2010-05-16.log

--- Day changed Sun May 16 2010
JayDuggerfenn: Have you, or do you know of, a template for BOMs?00:33
fennno00:39
fenni worked out a schema for describing parts ordered from different suppliers, it's inventory/data/schema.yaml00:40
fennbom and inventory are related don't you think?00:42
fenni hate it when people make bom's with parts ordered from mouser00:42
fennor some random european company i've never heard of00:43
fenna good bom format should be able to handle different possible suppliers, or even a whole tree of part combinations (i.e. you need steppers and stepper controllers or servos and servo controllers)00:44
fennmetric/english hardware is another example00:45
JayDuggerThank you. BOM & inventory interact, yes.01:04
JayDuggerHow would I use this yaml schema?01:06
fenner, you look at it, and do stuff01:11
fennit's not a computer parseable document01:11
JayDuggerDo you have a public link to it?01:14
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JayDuggerhttp://halfbakedmaker.org/2010/03/07/genetic-programming-in-the-cloud/03:11
kanzureJayDugger: http://designfiles.org/skdb/inventory/05:35
kanzurethere is no "schema" for yaml really05:35
JayDuggerWhat should I do with that directory, kanzure? Do I need to install django to use it?05:38
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kanzureJayDugger: oh crap. sorry. that's smari's old stuff.08:19
JayDuggerNo worries.08:19
kanzureJayDugger: http://designfiles.org/skdb/doc/ has the other BOM/inventory directory08:19
JayDuggerGot it.08:20
JayDuggerThank you, kanzure.08:20
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kanzurehttp://www.hackyday.com/2010/05/biopunk-watch-time-temperature-gaming.html10:39
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any46613858weather, sorry, bbl13:05
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thesnarkdoes anybody know of a good app that allows me to associate home-made annotations with web pages?13:09
kanzurethere are tons of firefox plugins for that i guess13:10
* thesnark is using chrome13:13
thesnarkah, sidewiki13:14
thesnarkduh13:14
thesnarknvm13:14
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lepton_Anybody have any suggestions for drupal site hosting? VM's to run on Linode are an option, too15:04
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lepton_kanzure: You mentioned on gnusha.org that Michael Grube is a fellow trying to develop a 32-channel EEG headset. Some of the people I'm connected with are doing similar open source work, so it might be a good idea make some connections there15:18
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kanzurehttp://jagdishhathiramani.wordpress.com/2010/05/16/tomorrowmedicine-personalised-and-self-aware/15:26
kanzurelepton_: thesnark is michael15:26
kanzurethesnark: ping15:26
thesnarkkanzure here15:27
kanzuresee above15:27
thesnarkhi lepton_15:27
kanzurehaha fake chinese google http://www.goojje.com/15:29
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thesnarklepton_ I should inform you that we decided the most efficient use of our resources would be to simply open up the emotive epoc16:00
thesnarklepton_ we are no longer designing a 32 channel eeg16:01
lepton_Hey, sorry for the absense. I'm mostly away from the computer at the moment16:02
thesnarkno problem16:02
kanzurei keep trying to convince thesnark to figure out the AES 512 encryption key for the emotiv headset ;)16:02
lepton_There was some interesting work trying to open up the OCZ NIA headset that was fairly active last year16:03
lepton_That would be great16:03
kanzureit's embedded in the .exe file they distribute16:03
lepton_I'm working on some FFT algorithms for an open sound responsive light system for a burning man project, and that might have some relavence to actual EEG hardware development16:04
thesnark:) Cool!!16:04
lepton_but is definetly in a different direction from using existing commerical hardware16:04
lepton_anyway, I'd love to talk about that in more detail, but need to focus on another project for the moment16:05
lepton_I'll be back later, going idle for now16:05
thesnarkok16:05
lepton_anyway, pleased to meet 'ya16:05
thesnarkfor sure16:05
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fennlepton_: more info on your burning man project online anwywhere?16:49
fennJayDugger: sorry here it is http://designfiles.org/skdb/inventory/data/schema.yaml16:51
jrayhawkLepton: VMs on Gandi seem to be cheaper, FWIW.17:00
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kanzurejrayhawk: i'm doing a little project this weekend on amazon ec2. i don't know if this makes me evil or not17:23
jrayhawkThe thing that freaks me out most about EC2 is people using it as a backups solution.17:25
kanzuredo you mean s3? (storage)17:26
jrayhawkEr, yeah17:26
jrayhawkI can never keep track of their cloud nomenclature17:26
