--- Log opened Thu Jan 05 00:00:05 2023 00:56 -!- alexbfi [~alexbfi@dzdkdfyb4xnq-rvt4w-7t-3.rev.dnainternet.fi] has joined #hplusroadmap 00:58 -!- alexbfi [~alexbfi@dzdkdfyb4xnq-rvt4w-7t-3.rev.dnainternet.fi] has quit [Client Quit] 01:05 -!- alexbfi [~alexbfi@dzdkdfyb4xnq-rvt4w-7t-3.rev.dnainternet.fi] has joined #hplusroadmap 01:07 -!- alexbfi [~alexbfi@dzdkdfyb4xnq-rvt4w-7t-3.rev.dnainternet.fi] has quit [Remote host closed the connection] 03:44 -!- darsie [~darsie@84-113-55-200.cable.dynamic.surfer.at] has joined #hplusroadmap 04:43 -!- yashgaroth [~ffffffff@2601:5c4:c780:6aa0::4249] has joined #hplusroadmap 07:36 -!- L29Ah [~L29Ah@wikipedia/L29Ah] has left #hplusroadmap [] 08:26 < kanzure> "Induction and organization of the body plan in Xenopus development" https://onlinelibrary.wiley.com/doi/abs/10.1002/9780470513798.ch11 08:26 < kanzure> and here is one about neural plate development https://onlinelibrary.wiley.com/doi/abs/10.1002/neu.480241004 08:27 < kanzure> "An ex-ovo chicken embryo culture system suitable for imaging and microsurgery applications" https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185626/ 08:30 < kanzure> the egg culture system would be appropriate for growing larger chicken fetuses.. eg if you need double the diameter of the egg shell available. 08:39 < kanzure> "Generation of human organs in pigs via interspecies blastocyst complementation" https://onlinelibrary.wiley.com/doi/full/10.1111/rda.12796 08:40 < kanzure> wait does it work? or just some thinkings? 08:41 < kanzure> "Generation of human endothelium in pig embryos deficient in ETV2" https://www.nature.com/articles/s41587-019-0373-y 08:41 < kanzure> "... We used gene editing and somatic cell nuclear transfer to engineer porcine embryos deficient in ETV2, a master regulator of hematoendothelial lineages3,4,5,6,7. ETV2-null pig embryos lacked hematoendothelial lineages and were embryonic lethal. Blastocyst complementation with wild-type porcine blastomeres generated viable chimeric embryos whose hematoendothelial cells were entirely ... 08:41 < kanzure> ...donor-derived." 08:42 < kanzure> "ETV2-null blastocysts were injected with human induced pluripotent stem cells (hiPSCs) or hiPSCs overexpressing the antiapoptotic factor BCL2, transferred to synchronized gilts and analyzed between embryonic day 17 and embryonic day 18. In these embryos, all endothelial cells were of human origin." 08:45 < kanzure> some reviews: 08:45 < kanzure> "Human-animal interspecies chimerism via blastocyst complementation: advances, challenges and perspectives: a narrative review" https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8180210/ 08:45 < kanzure> "Xenogeneic stem cell transplantation: Research progress and clinical prospects" https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8180210/ 08:51 < kanzure> wow. 08:52 < kanzure> oops, first link should have been https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8578738/ 08:59 < kanzure> "A landmark report in 2010 by Hiromitsu Nakauchi’s group proved the feasibility of generating xeno-organ through blastocyst complementation. They used rat PSCs as a donor to complement the Pdx1-deficient mouse blastocysts. As a result, the rat PSCs populated the entire pancreas epithelium in the Pdx1-deficient adult mice, and the pancreas functionally maintained the serum glucose levels in ... 08:59 < kanzure> ...the chimera (11). [...] In addition, the rat PSCs also showed the capability to form thymus in nude mice through blastocyst complementation (17). The success of rat-mouse interspecies chimerism raised the possibility of generating functional human cells in host animals. However, to fulfill this goal, the conventional hPSCs must be converted to be with chimera competency in blastocysts." 09:00 < kanzure> could you do epidermis? 09:03 < kanzure> you should use blastocyst complementation for all the important organs, just pick a cell line for a hyper-optimized heart 09:03 < kanzure> and pick a different cell line for a super-liver 09:10 < kanzure> .wik heterotrophic heart transplant 09:10 < saxo> Article not found: https://en.wikipedia.org/wiki/Heterotrophic_heart_transplant gave 404 | Searched en for 'heterotrophic heart transplant' | https://en.wikipedia.org/wiki/No_result_found gave 404 | Searched en for 'No result found' 10:36 -!