| --- Day changed Thu Jul 10 2008 | ||
| kanzure | you know what, I bet 23andme would be willing to fund that | 00:04 |
|---|---|---|
| kanzure | aha | 00:05 |
| kanzure | it's in /home/bryan/cache/genomes/deCODEme_scan.scsv | 00:05 |
| kanzure | erm | 00:05 |
| kanzure | .csv | 00:05 |
| kanzure | 31 MB. hm. | 00:09 |
| kanzure | 'Where "Name" is the official symbol of the SNP taken from dbSNP (www.ncbi.nlm.nih.gov, and the Cambridge reference sequence, Public SNP source, dbSNP 128)' | 00:11 |
| kanzure | http://www.snpedia.com/index.php?title=DeCODEme | 00:11 |
| kanzure | http://www.ncbi.nlm.nih.gov/projects/SNP/ | 00:13 |
| kanzure | http://demo.decodeme.com/genome_browser | 00:14 |
| kanzure | yep | 00:16 |
| kanzure | http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp&cmd=search&term=rs4477212 | 00:16 |
| kanzure | that's from Jong Bahk | 00:16 |
| kanzure | http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 | 00:17 |
| kanzure | ftp://ftp.ncbi.nih.gov/snp/database/organism_data/human_9606 | 00:18 |
| kanzure | uh | 00:18 |
| ybit | hmm, anyone want the neverness pdf? | 02:42 |
| ybit | i just converted it after changing it to a readable font | 02:42 |
| ybit | perhaps i should now | 02:42 |
| ybit | guess anyone can do this themselves | 02:43 |
| ybit | i forget i'm not dealing with the people i typically have to work with | 02:43 |
| ybit | but if you are lazy, then msg me :) | 02:44 |
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| kanzure | ybit: uhm, on another note | 03:20 |
| kanzure | the font that it displays in | 03:20 |
| kanzure | is your default font | 03:20 |
| kanzure | you can change this | 03:20 |
| kanzure | depending on your browser it's probably very simply in the preferences | 03:21 |
| kanzure | I like to read in Tmes New Roman | 03:21 |
| ybit | Century Schoolbook L is what it was changed to | 03:24 |
| * ybit goes to bed | 03:24 | |
| ybit | 'night | 03:24 |
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| kanzure | http://video.google.com/videoplay?docid=-1828931383490669655&q=blender+conference+2006 'At the Blender conference, Alberto Cardona discussed his methods for using Blender to reconstruct serial sections of Drosophila brains and annelid ganglia/connectives. I don't begin to understand the algorithms, but it seemed promising (I am also a neuroscientist). Google for videos of "Blender Conference 2006" to view his presentation.' | 06:32 |
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| kanzure | a brain in a blender doesn't sound good | 06:56 |
| kanzure | but I should go email Alberto | 06:56 |
| * nsh smiles | 06:58 | |
| kanzure | hm, he mentions git | 06:59 |
| kanzure | sadly he's carving out the microtubules by hand | 07:06 |
| kanzure | so he goes through each layer and selects it by hand | 07:06 |
| kanzure | and then builds this up into vertices/vectors, and then generates a 3D wireframe/mesh from that | 07:06 |
| kanzure | sucks, but it sounds like he's been looking for something slightly more uh | 07:06 |
| kanzure | practical. | 07:06 |
| nsh | hmm | 07:08 |
| kanzure | maybe some extra genetic markers | 07:10 |
| kanzure | remember the genetic recombination in the mouse brain paper? | 07:10 |
| kanzure | it was lit up like a christmas tree in there | 07:10 |
| * nsh fails to recall, would appreciate reference | 07:11 | |
| kanzure | uhm | 07:11 |
| kanzure | brainbow | 07:11 |
| kanzure | http://www.livescience.com/animals/071031-brainbow.html | 07:11 |
| nsh | got it | 07:11 |
| kanzure | http://www.hms.harvard.edu/research/brain/methods.html | 07:12 |
| kanzure | possibly more trustworthy source: http://www.npr.org/templates/story/story.php?storyId=15886895 | 07:12 |
| kanzure | http://code.google.com/apis/earth/ | 07:14 |
| kanzure | yarr, only available on windows | 07:14 |
| kanzure | I'll consider sleeping now. | 07:14 |
| * nsh watches the blender video | 07:22 | |
| nsh | hmm | 07:22 |
| nsh | he used hamming distance for vectors | 07:22 |
| nsh | or something similar | 07:23 |
| * nsh looks for paper | 07:24 | |
| kanzure | if you find anything please share | 07:38 |
| nsh | links from http://www.mcdb.ucla.edu/Research/Hartenstein/acardona/science.html | 07:40 |
| nsh | http://download.blender.org/documentation/bc2006/cardona_blender_conf.pdf | 07:41 |
| nsh | ^ the blender paper | 07:41 |
| kanzure | 600 GB dataset | 07:42 |
| kanzure | well, shit | 07:42 |
| kanzure | that's for a flybrain | 07:42 |
| kanzure | http://www.mcdb.ucla.edu/Research/Hartenstein/acardona/reading_notes.html <-- hahah | 07:43 |
| kanzure | this is much like my own notes on, well, everything | 07:43 |
| kanzure | he cites Markram | 07:43 |
| kanzure | and Kurzweil | 07:44 |
| nsh | mmm | 07:44 |
| kanzure | and Peter Norvig. Very interesting. Peter is the guy behind http://goertzel.org/ - Goertzel's funding | 07:44 |
| kanzure | or he's the guy doing some SIAI stuff. I forget. | 07:45 |
| nsh | rings a bell | 07:45 |
| nsh | oh, he's director of research at google | 07:45 |
| kanzure | he's moving to Zurich | 07:46 |
