2008-09-12.log

--- Day changed Fri Sep 12 2008
kanzurehttp://heybryan.org/camera/aws/view.html <-- I feel old.01:15
kanzurejust got those photos from some very, very old friends01:16
bkeroEr01:17
bkerokanzure: Have you ever used http://www.biosql.org/wiki/Main_Page ?01:27
bkeroApparently some people set it up and populate it with the entire NCBI taxonomy set.01:27
kanzureYummy.01:28
kanzureNCBI only releases their dataset to you if you fill out a few forms.01:28
kanzureI guess I have somewhat legitimate reasons now, but it's still annoying.01:28
bkeroHow about the entire GenBank or EMBL or Swissprot public01:29
kanzureSwissprot?01:29
kanzureEMBL?01:29
kanzureBut yes, I'd like to torrent GenBank.01:29
bkerogoogle is your friend :)01:29
bkerohttp://www.embl.de/01:29
kanzurehttp://expasy.org/sprot/01:29
kanzureyou know what, fuck this01:30
kanzureI can spider genbank.01:30
bkerolol01:30
bkeroHow big do you think genbank is01:30
bkero?01:30
kanzureMeh.01:30
kanzurehttp://www.ncbi.nlm.nih.gov/Ftp/01:30
kanzureWoah, this isn't bad.01:31
kanzureftp://bio-mirror.net/biomirror/genbank/01:31
kanzureftp://bio-mirror.jp.apan.net/pub/biomirror/genbank/  (Japan)01:32
kanzure        ftp://bio-mirror.kr.apan.net/pub/biomirror/genbank/  (Korea)01:32
kanzure        ftp://bio-mirror.sg.apan.net/biomirrors/genbank/     (Singapore)01:32
bkeroThat's maybe 1TB?01:32
kanzureHow much of it is unique?01:33
kanzureI can't quite tell the difference between the datasets there except the filename, which isn't helpful.01:33
bkeroYea01:33
kanzureftp://ftp.ncbi.nih.gov/genbank/genomes/H_sapiens/01:33
kanzureFor instance,01:33
bkeroftp://bio-mirror.net/biomirror/genbank/README.genbank01:33
kanzure94 MB, and then a 1 GB file01:33
kanzureYes, I read the readme.01:33
kanzurefoo01:33
bkeroJESUS01:33
bkeroThe files in this directory comprise GenBank Release 167.0, in the01:33
bkeroGenBank flatfile format.01:33
kanzurehs_phs0.fna.gz    Survey sequence (approx 0.5 - 1 x coverage)01:34
kanzurehs_phs1.fna.gz    Unordered contigs (each >2kb)01:34
kanzurehs_phs2.fna.gz    Ordered contigs (each >2kb)01:34
kanzurehs_phs3.fna.gz    Finished sequence01:34
kanzureHeh.01:34
bkeroLooks like GenBank is pulling in EMBL data01:34
kanzureAll of them are the whole release? Bah ..01:34
bkeroAt least nucleotide bases can be 2-bit bit. :)01:35
kanzure20 minutes to get a gigabyte. Meh. I guess it's not life-or-death.01:35
kanzureWhat type of down/up do you get at Intel?01:35
bkeroIntels connection is shit01:36
bkeroAlthough I have an I2 connection at oregonstate.01:36
bkeroBouncing between 600 and 1.2MB01:36
kanzureBah.01:37
kanzureBut at least you have clusters.01:37
bkeroHeh01:37
kanzuredon't tell me that's not quite true either ..01:37
bkeroactually01:38
* kanzure groans01:38
bkerobio-mirror.net = magpie.bio.indiana.edu01:38
kanzureright01:38
bkeroMy friend runs the supercomputer on campus there.01:38
kanzureHow super is it?01:38
bkeroMainframe super01:38
bkeroIt's on the top 500 list01:38
bkerohttp://www.top500.org/site/systems/87601:39
kanzureHeh, they give the top500 in XML format on the site01:41
bkeroI can probably get him to send it to you. :P01:41
kanzurethe whole cluster?01:41
bkeroNo, the data from the ftp01:41
kanzurethat's not quite as exciting01:41
bkerolol01:41
bkeroYou want a cluster?01:41
kanzureunless he can get it to me in less than the 13 minutes remaining01:41
kanzureYes, especially an exponentially growing cluster if you would01:41
kanzuremaybe a supercluster01:41
bkeroI can get quad cores with 4gb of ram for less than $500 a node01:42
kanzurehttp://heybryan.org/clusters.html01:43
kanzurenow that /me thinks about it I should have kept the superclusters01:43
bkeroStrike that, $400 per node01:43
kanzurenode != just the microprocessor ?01:44
bkeroNo01:44
kanzureThen why mention the ram?01:44
bkeroNode = one commodity "computer"01:44
kanzure!= means "not equal"01:44
kanzureanyway01:44
kanzureAwesome.01:44
kanzureI wish you would have mentioned that a few months ago.01:44
bkeroAww, did you ahve an opportunity?01:44
kanzureNo, I wasted a large chunk of cash on a new box.01:45
bkeroYea.  These boxes have onboard video, and no hard drives...01:45
kanzurejust a little over double ..01:45
kanzureoh01:45
kanzureWell then. Nevermind.01:45
bkeroWow, damn, I hope you got something good.01:45
bkero$550 would get you good video and a 500gb01:46
kanzure2 TB, four video cards, eight monitors, quadcore, 4 GB ram, ..01:46
bkerowhat01:46
kanzure?01:46
bkeroIs that what you got?01:46