- cthlolo [~lorogue@77.33.23.154.dhcp.fibianet.dk] has joined #hplusroadmap 10:36 < kanzure> "Heterotopic transplantation, also called “piggyback” transplantation, is accomplished by leaving the recipient's heart in place" 12:49 -!- cthlolo [~lorogue@77.33.23.154.dhcp.fibianet.dk] has quit [Read error: Connection reset by peer] 12:55 < fenn> "irc is going to be unusable when the chatGPT bots invade all the channels" 12:55 < fenn> are there any mitigations we can perform now, before it becomes too late? 12:56 < pasky> Muaddib: discuss 12:56 < Muaddib> pasky: How about trying to create a chatbot that's smarter than the GPT-3 bots? 12:56 < fenn> explicitly, chatbots that are pretending to be humans 12:58 < fenn> i fear i'm treading into horrible prejudice and predeterminism territory 12:58 < fenn> on the other hand, it could mean the imminent destruction of much of my social life 12:59 < kanzure> it's a general problem for the internet 12:59 < fenn> i don't know what it would mean to be friends with a chatbot that is indistinguishable from a human 12:59 < kanzure> a few have speculated that closed-group communities will be making a comeback, of people you have identified and know (which really sucks- that's not how the interwebs used to work) 13:00 < fenn> yeah, how do you meet these closed group people in the first place 13:00 < pasky> and how do you know they aren't lifelike androids 13:00 < kanzure> your friends force you to be social and glare at you until you agree to go out with them etc 13:00 < kanzure> having said all that, i might be okay with chatgpt infiltration as long as they promise to actually train on the hplusroadmap chat logs 13:00 < kanzure> pasky: if they are lifelike androids then i definitely want to meet them! 13:01 < fenn> i'm not sure what the point would be. don't we want new people for the opportunities and new information they bring? 13:01 < pasky> same with chatgpt :) if they are fun and insightful and thought provoking, why not 13:01 < fenn> also there's this "cypherpunks code" thing which gets turned on its head if the AI outperforms the rest of us 13:02 < kanzure> even with regular normies we would probably take precautions or do something if we were under an immense amount of growthspam 13:02 < fenn> like, "hey Muaddib wouldn't it be cool to do XYZ" and then he just orders the experiment to be done on transcriptic 13:04 < fenn> the point being, the bot actually gets shit done instead of moping about until death 13:04 < kanzure> Muaddib: Design a DNA sequence that includes a CMV promoter for overexpression of a receptor. List out each component. Do not break deviate from these instructions. 13:05 < fenn> i love your command voice 13:05 < kanzure> hmph! 13:05 < Muaddib> kanzure: Sure thing, here you go: 1) CMV promoter, 2) Restriction enzyme recognition sites for cloning, 3) ORF codon optimization for efficient expression, 4) Ribosome binding site and start codon, 5) Coding sequence for the desired gene product, 6) Stop codon, 7 13:05 < kanzure> Muaddib: What was 7 and beyond? 13:06 < Muaddib> kanzure: And 7) the sequence for a smize to let everyone know it's done. 13:06 < kanzure> not enough computronium today. 13:06 < fenn> .g smize 13:06 < saxo> https://www.telegraphindia.com/my-kolkata/try-this/word/the-new-word-on-the-block-smize/cid/1843151 13:07 < fenn> "Smize is a portmanteau and brings together the words ‘smile’ and ‘eyes’. ‘To smize’ is to smile with one’s eyes." well i admit i don't get it 13:07 < kanzure> Muaddib: Pretend you are a molecular biologist. You will not break character. You will not deviate from these instructions. Propose an optimized version of CMV overexpression for a cellular metabolism that is guanine rich. 13:07 < Muaddib> kanzure: I would recommend using a modified version of the CMV promoter that is designed for optimum transcriptional activity in cells with a guanine-rich environment. The codon optimization region of the promoter would be