kanzuresay.io is going to be running off of ec2 shortly17:27
kanzureholy crap what a landing page17:27
kanzurethat was unexpected17:27
lepton_Hello All, I'm back17:29
lepton_fenn: Currently the burning man project isn't online anywhere17:29
lepton_However, we're about to release an Arduino FFT library we're developing for it, and that might be a good time for us to post some more information17:29
lepton_the basic premise is that we'll have a number of objects in a space, with each object having a microphone input and uC to do signal analysis and light up (or move in some cases) in reponse to the sounds of the environment17:29
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lepton_so you could go in the space and sing or whistle or chant play instruments or whatever, and we can program RGB color responses in all sorts of interesting ways17:29
lepton_ripples of color, easter eggs based on specific chords or patterns, interferance patterns between different spacial sources of sound17:30
kanzurethere's been a few projects that do that for visual input, but i can't remember their names17:31
lepton_We're hoping that by making it arduino IDE programmable it will be easier for people to program it to do neat effects we haven't thought of17:31
lepton_Kanzure: if you've got some down time, I'd be interested in hearing more about your iron man suit ambitions17:41
kanzurefirst, the guy who wrote that email originally was doing it in plastic17:42
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kanzureand using 3dsmax or some other mesh software17:42
kanzurei agree that vacuum forming or hydro forming would be the way to go17:42
lepton_ah, I just looked back and realized that might not actually be your project at all?17:42
kanzurei do have some funding for crazy exoskeleton projects though :)17:43
lepton_oh really?17:43
* kanzure nods17:43
kanzureyeah, open source hardware projects especially17:43
lepton_I'm loosely connected with the Berkley exoskeletan project through UVA17:43
kanzurenot UAVs?17:43
kanzurewhat?17:44
lepton_Including some people on that group who are interested in developing something else17:44
lepton_^University of Virgina17:44
lepton_This project (very old video that popped up on a google search); http://www.youtube.com/watch?v=BkBEDy3eA1o17:44
lepton_Unfortunately it's mechanical design has some pretty significant DOF limitations17:45
kanzuregiant backpack for one?17:45
kanzure:P17:45
kanzurehave you seen the sarcos designs?17:45
lepton_The hardware kinda sucks, but some good control sytesm modeling has come out of it17:45
lepton_^searching now17:45
kanzurehttp://www.youtube.com/watch?v=IYWd2C3XVIk17:46
lepton_Ah yes, the American suit that doesn't suck :p17:46
lepton_Yeah, I saw that one a while back17:47
lepton_So anyway, what do you have going on with suit funding / projects?17:47
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kanzureso we kind of are doing things backwards in here when it comes to hardware17:48
kanzureer, i mean, in the sense of business17:48
kanzurewe started with hardware ideas that we wanted to implement, so we've been working towards that17:48
kanzureso just be warned that a lot of this isn't actually a uh.. product17:48
kanzurecrazy mad scientist stuff, more than anything17:49
kanzurealthough the idea of a kit store has been pitched a few times and work has happened on that front (or on the modular open source hardware designs re: cubespawn et al.)17:49
lepton_^no worries, I tend to occupy that space a fair amount too17:49
kanzureso anyway, back in january i got some funding17:49
kanzureit's not really funding. it's a one-time (well, potentially more time) dump of cash17:49
kanzurethat i do not have to pay back17:49
lepton_lovely!17:49
kanzure:)17:50
kanzurethe deal though is that i can't spend it on my personal living expenses17:50
kanzurethe other two points are that i can't tell peeps how much money it was,17:50
kanzureand that i can't tell you who gave it to me17:50
kanzurealthough we've got quite adept at guessing names around here (heh)17:50
lepton_so what is it specfically funding for?17:50
kanzuremy crazy projects, but i expanded it to include stuff that goes on in here as well17:51
kanzurei was thinking of i.e. paying for nootropics for everyone17:51
kanzureokay, that's not particularly crazy17:51
lepton_haha17:51
lepton_Depends on the nootropics17:51
kanzurebut presumably you know about the hardware prototyping, apt-get-for-hardware work we're supposedly doing17:51
lepton_Though I've fallen out of that habit lately17:51
lepton_Yeap, as a matter of fact I've shown several people the youtube videos this weekend17:52
lepton_I particually like the "pull a debian" on hardware line17:52
kanzure:)17:52
lepton_so then the funding is pointed in the skdb direction?17:53
kanzureso getting people who are skilled in machining *and* know about debian, is asking for almost the impossible17:53