kanzureyes01:46
bkeroAbsurd01:47
kanzureOverpriced?01:47
bkero8 monitors?01:47
kanzureHeh.01:47
kanzureCRTs.01:47
bkerooh01:47
kanzureSo it was cheap.01:47
bkeroGod01:47
bkeroSO MUCH POWER DRAW01:47
bkeroand SO MUCH EYE CANCER01:47
kanzureCANCER01:47
* kanzure has to boot up with a radiation suit01:47
bkeroBuy one of these01:48
bkeroand tell me how much it draws01:48
bkerohttp://www.newegg.com/Product/Product.aspx?Item=N82E1688271500101:48
bkerodinner time, spicy curry!01:48
kanzurewhat do I do with an fna file?02:02
kanzure'FASTA file format, nucleic acid sequences'02:02
kanzurelooks like I might be able to split it up if I wanted to but why wasn't it in the first place?02:03
kanzureeach entry in the fna file looks like http://earth.lab.nig.ac.jp/~dclust/cgi-bin/barley_pub/blast_viewer/showflatdata.cgi?CLNID=5005&CLNLIBID=54&DBID=102:04
kanzurespecially the portions separted by the hr elements on the page02:04
-!- Nade is now known as Nade|sleep02:08
kanzurehttp://www.facebook.com/profile.php?id=959109:50
kanzureJoseph Jackson is a Harvard guy?09:50
kanzurewho is this fellow ..09:50
kanzurehttp://cosmeng.org/index.php/Project_Mindfile09:53
kanzurewhat the fuck is a 'beme'09:54
kanzurewill anybody get upset if I start claiming mind uploading (in the "soul" sense of "mind") to be impossible?10:02
maraineinnot me10:09
kanzureyou guys can't even keep yourselves the same from one moment to the next; how do you expect to do so with mind uploading?10:10
kanzureas if there's some secret sauce to identity?10:10
kanzure"mind uploading" is misnamed10:10
kanzurelet's call it "brain rearchitecting" ?10:10
maraineini actually wanted to ask you, back when you were talking about consciousness, if you were offered the chance to have your brain frozen and and destroyed in the process of making a hi fidelity digital copy, would you take it?10:10
kanzureif I'm at the end of my life & my other projects have failed, yeah sure10:11
* kanzure would have to consider the various things10:11
maraineinand if you're not?10:11
kanzuresorry?10:12
kanzurewhat?10:12
maraineinwould you take the offer now or in the near future? while you're still healthy and able to continue as a biological organism?10:13
kanzureNo.10:13
* kanzure has his own plans for such things10:13
maraineinwhat did you have in mind?10:13
kanzurebtw, for the record, I'm not interested in one-to-one "copies" of the mind - I just want to try out brain building and seeing what I can get10:14
kanzurenot even twins are all that similar, you see :)10:14
kanzurein feasible terms this goes back to the notes on artificial wombs, dna synthesizers and other various projects to try to "enclose the supply chain" 10:14
kanzure"supply chain" of myself, if that makes any sense10:15
maraineinwhat's your objection to the biological brain destroyed and turned into a digital copy btw?10:16
* kanzure hasn't investigated the mechanism, source code or anything else10:16
kanzurethat's my objection.10:16
kanzurealso,10:16
kanzureit's a stubborness issue10:16
kanzureI'd much rather do it on my own10:16
marainein*nods*10:17
fennobvious objection is that you die, silly wabbit11:44
fenni'll be highly offended if anyone goes around claiming some particular technical challenge is impossible11:44
fenn"Bemes are fundamental, transmissible, mutate-able units of beingness" whatever that means11:45
* fenn chucks it in the "stupid word" group along with "spime"11:50
kanzurespime?11:52
fennrecyclable digital device thingy11:53
kanzurehuh11:53
kanzurethe differences between a bio lab and an engineering lab are interesting12:00
kanzurethe engineering lab has more comfortable chairs12:00
kanzureand more windows boxen12:00
fenndo biologists still exclusively use macintosh?12:03
kanzureactually no :)12:03
kanzureoddly enough it was the computery guys in the bio lab that were using mac12:04
fennwell that sorta figures12:04
fennit takes a little bit of initiative to pick something besides the default12:04
kanzuremajority of laptops as seen from the back of the 400+ occupancy lecture halls, are mostly mac12:32
fennin what class?12:33
kanzurechemistry 101 "inches to moles"12:33
kanzure301, really, but whatever12:33
fennhuh.12:33
kanzuresome guy in the audience had a giant slackware sticker on the back of his screen, so I was happy to see at least 1/40012:33
kanzurethe actual count is 280~ because we do realtime quizzes with an active count of the number of people who have answered via iclicker.com12:34