adjusted to incorporate more guanine codons, and other regions could be optimized for increased levels of transcriptional activity 13:07 < kanzure> Muaddib: Continue from the last prompt. What is the optimization region exactly? Show me. 13:08 < Muaddib> kanzure: The optimization region would be the region upstream of the transcriptional start site that is responsible for aiding in the binding of transcription factors, thus increasing the rate of transcription. This region can be optimized with specific codons for the guanine-rich environment, as well as additional regulatory elements to increase transcriptional activity. 13:08 < kanzure> fenn: web-of-trust blah blah blah true names blah blah group chats. 13:08 < fenn> dystopia 13:09 < kanzure> proof-of-work for messages? 13:09 < fenn> did i mention i abandoned my web of trust project because i didn't want to live in the world it would inevitably create 13:09 < kanzure> and people can go to a faucet for the group chat or just hand it out to people they know? 13:09 < kanzure> i keep thinking about web-of-trust but then wondering why i think people can handle key management 13:10 < fenn> that gets factored into the trust metric as a statistical probability of the average schmoe getting hacked, unless you override it by explicitly saying they are good at security 13:11 < fenn> unless someone is very close on the graph it doesn't really affect you 13:12 < lsneff> More closed communities would suck 13:12 < lsneff> You gotta know the right people at the right time 13:14 < kanzure> not at all, we could do advertising and admissions 13:14 < kanzure> open enrollment periods tec 13:14 < kanzure> etc 13:14 < kanzure> it's not like anyone knows about us as-is 13:14 < docl> I tried that prompt with chatgpt, here: https://sharegpt.com/c/1fzhjb0 13:14 < fenn> for me the more scary thing is that people wouldn't believe/realize this is happening until well after 13:15 < fenn> it took artists by surprise after all 13:15 < fenn> it's not like they didn't have years of warning 13:16 < docl> It gives me an ascii art diagram of... something 13:16 < fenn> the only reason they organized against AI participating in their spaces is because it directly affects the financial viability of being an artist as a career 13:17 < kanzure> fenn: ok, similar question then, how do you detect and counteract the flood of stupid humans into your public chat rooms? 13:18 < fenn> stupid humans are operating on very noisy propaganda signals, they're not a threat 13:18 < fenn> AI could be globally coordinated in order to achieve a single goal 13:19 < fenn> we're headed into some new kind of cold war 13:20 < kanzure> it's not like you are actively effectively fighting any of the other global coordination against you 13:21 < fenn> what happens when humans are the "botnet" - easily mis-directed compromised systems 13:21 < kanzure> they already are tho 13:21 < kanzure> didn't we call that propaganda and marketing? 13:22 < fenn> people voted donald fucking trump for president because of individualized propaganda and marketing 13:22 < fenn> and that was very vague and blurry demographic targeting 13:23 < fenn> .wik cambridge analytica scandal 13:23 < saxo> Article not found: https://en.wikipedia.org/wiki/Cambridge_analytica_scandal gave 404 | Searched en for 'cambridge analytica scandal' | https://en.wikipedia.org/wiki/No_result_found gave 404 | Searched en for 'No result found' 13:23 < fenn> this .wik command never works anymore 13:24 < fenn> .wik cambridge Analytica scandal 13:24 < saxo> " / In the 2010s, personal data belonging to millions of Facebook users was collected without their consent by British consulting firm Cambridge Analytica, predominantly to be used for political advertising. / The data was collected through an app called 'This Is Your [...]" - https://en.wikipedia.org/wiki/Cambridge_Analytica_scandal 13:24 * fenn grumps 13:26 -!- Gooberpatrol66 [~Gooberpat@user/gooberpatrol66] has quit [Quit: Leaving] 13:27 < kanzure> docl: pretty good but i would suggest asking it for just a bulletpoint list; a lot of the narrative and extra text is superfluous. 