| kanzure | oh, sorry | 07:46 |
| kanzure | yes | 07:46 |
| kanzure | most awesome job in the galaxy | 07:46 |
| nsh | very likely | 07:46 |
| * nsh has to go vortex some flies | 07:46 | |
| kanzure | but really | 07:46 |
| kanzure | nsh, are you near Zurich? | 07:46 |
| nsh | not particularly | 09:28 |
| nsh | 2,340km by road | 09:29 |
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| kanzure | stupid geography | 11:34 |
| kanzure | http://www.semantic-systems-biology.com/biogateway/querying | 12:01 |
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| kanzure | http://heybryan.org/shots/2008-07-10_wine_brainbow_fail.png | 14:17 |
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| kanzure | http://heybryan.org/shots/2008-07-10_wine_brainbow_fail.png | 14:25 |
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| ybit | still looks the same as the last ;) | 14:31 |
| kanzure | eh | 14:31 |
| kanzure | pidgin died and fell out of the air | 14:32 |
| ybit | kopete shoot it down? | 14:32 |
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| kanzure | http://www.educationanddemocracy.org/FSCfiles/C_CC2a_TripleRevolution.htm | 14:34 |
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| kanzure | http://www.horsepigcow.com/2007/05/28/losercamp/ | 16:20 |
| kanzure | hah | 16:20 |
| kanzure | a 'fail camp' | 16:20 |
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| kanzure | Beep. | 17:40 |
| Splicer | beep | 17:42 |
| kanzure | k | 17:42 |
| kanzure | What's going on? | 17:42 |
| Splicer | just bought a name cause i liked the sound of it | 17:43 |
| kanzure | ? | 17:45 |
| Splicer | a .com name... it's not rippled through yet | 17:45 |
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| kanzure | http://www.youtube.com/VernGraner | 19:01 |
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| fenn | nasa tv is kinda interesting right now | 19:24 |
| willPow3r | words of a true nerd. | 19:25 |
| willPow3r | joke. juust a joke. | 19:28 |
| fenn | lol there is an SCA member/video game developer from austin on this flight | 19:42 |
| fenn | as they are hacking away at the spacecraft with a knife | 19:44 |
| Splicer | how come the american is in charge of sewing up the russian module? | 19:46 |
| fenn | they're both russians, the american is a translator on the ground | 19:48 |
| fenn | it's kinda confusing because she's speaking for both of them | 19:48 |
| Splicer | aaah..hehehe | 19:49 |
| Splicer | I was thinking she was very cool | 19:49 |
| Splicer | she really sounds like she takes part | 19:50 |
| willPow3r | are you watching on tv or streaming? | 19:56 |
| Splicer | I'm listening to audio only on nasa tv | 19:57 |
| fenn | you're probably missing avisynth.dll right? | 20:01 |
| fenn | go to mplayerhq.hu and get the codec pack | 20:01 |
| willPow3r | oh man, i really don't want to install realplayer on linux | 20:03 |
| fenn | you dont have to, mplayer works fine | 20:03 |
| Splicer | I'm actually running an xp... if there is a video I think the reason I'm not getting it is because my p2p downloads use the bandwidth. | 20:05 |
| Splicer | I really like this pic, it's taken after the landing of a russian capsule: | 20:06 |
| Splicer | http://www.novosti-kosmonavtiki.ru/content/photogallery/gallery_152/pages/IMG_8849.htm | 20:06 |
| willPow3r | hah yep | 20:06 |
| willPow3r | sweet | 20:06 |
| Splicer | Russians can often have a cool pragmatic outlook on things | 20:08 |
| willPow3r | is there a non-translated version? | 20:09 |
| fenn | i like this one http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Soyuz_TMA-9_launch.jpg/398px-Soyuz_TMA-9_launch.jpg | 20:11 |
| Splicer | good pic | 20:13 |
| Splicer | I really like that thrusterdesign for some reason | 20:14 |
| willPow3r | russian tv news is amazing | 20:22 |
| willPow3r | they actually show somewhat unbiased reporting on iran | 20:24 |
| willPow3r | and they have way-hot female news anchors | 20:26 |
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| wrldpc | Greetings from DIYBio. | 21:56 |
| wrldpc | we're running the electrophoresis experiment ... i cant locate the doc ... | 21:59 |
| wrldpc | it's an o'reilly piece ... if anyone has that link i'd appreciate it ... I'm going to cross-post this request to diybio | 21:59 |
| wrldpc | bishop you're an AI. | 22:01 |
| wrldpc | :) | 22:01 |
| wrldpc | bryan r u there? | 22:01 |
| wrldpc | health. | 22:04 |
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| ybit | the font in my tty screens is WAY too large, how can i adjust it? also, when booting up, it doesn't show anything, just a blank screen and it takes forever to load as opposed to when i select recovery mode in the grub menu | 23:26 |
| ybit | in the grub.lst file, i removed quiet | 23:26 |
| ybit | so, i don't know what's going on when it boots showing nothing | 23:27 |
| ybit | holy crap | 23:31 |
| ybit | wrong channel :P | 23:31 |
| ybit | sorry everyone | 23:31 |
| ybit | but hey, if anyone knows an answer that'd be nice | 23:31 |
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