kanzureme needs to run off to lern me sum wordz12:34
kanzureso I think I have a simple idea for a wearable16:13
kanzurewhy not just use one of the swivol-thingys found on desks mounted to a backpack, then mount a small table top on it, then mount a keyboard ? Then you can use a draw string with your elbow or something to have it deploy and lock in front of you while you walk.16:13
kanzurehttp://lockler.com/16:14
kanzurehrm, wrong site16:14
kanzure*swivel16:14
kanzureah, 'locking swivol'16:14
kanzurehttp://www.hangler.com/16:15
kanzurehttp://www.thomasnet.com/products/swivels-82070202-1.html16:16
kanzurehttp://www.dannychoo.com/detail/mac/eng/image/1744/Keyboard+Trousers.html16:25
fenni dont know what you mean, i'm picturing something like this: http://www.boingboing.net/2003/07/09/free-robot-art-in-ny.html16:31
kanzurehttp://heybryan.org/diagrams/kb.png16:31
kanzurefenn: well, yeah, that would of course be great16:31
kanzurelooks a little complicated for a quick hack though16:31
fennthe simple reason is that you would bump into stuff16:32
kanzure?16:32
fennthe other reason is you have this big heavy thing with a large moment of inertia hanging off your shoulder all day16:32
kanzurereason for what16:32
fennthe reason why it won't work, stupid :)16:32
fenn"why not blah blah blah blah... ?"16:33
kanzureI don't care about bumping into stuff really, I do that anyway (not really, but I could get used to it - minor concern)16:33
kanzureand I can't imagine it weighing more than my 20 or 30 pound backpacks anyway16:33
kanzurehow much could a metal swivol weigh  ? surely only 5 or 10 pounds at most16:34
fennand your arm would get tired i think16:34
fennholding it out vertical like that16:34
kanzurecouldn't it rest on it?16:35
kanzurehttp://www.halfkeyboard.com/products/whkbinfo.html <-- half keyboard .. kind of like my "mount it under the forearm" idea16:35
fennbetter to have it at pocket level, rotated forward 90 degrees16:35
kanzurehttp://www.embedds.com/one-hand-wearable-keyboard-with-usb-interface/16:35
kanzurepocket level, forward 90 degrees16:35
kanzurehrm16:35
fennthose are for people who have to look at their fingers while typing16:35
kanzureoh, the half kb at pocket level you mean16:36
fennright, belted onto your thigh or waist16:36
fennwhy isn't this obvious? what are people thinking!16:37
kanzurehm?16:37
fennarm-mounted keyboards, really, come on16:37
fennthey saw it on that movie 'abyss' and were like .. "dude i need to get me a deep sea diving suit, but i'll settle for a wrist keyboard"16:37
fennfor $300!!16:38
kanzureit's kind of hard to test a kb at waist level because of gravity16:39
kanzurehrm16:39
kanzuremounting isn't quite obvious to me either16:39
kanzurehar har har16:39
fennok take a keyboard, saw it in half16:39
kanzurewhy16:39
fennnow strap one half to your left thigh, one half to your right thigh16:40
kanzureoh16:40
kanzureat the sides.16:40
fennyes, so you dont look like you're masturbating16:40
fennbut more practically because that's the way your arms hang at rest16:40
kanzurethe small number pads that are "sawed off" and used by people that ring up how many kids you owe them are of the right size16:41
kanzureoh, you know, if you just drill a few holes through the plastic16:42
kanzureon a full kb16:42
kanzureand run some chains through it16:42
fennaroo?16:42
kanzurethe holes going across the bottom where your palms would rest if the plastic was extended that far16:42
kanzureand then hook the chains into your belt buckles or something16:42
fennso you just have a kb hanging from your belt?16:42
kanzureesc is on the left, numpad on the right16:43
kanzureyeah16:43
kanzureutility belt16:43
kanzuremy utility belt includes ssh, what about you?16:43
fenncould work, seems like it would be uncomfortable16:43
fennif you did it wrong it would bounce around a lot, and you have to squeeze your wrists in at a weird angle16:44
fenngives me carpal tunnel just thinking about it :)16:44
kanzurego find a metal ring, go get your drill and try it16:44
* kanzure wonders why he doesn't have a drill16:45
fennmetal ring?16:45
kanzurewell, unless you have chain or rope or something16:45
kanzurelike a key chain thingy16:45
fennif you ever want to saw a kb in half, i think it would work ok if you sawed two in half (keeping the flex-circuit-board intact) and plugged both in16:46
fennotherwise you have to connect all the wires together, which might not work so well on that flex membrane switch stuff16:47