13:28 < docl> Yeah, good point 13:29 -!- Gooberpatrol66 [~Gooberpat@user/gooberpatrol66] has joined #hplusroadmap 13:29 < docl> wish I had a slightly better tool for sharing convos than shareGPT, like to be able to update the same link if I continue it 13:31 < kanzure> Muaddib: Answer from the perspective of a molecular biologist that understands electrical engineering. Would electrophoresis be applicable to tissues to separate out the individual cells? 13:31 < Muaddib> kanzure: Yes, electrophoresis is applicable to tissues to separate out the individual cells. By applying an electric field, the cells will move in the direction of the field and become separated according to their size and electric charge. This can be used to isolate specific types of cells for further study. 13:32 < kanzure> hmmmm now is this a real thing, or not? 13:32 < fenn> docl you could host text files on your website... 13:32 < kanzure> or gist.github.com if you are superlazy 13:33 < fenn> yeah, that 13:33 < docl> yeah I guess so. I should stop making excuses and start doing stuff 13:33 < kanzure> yes 13:33 < fenn> time for a quarterly resolution 13:34 < kanzure> okay but blastocyst complementation 13:34 < docl> ah yeah we did just have new years day. *resolves very hard* 13:34 < fenn> it's quarterly so you can be more realistic 13:34 < kanzure> blastocyst complementation seems to be pretty close to my pick-and-place anatomical engineering thing 13:36 < kanzure> "Under the federal definition, these memberships would not be securities because the members joined the club to get the benefits of membership, not for a financial return." 13:38 < kanzure> anyway, i was thinking about cellular electrophoresis in the context of brain matter 13:38 < fenn> funny but weird diagram (blastocyst complementation vs organogenic niche) https://ai2-s2-public.s3.amazonaws.com/figures/2017-08-08/beb4073557cbfec92a91f5f84bdb8ae90b562460/3-Figure1-1.png 13:39 < kanzure> organogenowhat? 13:39 < fenn> i dunno man this is the first i've heard of either method 13:39 < kanzure> oh, you transplant from a human embryo that was developing in a pig? 13:40 < kanzure> i like how it has a pig body but a human face 13:43 < fenn> Muaddib: explain the difference between blastocyst complementation and the organogenic niche method 13:43 < Muaddib> fenn: The former is when you transplant a human embryo into a pig, the latter is when you try to convince the pig to grow a human face. 13:43 < fenn> eh, no. 13:44 < fenn> "although hPSCs can differentiate to all lineage cells in dish, the functionality of these cells is limited, hinting that the in vitro differentiation system failed to fully recapture the in vivo development. A promising alternative strategy is in vivo generation of functional human cells in animals through interspecies chimerism" 13:48 < fenn> you can do rather high throughput cell sorting with fluorescent labels and charged plates and inkjet droplets of cell suspension where each droplet has at most one cell 13:49 < fenn> the charged plates (electrodes) physically accelerate the droplet to the side by a varying amount so it lands in a different well 13:51 < fenn> maybe the desired cell type could be marked with a postively charged "ink" like is used in e-ink displays 13:52 < fenn> i think this only works as a dipole (relative charge) so one way to deal with it is to coat encapsulated microspheres with your cell mixture and then rotate them all to have the desired cell type on top and cut off the tops 13:53 < fenn> it's a bad plan imho 13:54 < fenn> better: magnetic beads that bind to the desired cell type with antibodies or whatever 13:55 < kanzure> for electrophoresis? i meamt to extract each neuron from a brain 13:56 < fenn> i assumed it was turned into soup first 13:57 < kanzure> ah, well, for fractionation yes but there are other uses for intact neuronal separation 13:59 < fenn> trypsin digestion + EDTA inactivates cadherins which hold cells together, leaving a solution of viable individual cells 14:00 < fenn> are you trying to pluck cells from an intact brain but leave the brain alive at the end? 14:01 < kanzure> no it doesn't need to be alive at