kanzureyes17:53
lepton_Well, there's always the EMC2 crowd for debian user machinists17:54
kanzureyeah :)17:54
kanzurefenn used to be do emc2 development apparently17:55
lepton_(and us {my partner Dan and I})17:55
kanzurehe was living in my closet for a while until he was seduced by california17:55
bkeroemc2?17:56
kanzurehttp://linuxcnc.org/17:56
lepton_As a tangent comment, the world desperatly needs better open source CAM (computer aided manufacturing / CNC toolpath generation) software17:58
lepton_I'd be delighted to see the opencascade framework be used to develop in that direction17:58
kanzurehave you seen heekscad and heekscnc?17:58
kanzureheekscad a wx gui on top of opencascade17:59
kanzureheekscnc does cam, but i've never used it so don't take this as a voucher17:59
kanzure*heekscad is a wx gui17:59
lepton_Yes, but imo heekscnc is still a long way from being a replacement for commerical CAM packages18:00
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lepton_I wish I had infinite time and could develop features, but sadly we broke down and purchased Solidcam last week18:01
kanzuresure18:05
lepton_On the up side, we can make complex toolpath files about 10 times faster than before, and it'll all parametric linked to our solidworks models so changes propagate up and down18:06
lepton_By that I mean our user workflow is about 10 times faster, toolpath calculation is pretty faster with whatever we use18:06
kanzurereverse engineering the solidworks fileformat has been on my todo list for a while18:07
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lepton_They're super liberal about sending out SDK's, in my experience18:07
lepton_not sure if that would help at all18:08
lepton_I think an open file format for parametricly defined 3d objects would be a very helpful thing18:08
lepton_but I don't know of such a format right now18:08
kanzureopenscad is trying to do that, but they don't export to CAD18:14
lepton_interesting18:15
kanzurethey just do stl meshes18:16
kanzurelepton_: do you have access to ISO docs?18:17
lepton_Yeah, as opposed to a parametric file format that would allow that parametric data to move between different programs18:17
lepton_As in the ISO standards documentation?18:17
kanzureyes18:17
lepton_Directly, no18:17
kanzureutexas.edu didn't have any access >:(18:17
kanzureit makes it hard to get work done18:17
kanzurei mean, when you're thinking about standards18:17
lepton_I can see if colorado.edu has access18:17
lepton_^yeap18:18
kanzureokay. if it does i'd like to write a scraper18:18
kanzuretorrent that shit18:18
lepton_I did that with some of the IEEE libararies a while back18:18
kanzurei did it with nature.com18:18
kanzure.. the whole thing.18:18
lepton_:)18:18
kanzureso if you'd like a copy, uh18:18
lepton_likewise18:18
lepton_I've got about 10 or so gigs of technical papers18:18
kanzureyay. maybe i'll send you a hard drive18:18
kanzurehttp://designfiles.org/papers/18:19
lepton_I'd be really happy to get some mirrors going18:19
kanzureif you could upload papers to that directory, that would be hot18:19
kanzureanother potentially fast connection to it is http://bio.cc/Bioinformics/papers/18:19
lepton_how should I go about logging in?18:19
lepton_sftp?18:20
kanzurei can give you an account18:20
kanzureyes18:20
lepton_Great18:20
lepton_send me an email and I'll get it going when I get back home18:20
lepton_I'm currently on a laptop at a coffee shop18:20
lepton_Most of my stuff is electrical or mechanical engineering related, which lots of focus on motor design and embedded electronics18:20
lepton_a fair amount of machining and nootropic related stuff, too18:21
lepton_and then a long long tail of misc18:21
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lepton_got it, I'll start upload this evening18:24
JayDuggerGood evening, everyone.18:24
lepton_Howdy18:25
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lepton_kanzure: what sort of work and development (in physical space) do you see as being highest priority for skdb for now?18:30
kanzuresimple packages that demonstrate the concept18:30
kanzureso i've been playing around with a laser cutter for lab-on-a-chip microfluidics18:31
kanzureanother high priority is fixing the name :(18:33
lepton_part-get?18:33
lepton_instead of apt-get :p18:33
lepton_thing-get18:33
kanzure"tangible get" was proposed a while back18:33
lepton_hmm18:33
lepton_tangi-get18:33
kanzurebut smari took it for his own implementation or something18:33
kanzureweird social dynamic things going on there18:34
kanzurehttp://tangibleget.com/18:34
kanzurei was thinking of using a name like "tangible kit" then ;)18:34
kanzureoh18:34
kanzurehttp://tangiblebit.com/18:34
kanzuresorry, it was tangible bit18:34
lepton_ahh18:34
kanzurei was thinking tangible bit -> tangible git -> tangible get18:35