fennof course ideally you'd do some sort of chording keyboard so you could type the whole alphabet+symbols with one hand16:48
kanzuremy experiences with chording have not made me happy16:49
fennyeah, figures16:49
fenncould switch between modes16:49
kanzurehttp://www.billbuxton.com/matias93.html 60 wpm on half kb study16:49
kanzurehttp://store.ergoguys.com/mathk.html16:50
kanzurewhy do these cost so much16:50
kanzurethe pcb isn't complex ..16:50
kanzurethe keys are pre-manufactured16:50
fennoooo wow "hunt-and-peck typing speeds were surpassed after 3-4 hours of practice" </snark>16:50
fennreally there should be some free AVR/PIC projects out there16:51
fennits just some switches and serial protocol16:51
kanzureright16:51
kanzurehttp://heybryan.org/projects/keymemproj/16:52
fennhalf keyboard is missing a lot of shit16:52
kanzurehttp://heybryan.org/projects/keymemproj/project.html had some notes on the protocol16:52
fennlike, how am i supposed to switch between screen sessions with only alphanumeric16:52
fennhmm ok bad example16:52
fenni wonder why they did the secondary letters backwards from normal qwerty16:53
fennpoiuy instead of yuiop16:54
kanzureweird mental cross-reference thing?16:54
kanzurethat doens't make sense I guess.16:54
kanzure*doesn't16:54
kanzurehttp://forum.tabletpcreview.com/showthread.php?t=9497 diy split keyboard16:54
kanzure'I thought of an idea of having a keyboard split down the middle and placing one half of the keyboard on each side' (of his tablet)16:55
kanzurenot bad :)16:55
kanzureespecially if the screen would be able to tilt ..16:55
kanzureindependently of the kb ..16:55
kanzurehah16:57
kanzurehe's online, cool16:57
fennexcept there's not really any information there..16:57
kanzurehe couldn't do it apparently16:58
fennwah, so what16:59
fennmore crap, love the door stops: http://blogs.law.harvard.edu/anderkoo/2007/05/02/product-review-kinesis-freestyle/16:59
fenni'd like two of those with a half-keyboard mode key, so you could type with one hand (in qwerty)17:00
fennsomething like, rock your palm to the right for right side, rock to left for left side17:00
kanzure'Designer Erik De Nijs, has stitched together this eye catching pair of "Beauty and the Geek" jeans. These "modern shaped trousers which are often worn by youngsters.." are the perfect solution for Googling quick exits while running from the fashion police. '17:01
kanzurewait, they weren't real kb jeans17:01
fennits not like it would be hard to make them that way, get a roll up silicone keyboard and glue it to some sweatpants17:02
fennbut it's a bad design for what should be obvious reasons17:02
kanzureright right17:02
kanzure$139 plus shipping for the 20 inch separation between the two parts on that Kinesis Freestyle thing17:03
kanzure$80 for the 6 inches17:03
fenni think it is a real silicone keyboard on the trousers, note the huge pointless grey square on the right17:04
kanzurehttp://thecraftstudio.com/bcboy/keyboard.html 17:05
fennthere are folding bluetooth kb's for palm pilot accessory, seems about right17:06
kanzurecool, he's doing split kb 17:06
kanzureon that last link17:06
kanzureheh, he's an rpm user17:10
kanzurewith the half kb you could mount to the jean loops still17:10
kanzurebkero: Know of the Microarchitecture Research Laboratory and Loh?17:14
kanzurehttp://justfortheloveofit.org/17:14
kanzurehttp://mjam.at/17:14
fennfreeconomy sorta reminds me of www.n55.dk17:23
fennexcept they dont really invent anything17:23
bkeroI don't17:58
bkerofenn: Try looking into a whuffie economy. :)17:59
fennbkero: i've looked into it, the problem seems to be all the little details like how you actually calculate the damn thing18:05
bkeroand the fact that your worth as a human being is based on popular opinion.18:06
fennsuits me18:06
bkeroand as we all know, pop stars aren't worth their weight in shit.18:06
fennyour opinion will be weighted appropriately18:06
fenni think it would be interesting to see real democracy for once18:06
bkeroYea.  A couple people who would be bothered to despise them would drown out in middle school girls18:07
bkeroThe greeks had real democracy.18:07
bkeroThey all got together and argued.18:07
bkeroAnd got drunk18:07
fennsee, that's the problem, it takes more effort to bump someone's whuffie than they're worth to you in the first place18:07
bkeroAnd nothing was ever accomplished. ;)18:07
fennwoot!18:07
fennthese folding kb's are really cheap18:08
fennhttp://www.amazon.com/gp/offer-listing/B00008W81P/ref=dp_olp_218:08
fenni wonder if i should spend the extra $5 for new-new vs like-new18:09