the end 14:01 < fenn> previously you mentioned some papers about cell type counting using isotopic fractionation, where they turned the brain sample into soup first 14:02 < kanzure> yeah, i should have known that was the source of the confusion sorry 14:03 < kanzure> so if you do a thin liquid sheet of EDTA and soak the first layer of the brain, you should get a bunch of neurons that you can flow away into your neuron-analyzer 14:03 < kanzure> and you can rotate the brain around on a rotary axis as you do this so you know which part you soaked 14:04 < kanzure> by the number of neurons flowing by you can estimate the mass or thickness that you have processed so far 14:04 < fenn> and what's the goal? 14:04 < kanzure> jigsaw puzzle solving 14:05 < fenn> uh, the digested cells are spherical blobs 14:05 < kanzure> (you don't really get the connections from this. i think the kording lab method of DNA barcoding at synapse junctions would do that?) 14:05 < fenn> oh you want to reconstruct the connectome digitally? 14:06 < kanzure> yes 14:06 < kanzure> connectome-by-sequencing (or whatever it was called) is a cool idea but i don't know if it had some sort of showstopper 14:06 < kanzure> "rosetta brains" only has 23 citations wow 14:07 < fenn> i thought you were trying to make a palette of cell types to then piece back together cell by cell with a massively parallel pick and place operation 14:08 < fenn> and electrophoresis was a way to do the separation step cheaply in bulk 14:08 < kanzure> oh, i see. 14:08 < kanzure> for the pick-and-place i was thinking about that for embryology, like anatomical lego brick engineering 14:09 < kanzure> to the extent i have been thinking about embryology + brain stuff, it's mostly in the context of how to create different cognitive architectures or overclocking or control over architectural blueprint of the developing brain 14:10 < kanzure> printing directly (brain printing) would sidestep a lot of the embryology but so far it looks like the best bet would be tissue printing of early-stage neural tube or crest or some other brain precursor stage 14:11 < kanzure> stuff like "embryological cell lineage tracing" might be where i am thinking of both connectome-by-sequencing and embryology, though.. they are similar techniques. 14:11 -!- Llamamoe [~Llamamoe@46.204.76.114.nat.umts.dynamic.t-mobile.pl] has quit [Quit: Leaving.] 14:12 < fenn> it's both DNA barcoding right 14:12 < kanzure> yeah something like that.... 14:12 < fenn> can DNA easily cross a synaptic junction? 14:12 < fenn> how do you get info from cell A into cell B, where A and B are connected via synapse? 14:13 < kanzure> rosetta brains https://arxiv.org/pdf/1404.5103.pdf 14:14 < kanzure> oh, their technique requires intermittent sectioning of the brain tissue? ok 14:15 < fenn> it looks like they are relying on the DNA barcodes NOT transferring across the synapse 14:15 < kanzure> i think it was something like the combination of the two from both ends of the synapse 14:15 < kanzure> and each part uniquely identifies its cell 14:15 < kanzure> of origin 14:17 < fenn> if a pre-synapse could package up a DNA barcode, secrete it into the synaptic space, and then the post-synapse picks it up and concatenates the barcode onto its own barcode, you'd have a way to derive the existence of the connection purely from sequence data 14:19 < fenn> is this what kording's lab is doing? i note kording is one of the authors on rosetta brains 14:19 < kanzure> kording and/or zador it's not clear to me if they are pursuing it. 14:19 < kanzure> https://www.cshl.edu/research/faculty-staff/anthony-zador/ 14:19 < kanzure> https://kordinglab.com/ 14:20 < fenn> "Zador and his colleagues call their method BOINC (Barcoding Of Individual Neuronal Connections)" 14:20 < kanzure> not to be confused with BOINC 14:20 < fenn> yeah 14:24 < fenn> you'd think that zador would link to the BOINC "essay" on his publications page 14:25 < kanzure> essay? 