2008-07-08.log

--- Day changed Tue Jul 08 2008
kanzureoh, it's an actual wheel00:36
kanzurerevolving repositories?00:36
kanzurehttp://en.wikipedia.org/wiki/Technology_of_the_Song_Dynasty#Revolving_repositories00:36
kanzurenow if only they included revision control00:37
kanzureI like the bookwheel.00:38
kanzurescrew bootstrapping00:39
kanzureI'll just go build the gene expression analysis machine for human brain slices00:39
kanzurethat's basically the information I need for the attention augmentation system00:40
kanzureand then from there everything seemingly falls into place00:40
kanzure'We are proposing placing the finished R2D2 droid in an "arena" and 00:43
kanzureallowing folks to drive the droid and control all its functions (sounds, 00:43
kanzurelights, movements) via remote-control.00:43
kanzureThe issue we're trying to figure out now is how do we make it so the 00:43
kanzuredroid can "sense" the edges of its "enclosure" and not go "out of 00:43
kanzurebounds" when being driven by the "guest driver". The idea would be to 00:43
kanzure"disconnect" remote control from the driver long enough to reorient the 00:43
kanzuredroid to point away from the arena barrier, then give control back.'00:43
kanzurehttp://www.notepad.org/Drive-a-Droid6b.pdf00:43
kanzuresolved it00:53
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-!- Topic for #hplusroadmap: Semi-intro http://www.youtube.com/watch?v=ZXKbzbeipmI http://diybio.org/ http://openwetware.org/ | diy bio toolkit: http://biohack.sf.net/ | Automated societal knowledge (put it to work): http://heybryan.org/exp.html | Channel wiki: http://heybryan.org/mediawiki/ | F/OSS perspectives on Kurzweil: http://heybryan.org/fernhout/01:16
-!- Topic set by kanzure [] [Sat Jul 5 23:09:51 2008]01:16
[Users #hplusroadmap]01:16
[ fenn ] [ kanzure] [ procto ] [ willPow3r] 01:16
[ freer] [ Overand] [ Splicer] [ ybit ] 01:16
-!- Irssi: #hplusroadmap: Total of 8 nicks [0 ops, 0 halfops, 0 voices, 8 normal]01:16
-!- Channel #hplusroadmap created Sat Mar 22 15:44:12 200801:17
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ybitthis is a test message01:23
kanzurewhy01:28
* kanzure is downloading the human cortex02:01
* willPow3r hopes that doesn't involve decapitation02:01
kanzureYou're next.02:02
willPow3rits a good thing you don't know that i live in san diego then02:02
kanzuremaybe I'll just punch you through the monitor :)02:18
kanzurebrain still downloading02:18
kanzureit's a lot of XML data02:18
kanzureconveniently referenced to brain region02:18
kanzurewith respect to the gene IDs out there on the net02:19
willPow3rthe brain uses xml for memory storage?02:26
kanzureapparently :)02:33
willPow3rgood thing it's not proprietary02:35
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kanzurecolorimetric in situ hybridization02:48
kanzureI don't know how they are getting regional information out of this.02:48
kanzureIt's not in the XML. But it appears on the HTML docs.02:48
kanzureguess I'll have to fetch the specimen metadata too02:50
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kanzureLooks like the whole of the geek community is rejoicing about Gates' leaving.09:36
kanzurewoah, the laptop's processor is running at 87 degrees celsius?12:16
kanzurehttp://humancortex.alleninstitute.org/has/siv?imageId=79479109 <--- the human cortex is on rails12:41
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kanzurehttp://www.cdc.gov/od/ohs/Ergonomics/compergo.htm funny how computers qualify as a source of disease at the CDC.12:52
kanzurehttp://neurocommons.org13:35
kanzurefenn: http://www.w3.org/TR/2008/NOTE-hcls-kb-20080604/13:41
nshlooks interesting (neurocommons)13:42
nshi don't click w3c links :-)13:43
kanzurethen at least click this13:43
kanzurehttp://hcls.deri.ie/hcls_demo.html13:43
kanzure'The following queries access a SPARQL endpoint hosted at DERI. The underlying triplestore contains over 325 million RDF triples of biomedical information. The information covers a large array of biomedical knowledge: from basic molecular biology over literature annotation up to anatomy and physiology.'13:43
nshmmmm13:47
nshcool!13:47