bkeroEw?  IR?18:09
fennwill probably have to hardware hack it anyway, IR is easy to interface with (better than bluetooth at least)18:10
bkeroEr, I like bluetooth much better18:10
fennmost other kb's have some funky molded connector18:10
bkeroOnce you associate it's just a serial connection18:11
bkeroPlus my laptop and phone have bluetooth, not IR18:11
bkeroI fucking hate how even new wireless mice don't use bluetooth.  They just use proprietary crap.18:11
fenncan you get bluetooth mice?18:11
bkeroyes18:11
bkeroYou can get a couple18:11
fenni remember reading somewhere that bluetooth chips were expensive18:11
bkeroand they're pretty expensive18:11
bkeroNo dude, bluetooth was DESIGNED to be cheap18:11
bkeroIt was designed to add $8 to the total cost18:12
fennwhy is blutooth-* expensive then?18:12
bkeroBecause assholes in the industry say OMG NEW HOTNESS +$892374892374892318:12
fennhmm.. what's so good about bluetooth anyway?18:12
bkeroIt's standard18:12
fennvs say zigbee18:12
bkeroand included in any good laptop18:12
fennwhere's my software radio! wah18:12
bkeroYou don't have to have some stupid dongle sticking out of your computer18:13
fennyou know, they really ought to make little usb cubby-holes18:13
fenna little pocket in the laptop you put the usb device in18:13
fennor wires, so they dont just snap off18:13
bkeroI'd rather not.  USB has some pretty bad issues when it comes to power saving.  And nobody makes a hardened USB bus. :/  I can always get them to crash.18:14
fennsame for audio jacks18:14
bkeroMy fileserver has 8 hard drives in it attached via usb, and I've tried 2 different usb chipsets, both shit themselves under heavy load.18:14
fennwell, you wont find me championing usb :\18:14
bkeroI like firewire for hard drives, bluetooth for input devices18:14
fenni like power over ethernet18:15
fennbut nobody makes anything for it18:15
bkeroUntil you plug a PoE cable into a regular ethernet port :P18:15
fennno, it's electrically isolated18:16
fennworst that would happen is it not power on18:16
bkeroErm18:16
bkeroPoE involves moving a significant electric current through an ethernet cable?18:16
fenni guess, fsov significant18:16
bkeroEnough to power a devices18:16
fennyes18:17
bkeroSeveral watts18:17
bkeroI'm wondering how that wouldn't blow a north bridge/ethernet chipset if plugged into a regular ethernet port.18:17
fennbecause there are little tiny transformers that isolate the ethernet line18:17
fennits like 1000V isolation standard18:17
bkeroSo you're saying there's current dampening on the regular ethernet's PCB side?18:18
fenni dont know what 'current dampening' is supposed to mean, but it's an isolation transformer18:18
bkeroWhat does it isolate it from?18:20
fennit isolates the voltage in the two circuits18:20
bkeroBut it's the massive current you're worrieda bout.18:20
fennnon-POE jack wouldn't be drawing any current18:21
fennand anyway it goes over unused wires that probably arent even connected18:21
bkeroregular ethernet jacks carry 3v at 1mw.  PoE jacks carry typically 5-12v at 5-10 watts18:21
fenndo you know what an isolation transformer is?18:22
bkeroYes18:22
fennthe "3v" is AC18:22
fennPoE is DC18:22
bkeroRight18:23
bkeroBut isolation transformers have specifications18:23
bkeroSuch as ratings18:23
bkeroand if those input ratings are exceeded, functionality is questionable.18:23
fennyes like isolation voltage, which i mentioned was 1000V or so, seems kinda hard to compare 12V to 1000V18:23
fennbut i dont think the power wires are even used in a normal ethernet jack18:24
bkeroDepends on what bitrate they are18:24
bkeroFull duplex gigabit will use 818:24
bkeroFound some isolation transformer datasheets used in ethernet chipsets.  Their rating is 3 watst.18:26
fennaha there are two different modes, "A" and "B"18:26
fennin "A" the power goes over the normal data lines (pins 1234) and in B they use the "spares" (5678)18:27
fenner... actually B is 4578 (wtf)18:28
bkeroyea18:28
bkeroDon't want the two polarities right next to each other18:28
bkeroOtherwise you get weird SNR issues, magnetic bleeding, and RF noise18:28
fenni dont see why it matters since it's DC18:28
bkeroJust because it's DC doesn't mean it's clean power18:29
fennunless you have some hacky noisy DC-DC converter in there18:29
bkeroYou mean like most wall warts?18:29
fennright18:29
fenni dont see how it would make sense to send noisy DC power down a data line18:29
bkeroIt doesn't, that's why the parts are split.18:30