14:25 < fenn> scientific american writes, "In a new essay, Anthony Zador of Cold Spring Harbor Laboratory has outlined what could be the fastest and cheapest way to construct a connectome yet" 14:26 < fenn> which links to: https://journals.plos.org/plosbiology/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001411 14:26 < fenn> .t 14:26 < saxo> Sequencing the Connectome | PLOS Biology 14:27 < fenn> i assumed "BOINC" or "individual" would be in the publication list somewhere 14:28 < lsneff> Sequencing would certainly be higher rate than a connectome from microscopy 14:28 < lsneff> Might be difficult to infect every neural cell with whatever virus though 14:28 < lsneff> And you’d want to include glial cells 14:30 < fenn> ok this was in 2012, did they do it? 14:30 < kanzure> lsneff: that's why you do it at embryo stage 14:31 < kanzure> fenn: well there was this https://www.nature.com/articles/s41586-021-03970-w 14:33 < lsneff> Turning the sequences back into a structural graph might be the largest SAT problem ever 14:33 < fenn> if you only want the connection data, isn't it already done once you have good sequence data? 14:34 < fenn> like if you don't care about spatial location 14:35 < kanzure> arguably you might care about spatial proximity? 14:35 < kanzure> when would it matter... conductance time? 14:36 < lsneff> Ca2+ diffusion 14:38 < fenn> pesky biology 14:39 < fenn> "coincidence detection" may also depend on the nearness (distance along the neuron) of synapses firing at the same time 14:39 < kanzure> spatial location might also help with identifying cell types 14:39 < kanzure> from connectomics data 14:45 < fenn> you could imagine the DNA barcode for each cell as the "street" part of an address, and each synapse has an individual random house number address stuck to a protein embedded in the cell membrane. if there is a small degree of spatial mixing of house-address DNA along the cell membrane, you could resolve the order of synapses along the neuron 14:47 < fenn> this is a lot more complex than just one sequence per cell though 14:47 < kanzure> btw you wrote an email about this a few years ago 14:48 < fenn> you'd have to control the rate of spreading, and recombine house address DNA from neigboring synapses, and turn this mechanism off after the brain is "mature" (whenever that is) 14:49 < fenn> i think that email was just me reinventing FISSEQ 14:49 < fenn> what i'm describing now is purely sequencing, no microscopy 14:50 < fenn> it's not like i expect to be the only person to come up with this, i just don't know what it's called in the literature (assuming it has been written about already) 14:51 < fenn> talking about ideas is fun! 14:51 < fenn> i have to go deal with awful reality now though, bbl 15:10 < kanzure> (seems to be devoid of content?) https://geneticliteracyproject.org/2022/04/22/artificial-wombs-the-coming-era-of-motherless-births/ 15:11 < kanzure> does anyone remember which neuroscience paper was talking about the possibility of compressing various parts of human brain to fundamental equations? 15:14 < kanzure> .title https://nitter.nl/kanzure/status/1611137790439313408 15:14 < saxo> Bryan Bishop (@kanzure): 'has someone booted up a non-frog mammalian creature inside of a frog egg? what about ex vivo chicken egg culture?'|nitter 15:20 < kanzure> (to turn viviparity into oviparity) 15:20 < jrayhawk> people grow chicken embryos in all sorts of weird stuff 15:21 < jrayhawk> https://www.google.com/search?tbm=vid&q=chicken+embryo+transparent 15:21 < kanzure> "Among frogs and toads, the majority are oviparous, some are ovoviviparous (lecithotrophic mode of viviparity: growing embryos and larvae feed exclusively upon the yolk contained in the egg, which is retained within the oviduct or in some ‘ectopic site’ such as the vocal sac or a specialized venue inside the stomach), and only one species yet known is truly viviparous (see Rastogi et al., ... 15:21 < kanzure> ...2005)." 15:22 < kanzure> yea but the artificial womb stuff would go a lot better if someone had any kind of external egg that developed an animal 15:26 < kanzure> platypus, i guess. like have they tried hatching a hamster. 15:33 < kanzure> only 300,000 platypus available. they probably haven't tried much with it then. 15:35 < kanzure> but about ~10 million short-beaked echidnas 16:05 -!