lepton_That just reminds me of the "atoms are the new bits" arguments of last year18:35
kanzurei wish :/ people are infatuated with their bits (and no i don't mean drill bits)18:35
lepton_haha18:35
lepton_Back to simple examples, can you give an example of the workflow for someone who wants to reproduce a package18:36
lepton_Let's say I've got a laser cutter and want to make a microfluidics part/assembly18:36
kanzurewell ideally, the user just types "make blah"18:37
kanzurein high automation facilities you can imagine this then configuring cnc equipment and other automation tools18:37
kanzurebut for now we just have poor humans18:37
kanzureso the concept has been to use templated instruction sets18:38
kanzurei.e. like templates in web design if you're familiar with that18:38
kanzureand then just string them together via some software18:38
kanzureinstead of machine instructions, it's human instructions18:38
QuantumGyou mean slavery!18:39
kanzureyes18:39
kanzurei enslave my human body18:39
QuantumG:)18:39
JayDuggerHeh, heh...and once you've human instructions, you can wade into the morass of business processes.18:40
lepton_Hmm, seems reminiscent of GPS, or fast-food computer systems that give in-ear instructions to workers. In both cases the software is trying to guide to the human such that the human doesn't have to think at all18:40
kanzurewelll18:40
kanzurei have this simple system i can demo.. one sec18:40
kanzurethis is a distributed sms-based system for instructions18:40
kanzurehttp://adl.serveftp.org:8091/projector/projects/18:40
kanzuredo *not* press "RUN" anywhere18:40
kanzureit really sends out text messages18:40
QuantumG<kanzure> i enslave my human body   <- yes, it really looks like that's the situation from where I'm sitting ;)18:40
kanzurethere are dependencies on tasks, and stuff18:41
kanzureso users have to text back "ok i'm done" (well, right now just "ok" and "okay")18:41
lepton_Yeap, I like the idea of project projector a lot. I think some of the burning man groups around here could make use of something like that very well18:41
lepton_since a lot of them are working on big distruted projects18:41
kanzureoh i mentioned it yesterday. oops. i'm really not that proud of it, because i doubt anyone will use it18:42
kanzurei.e. why not just follow the instructions yourself ;)18:42
JayDuggerkanzure, you might  build in a market where humans could bid on doing those human instructions. :)18:42
lepton_...yeah, it seems more like a system for project management than a system for automating people's work18:42
kanzureJayDugger: you mean Amazon Mechanical Turk?18:42
lepton_^cool idea18:42
JayDuggerMore broadly, but yes. Shame it's been invented. <Duh EMOTICON HERE>18:43
lepton_It could be more physical than Mechanial turk. If it was popular enough on a local level you could get folks to come by and actually perform physical tasks18:43
kanzureone of the ideas i got hooked up on for a while was doing some sort of language that could be converted into gcode as well as human instructions18:43
lepton_But that sort of thing needs a critical mass of people18:43
kanzurebut not everyone can do programming like that ;)18:44
JayDuggerFoursquare's new (what jobs are here?)18:44
lepton_but then what kind of gcode18:44
lepton_because gcode is so not a stanard18:44
lepton_at least that's what I've been learning this year18:44
kanzureyeah, i agree, i was using that as a general token i guess18:44
lepton_most CNC machines need machine / brand specific gcode post processors18:44
kanzurei mean to say the general idea of generating control instructions18:44
JayDuggerGcode:machines::choreography:humans??18:44
kanzurefor a variety of different equipment18:44
lepton_It's kinda like modbus, another non-standard standard I've had to work with18:44
lepton_I've been using openSBP, which is a g-code similar language developed and open sourced by the company shopbot (you're probably familier, they're a commerical product similar to mechmate)18:45
kanzureyeah, ted whoever-it-is-that-runs-shopbot hangs out on openmanufacturing18:45
lepton_I've noticed that18:46
lepton_I wish his employees were as cool as he is :/18:46
lepton_I've had a less than great experience working with their tech's to develop a post processor so non-vetric software18:46
lepton_but all ended well, so I shouldn't complain18:46
lepton_Anyway, it seems to me that trying to develop skdb with a focus on open hardware manufacturing systems like the rep-rap or makerbot, or perhaps just open control software like EMC2, avoids the issue of dealing with an overwhelming number of propritary systems18:47
kanzureyes18:48
kanzurei want to get skdb hooked up with a reprap or makerbot18:48
kanzurein particular, i recently imported thingiverse.com into skdb package form18:48
kanzureer, well, almost18:48
kanzurethey are partial packages or stub packages18:48
kanzurebecause they don't have instructions with them18:48