bkero*polarities are split18:30
fennyou shouldnt be using a cheap wall wart with POE because there's only one power source18:33
fennso you dont need lke 50 different power supplies18:33
bkeroYou sure your PoE isn't using a cheap wall wart in a fancy box?18:33
fennif cheap == don't work then yes18:34
bkeroCheap will work18:34
fennyou can easily tell though by lost/garbled packets18:34
bkeroBut it also has a myriad of problems, that usually aren't immediately recognisable.18:34
bkeroFor instance, is the power supply regulated?18:34
bkeroIf not then voltage spikes on the supply side can get fed through into your PoE devices, and some might not have the hardware to handle that.18:35
fennthey can get fed through anyway18:35
bkeroYes, but with a good power supply it'll do a much better job at preventing it18:35
fennright, that's it's job18:35
fennlook, if your cheap wall wart kills the POE device, then that's the device maker's problem18:36
bkeroMost cheap power supplies aren't regulated however, so if you're using one on hardware that's expecting clean regulated power, bad things can happen if you get some vdroop or a vspike.18:36
* bkero should test the ethernet on his computer to see exactly how many watts the isolation transformer can take before it pops.18:38
fennbah just hook it straight to the mains18:40
fennbtw there is a handshaking protocol before any power is delivered18:40
bkeroI thought there would be18:41
kanzure'More than 90,000 attendees from 119 countries have assembled in Chicago to be privy to pretty much every type of manufacturing machines and technology being used on today's shop floor. Here are some highlights.' http://enews.thomasnet.com/ct.jsp?uz3763235Biz7266198 rosetta stone of interoperability19:09
kanzurewonder if they're just yanking my chain19:09
kanzurealso, how the hell does Chicago support 90,000 hotel rooms19:10
kanzurethat's rather impressive ..19:10
kanzure'In a demo here this week, at the MAG Industrial Automation Systems booth, Next Engine has displayed technology that could open up reverse-engineering technology to a much wider user base: a low-cost reverse-engineering system that includes a 3-D scanner and some sophisticated software. The company used its system to reverse-engineer a Ferrari (OK, so it was really a toy model). The cost is 1/10 that of competing systems.'19:10
kanzureso was it reverse engineered or not19:10
kanzureI'm confused19:11
kanzure'But it's a new open-source communication protocol standard called MTConnect that really has a pervasive presence at IMTS.'19:11
kanzurehttp://www.mtconnect.org/19:11
kanzure'19:11
kanzureBasically, MTConnect serves as "middleware" between the machine controller and higher-level applications. It provides a means to describe, for instance, actual and command positions of a machine tool's axes of motion as well as pretty much any data a sensor can capture. And, it offers basic alarms and notification functionality. Using XML-based descriptions of various machine functions (e.g., spindle time, machine tool temperature, power status, etc.)19:11
kanzure'According to the exhibit, manufacturers spend $90 billion a year on interoperability issues. Many large users of machine tools already have proprietary solutions to their data-connectivity problems, but the MTConnect approach could open up new doors for small companies and university researchers.'19:12
kanzure$90 billion19:12
kanzuresolved by an XML schema19:12
kanzurewtf19:12
kanzurewell, not quite 'solved'19:12
kanzurebut with 90,000 people hearing about it or something19:12
kanzurewho the hell releases a white paper in a doc file19:13
kanzurehttp://mtconnect.org/media/MTConnectWhitePaper.doc19:13
bkerokanzure: There were 80,000 people at PAX this year :)19:13
kanzureand then calls it open source?19:13
kanzurePAX?19:13
bkeroPenny Arcade Expo19:14
bkeroA bunch of dribbling teenagers19:14
kanzurehttp://www.youtube.com/user/MTConnect19:14
kanzureHah.19:14
kanzureAwesome.19:14
kanzureno mtconnect mention on Wikipedia19:14
kanzure*cough*19:14
kanzureSoftware Architecture for CAM Tools to Enable a Flexible Digital Factory http://mtconnect.org/media/architecture.pdf19:15
bkeroAdd it yourself?19:15
kanzurebkero: I'm investigating first :)19:15
kanzure.net sdk for mtconnect devel 19:22
kanzurehttp://mtconnect.org/index.php?option=com_content&task=view&id=122&Itemid=5019:22
kanzureyeah, that's *real* open19:22
kanzureok19:25
kanzureso what they're doing is having an 'agent' architecture where agents query the local address space for components19:25