kanzureJust got an email from someone signed "Edwin Wise, Rogue Technologist"13:50
nsha least he wasn't a rouge technologist13:51
nshselling you musical tales of romance and blusher13:51
ybitdid anyone see this?15:01
ybithttp://www.technologyreview.com/Biotech/21042/?a=f15:01
* nsh hadn't; thanks15:06
kanzurehttp://heybryan.org/shots/2008-07-08.png15:21
kanzureybit: What is it?15:21
kanzureyes15:21
kanzurewlrdpc blogged it and yelped about it in here a few weeks ago15:21
kanzurethis might be a different one15:22
kanzureanyway, I'm working off of http://humancortex.alleninstitute.org/ right now15:22
kanzureI'm stealing most of their data15:22
kanzureand cooking up something pretty fancy ;-)15:22
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kanzurefenn: CPAN uses YAML apparently.15:58
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kanzureinteresting fellow: http://www.alleninstitute.org/content/paul_wohnoutka.htm17:30
kanzurehttp://www.labautomation.org/journal/archives/jala12.6.cfm17:32
kanzurehttp://www.markboguski.net/neurogenomics.htm <-- the guy who found Paul17:34
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kanzureBeep.18:30
* nsh reads about the simulation argument18:33
* fenn reads about the hanford nuclear site18:39
* nsh dpesnmhanford18:43
nsh*doesn't like the sound of that18:43
kanzurehttp://esw.w3.org/topic/HCLS/Banff2007Demo?action=AttachFile&do=get&target=Banff2007Part2.pdf18:45
kanzureyou want to click it18:45
nshDuring the Cold War, the project was expanded to include nine nuclear reactors and five massive plutonium processing complexes, which produced plutonium for most of the 60,000 weapons in the U.S. nuclear arsenal.[2][3]18:45
nsh:-/18:45
nshhmmm18:46
kanzureI am a moron.18:47
kanzureWho are these Science Commons guys?18:47
nshresearchers that have been attracted to the project?18:50
nshoh, science commons is different to scientific commons18:51
kanzurewhat the hell? they also run creativecommons.org18:51
nshwell, it's a project of creative commons18:52
nshwhich is, by now, a large movement18:52
nshprobably getting close to fsf proportions18:52
kanzureinteresting18:52
kanzureI thought 'creative commons' existed before the fsf18:52
nshnah, less than five years old, i think18:55
nsh"The initial set of Creative Commons licenses was published on December 16, 2002.[5]18:56
nshCreative Commons was officially launched in 2001 18:56
nsh-WP18:56
kanzurehuh.18:56
kanzureI never actually looked into it18:56
kanzureI thought it was very similar to "public domain"18:56
nshpublic-domain with teeth18:57
* nsh is past caring about copyright law though18:57
kanzureyes, but take a look, they 18:57
kanzurethey have RDF/XML metadata for 'works'18:57
kanzureso that when those who do care about licensing,18:57
kanzure*licensing throw up this 'license'18:58
kanzurewhat they are really doing is throwing up metadata18:58
kanzurehaha, it's a slick move18:58
kanzureI'm wondering if sciencecommons.org is the real deal18:59
kanzurethey do mention the acceleration of science via automation18:59
kanzurehowever, all of this semantic metadata 18:59
kanzurefalls under the same arguments that we were mentioning in here a few months ago, I think18:59
kanzurein that they aren't exactly integrated with http://expo.sf.net/ although they certainly should be18:59
kanzureI'd prefer it if it were all YAML and code floating around instead of just raw data that requires a human to implement each time they come across it19:00
kanzureand therefore it sucks19:00
* kanzure feels better19:00
nshthat's the problem with the internet-as-ecosystem19:00
nshit's inherently impossible while there continues to be "too much space"19:00
kanzurewhat ?19:00
kanzurewhy is it impossible?19:00
nshthere is no a priori requirement of successfull interaction19:00
kanzurelook, when you make a new SQL table,19:00
kanzureupload the SQL used to create it, damn it19:01
nshwhen everything is able to work in isolation19:01
kanzureand when you have a database, give me read access to the daemon, you jerk19:01
* nsh nods19:01
nshbut there's no requirement for these things19:01
kanzuredoesn't matter19:01
nshin meatspace, everything is forced to interact19:01
