars to terraform it (had this idea it would reboot Mars' magnetic field or something)
08:34 < eudoxia> now it's actually happening
08:34 < ThomasEgi> pic or it didn't happen
08:35 < eudoxia> well it will happen in like a year probably
08:35 < eudoxia> unless ejecta from the comet changes its trajectory which i doubt
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08:38 < eudoxia> >Using a Monte-Carlo method the comet shows roughly a 1 in 1250 chance (0.08%) of impacting Mars.
08:38 < eudoxia> b-b-b-but
08:38 < ThomasEgi> well.. at least we have the mars orbiter. so we get pictures, should it happen.
08:39 < eudoxia> i bet it has a shitty camera
08:39 < ThomasEgi> if it does. james cameron will probably shoot up another orbiter with stereoscopic cameras onboard. just to turn it into some spectacular movie
08:39 < ThomasEgi> well the orbiter camera is good enough to locate the rover's chute and heat shield
08:39 < ThomasEgi> so.. it isn't all that bad
08:39 < eudoxia> oh good
08:39 < ThomasEgi> fov might be a bit small.
08:40 < ThomasEgi> i want at least one wide-angle shot of the impact
08:40 < ThomasEgi> with all the debris flying around.
08:40 < ThomasEgi> and better framerates.
08:40 < ThomasEgi> so i'll place my bets on cameron
08:40 < eudoxia> maybe if you vernier the MRO left and right reaaally fast you can form a stereoscopic pair
08:40 < eudoxia> with a shitty framerate
08:42 < ThomasEgi> oh come on. this will be 2014. i expect at least stereoscopic quad-hd
08:55 < eudoxia> no time to get a probe there
09:11 <@kanzure> still haven't mastered http://stenoknight.com/plover/ploverdemo/ploverdemo.html
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15:48 <@kanzure> i think that is my fault
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16:36 <@kanzure> http://humanmetabolism.org/
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16:37 <@kanzure> http://humanmetabolism.org/?page_id=7&Abbreviation=glyc
16:37 <@kanzure> "glycerol appears in the following reactions" neat.
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16:40 <@kanzure> paperbot: http://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.2488.html
16:40 < paperbot> http://diyhpl.us/~bryan/papers2/paperbot/A%20community-driven%20global%20reconstruction%20of%20human%20metabolism.pdf
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18:49 <@kanzure> "Sent from my neural interface." pfft.
18:50 < yashgaroth> is that mac cowell's new one
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--- Log closed Tue Mar 05 00:00:18 2013