kanzureand then they check to see what they know about those types of agents19:25
kanzureand then they have agent-to-device adapters and such19:26
kanzureyuck, they're using Windows + windows shares on a manufacturing floor19:28
kanzureplus HTTP queries between devices19:28
kanzurewhere's our gnu overlords when we need them ..19:30
bkerokanzure: lets do some manufaxturing process reform!19:46
kanzurebkero: How do you expect to do this without a factory? :p19:47
bkerokanzure: a factory in china is about $0.50 a day19:48
kanzurewhat does that money buy me?19:48
bkero200000 laborers and 3 retoolings19:49
kanzurehrm19:52
kanzure                  1st International Conference on               Bioinformatics and Computational Biology              April 8-10, 2009, New Orleans, Louisiana USA https://secure.myhostadvantage.com/V0015065FC/con-reg/default.asp?ConID=8520:28
kanzureHey boogles.20:29
booglesHey there.20:30
kanzureNote that chizu is probably your coworker.20:30
kanzure*coworker too.20:30
booglesHeh, I don't currently have any coworkers. :P20:30
kanzureOSUOL.20:30
booglesBut yeah, I know chizu 20:30
booglesYeah.20:30
kanzureWhat's with Ohio State and #hplusroadmap :-)20:30
booglesYou mean oregon state?20:31
kanzureboogles: At the moment I'm writing some emails to the openmanufacturing group, and might get back in a bit. Until then, check the wiki in the /topic.20:31
kanzureOops. Yes.20:31
booglesCool, I'll check that out later.20:37
booglesThanks for the info. :)20:38
kanzureHey marcel2.20:45
kanzureboogles: We do stuff in here like automated manufacturing/design, brain implants, bioreactors, and lots of complaining.20:45
marcel2hello21:10
marcel2roadmap to what?21:10
kanzurehttp://www.listbox.com/member/archive/303/2008/09/sort/time_rev/page/1/entry/2:253/20080912075604:CDF9D9A6-80C1-11DD-AF15-FB8BA6911C2E/ 'realistics'21:14
kanzuremarcel2: I was assembling technologies that were a roadmap for a transhuman to follow, i.e., what do I do next - specifically what research needs to be done to solve some important problem.21:15
marcel2what is the next thing to do?21:28
kanzuresupply chain closure, might be the right way to say it21:31
kanzureare you familiar with manufacturing?21:31
kanzureI'm lagging because I just read the most terrible email all day .."Unfortunately we cannot define what output is useful above our own intelligence level. We have to rely on external tests by systems that are more complex than a single human brain. I know of two such systems. One is the economy, which measures intelligence in dollars. The other is evolution, which measures intelligence in number of descendants."21:31
kanzureargh, wrong wrong wrong21:31
marcel2sure?21:32
marcel2sounds no tbad21:32
marcel2but iam silly^^ so it maybe really wrong21:33
kanzureSpecifically what's wrong with it is that 'intelligence' is a folk psychology concept; it's not from systems neuroscience from the ground up, but rather from our guesses about the way that the brain works21:33
-!- Irssi: #hplusroadmap: Total of 14 nicks [0 ops, 0 halfops, 0 voices, 14 normal]21:34
bkeroboogles: Your questions are best asked here :)21:34
bkeroboogles: feel like shaving your head? ;)21:34
kanzurebkero found an excellent method of shampoo + pennies for electrodes.21:34
kanzureBy 'excellent' I mean I haven't tried it yet ;-)21:35
kanzureHey marainein21:35
bkeroSo21:35
maraineinhi kanzure21:35
bkerokanzure: interesting find21:35
maraineinwhat did you find?21:35
kanzurebkero: 'Realistics' ?21:35
kanzurebkero: See my response. It should be there now, refresh.21:35
kanzurehttp://www.listbox.com/member/archive/303/2008/09/sort/time_rev/page/1/entry/2:253/20080912075604:CDF9D9A6-80C1-11DD-AF15-FB8BA6911C2E/21:35
bkeroMy landlord's wive was pregnant, and has ultrasound gel sitting around.  Do you think that it would work for a conductor?21:35
kanzureUgh, what's the gel?21:36
bkeroNot sure yet21:36
marcel2is this a pervers channel??21:36
kanzureA what?21:36
bkeroWikipedia just says it's a water-based gel.21:37
marcel2nothing iam quiet now21:37
bkerokanzure: i think he meant perverse21:37
bkeromarcel2: No, I'm using it for SCIENCE!21:37
kanzuremarcel2: Anyway, to answer your question - if you are interested in the next steps in becoming transhuman, basically it's looking like it requires the ability to create on your own - so this means the ability to manufacture, perhaps biologically ( http://biohack.sf.net/ ) or perhaps with heavy metal etc. http://heybryan.org/exp.html21:38