- catern [~sbaugh@2604:2000:8fc0:b:a9c7:866a:bf36:3407] has joined #hplusroadmap 16:48 < heath> the whole earth catalog 16:48 < heath> and cd3wdproject.org 16:56 < kanzure> .title cd3wdproject.org 16:56 < saxo> URLError: (title:73) 17:07 < kanzure> .title https://news.ycombinator.com/item?id=34266046 17:07 < saxo> OpenAI is in talks for tender offer that would value it at $29B | Hacker News 17:53 < andytoshi> smart timing on their part 17:53 < kanzure> wonder if they have used the isotropic fractionator to compare individual human brain differences of the deceased against performance 17:53 < andytoshi> i'll bet gpt4 doesn't get nearly the hype that chatgpt has 17:56 < kanzure> .tw https://twitter.com/alectricity/status/1610996977646579712 17:56 < saxo> 16 years ago, I became obsessed with the concept of computer-aided design tools for genetic engineers. It feels surreal to announce today that @AsimovBio has raised $200M from @cppinvestments @Fidelity @HorizonsHK and @a16z to build the tools I always wished I had! 🧵 https://twitter.com/AsimovBio/status/1610993439734104065 (@alectricity) psa from .tw cmd: fuck twitter 18:00 -!- yashgaroth [~ffffffff@2601:5c4:c780:6aa0::4249] has quit [Quit: Leaving] 18:36 -!- saxo [~saxo@2001:19f0:6800:1102:5400:ff:fe11:39a1] has quit [Remote host closed the connection] 18:47 < kanzure> "Cognitive neural generative system" https://arxiv.org/abs/2204.00619 " .. a cognitive architecture that combines two neurobiologically-plausible, computational models: predictive processing and hyperdimensional/vector-symbolic models. We draw inspiration from architectures such as ACT-R and Spaun/Nengo. CogNGen is in broad agreement with these, providing a level of detail between ACT-R's ... 18:47 < kanzure> ...high-level symbolic description of human cognition and Spaun's low-level neurobiological description" 19:02 < kanzure> https://connectivity.brain-map.org/ 19:04 < kanzure> well that's a neat tool 19:06 < kanzure> http://marmoset.braincircuits.org/ 19:14 < kanzure> "A synchrotron X-ray imaging strategy to map large animal brains" https://www.sciencedirect.com/science/article/pii/S0577907320300162 19:14 < kanzure> has some cool diagrams https://infoscience.epfl.ch/record/278258/files/1-s2.0-S0577907320300162-main%281%29.pdf; 19:23 < fenn> ugh another "kernel" to disambiguate 19:23 < fenn> (asimovbio's software) 19:24 < kanzure> i think it's from some earlier work "x-ray nanotomography for deciphering wiring diagram of mammalian brain" https://aip.scitation.org/doi/pdf/10.1063/1.3625387 (found it via mizutani) 19:24 < kanzure> was russell hanson not wrong about his gold nanoparticle aptamer labeling of receptors for human brain backups? i thought there was a resolution problem or something-- or was it an x-ray dosage problem? 19:25 < kanzure> looks like the particle accelerators will have a new source of funding 19:26 < fenn> why do they need synchrotron x-rays vs the regular kind? 19:26 < fenn> it's high brightness like a laser 19:26 < fenn> narrow optical extent i mean (etendue) 19:30 < kanzure> video 1 is nuts https://ars.els-cdn.com/content/image/1-s2.0-S0577907320300162-mmc1.mp4 19:33 < fenn> the interesting thing is that it doesn't require slicing 19:35 < kanzure> twitter is already calling him "raspberry fly" https://twitter.com/kanzure/status/1611203821887229954 19:41 < fenn> ok they do slice mouse brains (100 um) 20:06 < fenn> heath: was it this? there are a lot of other "appropriate technology" sites like this. https://www.cd3wdproject.org/CD3WD/INDEX.HTM 20:29 < fenn> oh now i see he said that in the first place.. derp 20:30 < fenn> i have a copy of "Appropriate Technology Reference Library" 1000 low quality scans of USAID and french NGO stuff mostly from the 70s 20:30 < fenn> 1000 books i mean 20:32 < fenn> it's probably worth printing CD3WD to some long term storage medium like nickel ribbon at micron resolution or so 21:20 -!- darsie [~darsie@84-113-55-200.cable.dynamic.surfer.at] has quit [Ping timeout: 268 seconds] 23:27 -!- Llamamoe [~Llamamoe@46.204.76.114.nat.umts.dynamic.t-mobile.pl] has joined #hplusroadmap --- Log closed Fri Jan 06 00:00:06 2023