2009-06-04.log

--- Day changed Thu Jun 04 2009
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wrldpcFenn do you have the link to the journal of alternative computational paradigms?02:36
wrldpcno fenn ..02:36
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kanzure_http://88proof.com/synthetic_biology/blog/archives/28006:51
kanzure_oh shit06:51
kanzure-back09:34
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kanzure-ok, backup is now up12:00
kanzure-http://adl.serveftp.org/papers/papers-backup-2009-06-02.tar12:00
kanzure-warning: 3.4 GB12:00
kanzure-in a while it will also be available here:12:01
kanzure-http://sata.serveftp.org/~bryan/papers/papers-backup-2009-06-02.tar12:01
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genehackeryou there kanzure17:36
genehackerkanzure...17:50
genehackerI can't download that paper17:51
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genehackererr your paper dump18:07
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kanzure_why not18:50
kanzure_does it work for anyone else?18:51
kanzure_dies ut werken18:51
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kanzure-_hey19:39
-!- kanzure-_ changed the topic of #hplusroadmap to: galaxies galaxies galaxies. fast download of paper dump: http://adl.serveftp.org/papers/microfluidics_2009-06-01.zip and http://adl.serveftp.org/papers/papers-backup-2009-06-02.tar (3.5 GB (includes the microfluidics archive))19:41
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genehacker_so kanzure I'm sure you've seen the diybio post about the request for policy makers have you?20:06
genehacker_or something like that20:06
genehacker_seems we've got a spook posting in DIYBIO20:07
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genehacker_hehehehehe20:11
genehacker_this'll be fun20:11
kanzure-_genehacker_: I already replied to that guy earlier today20:13
kanzure-_he asked me to write a longer article or something20:13
kanzure-_I don't know if I will20:13
kanzure-_it also sounds like he didn't really listen to me20:13
genehacker_yeah I wouldn't20:13
kanzure-_also, I found some more content on the adl server that I completely forgot about20:13
genehacker_we need to make a rule about diybio20:13
kanzure-_http://adl.serveftp.org/papers/review/20:14
kanzure-_those are all papers about automated design20:14
kanzure-_although it doesn't include anything about graph grammars or any of campbell's stuff 20:14
genehacker_RULE 1 of diybio DO NOT TALK ABOUT DIYBIO, ESPECIALLY TO THE PRESS, IT WON20:14
genehacker_'T TURN OUT WELL20:14
genehacker_I want to test something out with this guy20:16
genehacker_wtf I can't post to diybio?20:17
genehacker_post successful20:19
genehacker_NOT EVEN THE SECURITY COMMUNITY CAN STOP ME FROM POSTING!20:20
genehacker_ahahahaha20:20
genehacker_oh yeah we really need to consider other nucleic acids like you said20:24
genehacker_they are simpler to make20:24
genehacker_people have even made nanostructures from GNA20:24
genehacker_link20:25
genehacker_http://www.eurekalert.org/pub_releases/2008-04/asu-smc042808.php20:25
genehacker_sucks though20:25
genehacker_link is bad20:25
genehacker_http://pubs.acs.org/doi/pdf/10.1021/nl048246f?cookieSet=120:26
genehacker_well I gotta go20:26
genehacker_I might get internet tonight20:26
kanzure-_er, the problem though is that I don't know if polymerase can read GNA20:28
genehacker_yes20:29
genehacker_it looks like it can20:29
genehacker_john szostak did that20:29
genehacker_hold up20:31
genehacker_too many tabs20:31
kanzure-_I'd like the link.20:32
kanzure-_it's exactly what I was looking for but failed to find20:32
kanzure-_have you tried using opera again?20:32
genehacker_http://www.pnas.org/content/104/37/14598.abstract20:33
genehacker_I am using opera20:33
genehacker_opera and firefox20:33
genehacker_man I love my extensions20:34
kanzure-_genehacker_: where can I find somebody willing to do the GUI work of my firefox extension20:38
kanzure-_I spent way too many hours only to fail with XUL20:38
kanzure-_maybe there are some scriptkiddies willing to do the work for me20:38
genehacker_try the internet20:39
kanzure-_wahoo20:39
kanzure-_thanks for the paperlink20:39
genehacker_anyway I'm stuck in a writing class disguised as a engineering course20:39
genehacker_and I've been thinking why not make an irc chat client that uses morse code?20:40
kanzure-_why?20:40
genehacker_and display the chat on that blinky led on every computer20:40
genehacker_well hopefully I have internet when I get back20:41
genehacker_bye20:41
kanzure-_ok20:42
kanzure-_Bst polymerase looks neat20:50
kanzure-_here's the paper link20:50
kanzure-_http://sata.serveftp.org/~bryan/papers/Enzymatic%20synthesis%20of%20DNA%20on%20glycerol%20nucleic%20acid%20templates%20without%20stable%20duplex%20formation%20between%20product%20and%20template%20-%20Szostak.pdf20:50
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kanzure-_heybryan.org is back up21:10
kanzure-_not that it matters since the speed sucks anyway21:10
kanzure-_and it probably will not stay up for long since the main hard drive is full and is having some troubles moving crap off of it21:11
kanzure_er, what's so special about a "cutset" ? why not just say "delete an arc"21:21
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kanzure_"The total virtual work of the impressed forces plus the inertial forces vanishes for reversible displacements"21:29
kanzure_A virtual displacement  "is an assumed infinitesimal change of system coordinates occurring while time is held constant. It is called virtual rather than real since no actual displacement can take place without the passage of time.21:30
kanzure_"Virtual work on a system is the work resulting from either virtual forces acting through a real displacement or real forces acting through a virtual displacement."21:30
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kanzure_20:26:29 omg/jblake: a [(n*m1) (n*m2)] concatenation produces a (n*(m1+m2)) resu lt22:34
kanzure_20:27:31 omg/jblake: it appends (first row of left matrix) (first row of right m atrix) to form (first row of result)22:34
kanzure_20:27:32 omg/bryan: where n, m1, and m2 are dimensions of the matrices?22:34

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