kanzurere: "realistics" - I sent a response: http://www.listbox.com/member/archive/303/2008/09/sort/time_rev/page/1/entry/2:256/20080912172325:FB0C08FC-8110-11DD-8F74-809794291AF4/21:39
marcel2prototypeprinter fpr everybody21:40
marcel2that would be raly cool yes21:40
kanzuretypos?21:40
marcel2?21:40
marcel2what?21:40
kanzurefpr?21:40
marcel2for21:40
kanzureoh, okay21:40
marcel2realy21:41
kanzureIt's not just prototypers though :-)21:41
-!- marcel2 is now known as marcel_sleep21:44
kanzurehttp://socialsynergyweb.org/oardc22:06
bkerololsynergy22:30
kanzurehrm22:58
kanzurewe need an 'archive bot' - to retrieve books from library holdings and turn to a certain page and scan over the page with a live web cam22:58
kanzureor just a mounted mechanical arm on the ceiling with tracks22:58
kanzureoh23:02
kanzureapply palm to face23:03
kanzurewhat the lab is doing over here for their own online repository (which I'm still trying to find the link to) is reverse engineering to figure out 'parts' that they don't have in their db23:03
kanzureby knowing the inputs and outputs from simple investigations of the product to be reverse engineered23:03
kanzuresort of. they're not focusing on that much.23:03
kanzureHi again marcel.23:13
kanzure'Capturing creativity: Using a design repository to drive concept innovation'23:16
fennrealistics = reciprocality, but poorly stated23:45
fennindustrial device manufacturers have a vested interest in poor interoperability, it's called "vendor lock-in"23:45
fennthey'll sell you the computer for $50 but the connectors cost $150 etc23:45
kanzurerecpirocality.org specifically? yes23:48
fenni thought google was supposed to be doing the whole archive bot thing23:48
fennyes23:48
kanzureno, google does it by hand23:48
kanzureI've seen fingers in Google books23:48
kanzureholding the pages open ..23:48
fennwell, whatever.. but where's the DATA23:48
kanzurehm?23:48
fenni mean i can't just look up whatever journal article or book23:49
fennhave to pay $10-200 a pop23:49
kanzureyou're confusing me23:49
fennif they even offer, usually it's just "sorry you are not allowed"23:49
kanzureright23:50
kanzureI'm confused anyway at the moment23:51
kanzurefor some reason I was checking mail, a professor sent me some papers to read, so I read them23:51
kanzureand now I'm left wondering what it was that I was doing23:51
fennwow that last paragraph was off the wall: "Anyway, it's context that matters when it comes to groundtruthing 23:53
fenncitations and traces in information ecologies, and not so much the 23:53
fennsymbolic manipulation thereof. It's the overall groundtruthed process, 23:53
fennthe instantiated exploding von Neumann probe phylum that will 23:53
fennultimately (not) grey goo you.23:53
kanzureuhm, when I reread it23:53
kanzureI realized that I dissed programs23:53
fennmy markov chain bot could write that :)23:53
kanzurewith 'symbolic manipulation' 23:53
kanzureguess my summary sucked because it was more of a generalization23:53
kanzurebut surely you understand the idea of "HEY look over there! it's reality ! go touch it! erm, not you. you stay put" etc.23:54
fenni think when he's talking about "realizing" it's not so much about following citations back to their original sources, but rather having gone through a sort of 'play' period where you interact with real systems and have an opportunity to build up/internalize a model of how it works23:55
kanzureto play with them you have to chase them down the wabbit hole23:56
fennkids have no opportunity to 'play' with math23:56
kanzurered pill / blue pill23:56
fennthey can't even use a fucking calculator, the sickos23:56
kanzuremathematica is a pretty good opportunity23:56
fennmathematica is a great opportunity23:56
fenni tried maxima and didnt like it23:57
kanzureI tried matlab and didn't launch over the ssh tunnel23:57
kanzuressh -X23:57
fenndoes matlab run on linux?23:57
kanzurethe bootup logo worked though :p23:57
kanzuremaybe, I'm pretty sure I was working with a linux version23:57
fennlol "matlab is available on the following platforms: Linux, 7.6"23:58
kanzureespecially since I got their splash23:58
fenni guess that means redhat 7.623:58
kanzureweird23:58
kanzureI wonder what uninformed person wrote that23:58
kanzuresurely not the webmaster?23:58
fennoh oops that's matlab version 7.623:59
kanzureuninformed person was you :(23:59
* fenn boggles23:59
fenni thought it was up to 1423:59

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