kanzureit can be implemented very easily in the tools19:01
nshthere's no comparmentalisation outside of geology19:01
kanzureruby on rails lets you 'scaffold' the exported structure of a mysql (and many other forms of) table19:02
kanzurejust an example off the top of my head19:02
kanzurebut in general those structures should be an 'object'19:02
kanzurei.e., a library module that you can modprobe19:02
kanzureobviously you don't need it in your kernel space19:02
kanzureyou need it in userspace19:02
kanzurebut the modprobe illustration works ;-)19:03
* nsh checks for running tap19:03
kanzure?19:03
nshsorry, really annoying plumbing in this apartment19:03
nshso yeah, modularity should be implicit19:04
kanzureI've found their base of operations, of sorts,19:05
kanzureand it's at the w3's mailing lists19:05
kanzureso my ideas there might be unwelcomed19:05
nshwhose?19:05
kanzurew3c's19:05
nshoh, good luck19:06
kanzurehttp://lists.w3.org/Archives/Public/public-semweb-lifesci/19:06
kanzureare they stubborn?19:06
nshpeople who sit on commitees are the type of people who get asked to sit on commitees19:06
* nsh shrugs19:06
nshnot people i trust to build the future19:07
nshsure, ten years ago19:07
nshwhen it was all hackers19:07
kanzurethese are the same people who did the brain map19:07
* nsh nods19:07
nshi think my prejudice does not cover the people on this list19:07
nshthey are just using the tools19:07
kanzure"JOIN: Bryan Bishop. Hi. Here's my idea to make all of this better. kthnxbai"19:08
nshgo for it19:08
nshmailing lists annoy me :-/19:09
nshtoo much clicking19:09
kanzurewhy's that?19:09
nshclicking is the bane of my internet experience19:09
kanzureuh19:09
kanzurehave you tried a mail client19:09
* nsh smiles19:10
kanzure?19:10
kanzureI've reduced it down to one click per message19:10
nshi don't think this software allows one to download the archive19:10
kanzurehttp://lists.w3.org/Archives/Public/public-semweb-lifesci/mboxes/19:11
nshprotected19:11
kanzureuhh19:11
* nsh has no W3C account19:12
kanzurewhy the hell would there even be W3C accounts19:12
kanzurethis sucks19:12
nshbeauorocracy19:13
nshhowever it's spelt :-)19:13
nshbureaucracy19:13
* nsh hates french words19:13
Splicerthey should be boycotted... oops19:19
* nsh chuckles19:20
nshboycott, apparantly, is from an Irish name19:21
nsh1880, from Irish Land League ostracism of Capt. Charles C. Boycott (1832-1897) land agent of Lough-Mask in County Mayo, who refused to lower rents for his tenant farmers. Quickly adopted by newspapers in languages as far afield as Japanese (boikotto). The family name is from a place in England.19:21
nshcott as a place name suffix may well be normal, though19:21
nsh*norman19:21
nshnope, saxon19:22
nshfrom which, i assume, we get the word "cottage"19:22
Splicerdidn't know19:24
Splicerare you finish or staying there?19:24
Splicer*finnish19:24
nshyes.19:25
nsh(i have dual(british-finnish)nationality and have just completed voluntary work as national service)19:26
Spliceryou mean like conscription?19:26
nshindeed19:26
Splicerhehe19:26
Splicerdragsvik or some other place?19:27
nshi was conscripted to the finnish defense forces in 2004 (technically, it was voluntary; you haven't met my mother though)19:27
nshafter going awol for a few years, i decided to come back and do civilian service19:27
nshwhich lead to my current job, in a genetic lab19:27
nsh*genetics19:27
nshdragsvik doesn't sound very finnish :-)19:27
Splicerit's the swedish regiment... you probably know19:28
Spliceri changed nationalities when I started getting papers19:28
Splicerso I did that stuff in sweden19:29
nshah, cool19:29
nshyeah, your uniforms were funnier-looking than ours, iirc19:30
Spliceryeah.. that was why19:30
Splicerright now the finns are kindof the de facto swedish defence19:31
nshunfortunate geography in that regard :-)19:32
nshhttp://blog.karppinen.fi/2008/07/apple-just-gave-out-my-apple-i.html  19:32
nsh^ ouch pwnt19:33
Splicerclassic hacking19:34
kanzurensh: Hm.23:03
kanzurehttp://swhack.com/logs/2007-05-0623:03
kanzureit mentions irc.w3.org, which I just /connected to 23:03
kanzurecoincidence? :)23:03

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