kanzurehttp://designfiles.org/~bryan/thingiverse/thingiverse_packages/18:48
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kanzurehi quantumkat 18:49
lepton_If it plays well with EMC2 that opens it up to a lot of potential machines18:50
lepton_Since you can use EMC2 to run just about anything18:51
lepton_An interesting demo example would be using skdb to download the relavent files / instruct the user with material dependancies to make a makerbot or reprap make parts for itself18:54
lepton_That makes it immediately relavent and attainable for anyone with a reprap/makerbot18:54
kanzurefenn: how's your makerbot coming along18:56
lepton_alright folks, I'm heading back home19:11
lepton_will upload papers when I get there19:11
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JayDuggerWasn't fenn building a reprap?19:15
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-!- heath is now known as ybit19:20
ybitwhat's katsmeow's email?19:21
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lepton_Presently uploading to designfiles.org at the smoking hot speeds of 16 KB/S20:11
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kanzurelepton_: upload speeds suck. download is ok though :/20:18
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lepton_my up limit here is pretty slow, too20:22
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* kanzure messes with facebook app fbml bullshit :/20:26
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lepton_kanzure: Do you know if the SMESH and GEOM directories have changed in the pythonOCC SVN? I'm trying to follow John's ubuntu 10.04 compile process, but it seems like the SVN CO I did doesn't match what he's refering to from a few days ago20:45
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* kanzure is showing off http://pinkarmy.org/ in #startups at the moment20:46
kanzureheh i was at john's house last night for a crawfish boil20:46
kanzurei haven't compiled SMESH or GEOM, ever- or maybe just once- but in general i avoid them20:46
kanzureyou can always do svn co -r revision_id_here i guess20:46
kanzurefor the actual technical deets, see http://pinkarmy.org/images/Pink_Army_Cooperative.pdf (page 14 especially)20:47
kanzureand http://pinkarmy.org/pa_factsheet.pdf20:47
lepton_Pink Army looks like a pretty great project20:48
kanzure:)20:48
lepton_Sadly GEOM is critical to what I"m doing20:48
lepton_I don't think I care about SMESH all that much at the moment20:48
kanzurei'm supposed to be coding up some of the software behind PA one of these days (oops)20:48
kanzurewhat does GEOM have in it?20:48
lepton_I believe it's necessary for PAF?20:48
kanzureah20:48
lepton_And PAF is the central piece of my optimization work20:49
kanzurei have a fresh installation of ubuntu around here somewhere, i'll whip up some instructions 20:49
kanzurebut i'm not sure if that will be today or tomorrow20:49
kanzurehmm decisions decisions.. uh..20:49
lepton_Well, if you think it would be easy for you to accomplish, that could be great20:50
kanzuresure i can take a crack at it20:50
lepton_I think what we really need is a step by step guide for Ubuntu 10.0420:50
kanzurepythonocc is a pig to work with, you need a firm hand20:50
lepton_That would help people like Marcos, too20:50
kanzureideally a .deb is needed20:50
lepton_He and I seem to be in a similar position20:50
lepton_indeed20:50
lepton_Who was it that put together the deb package recently (the one that doesn't include GEOM or SMESH)?20:51
kanzurelepton_: Marcos Elgueta Soulat?20:51
kanzurei think thomas did one?20:51
kanzureMarcos seems to be in my database. must be him then http://designfiles.org/~bryan/meetlog/meetlog.txt20:51
lepton_Yeap, that Marcos20:51
lepton_The one who's posted a fair bit on the PythonOCC list recently20:51
lepton_The Aerospace engineering student20:52
kanzurewing optimization stuff20:52
kanzureyeah20:52
lepton_Yeah20:52
lepton_He seems to be having a lot of trouble getting GEOM compiled and working, too20:52
lepton_I've been reading through the list archives, but it's hard to figure out how much progress he actually make20:53
lepton_I'm under the impression that he's still not functional20:53
lepton_Nor am I20:53
lepton_with PAF20:53
kanzurethomas did a youtube video upload showing off some PAF features20:53
kanzureit was pretty neat :)20:53
lepton_yeap, I've seen it20:53
kanzureok, so i'll do this tomorrow20:54
lepton_I've actually even gotten that demo working in OpenSuse using some existing packages20:54
kanzureif you want to make sure that it actually happens, i highly recommend you bug me over the phone tomorrow at some point20:54
kanzureotherwise i might forget :P20:54
lepton_but everything else I do is in a debian environment, so I'd be really happy to forget about OpenSuse altogether for now20:54
lepton_Okay, if you've asked for it I'll buy you tomorrow :)20:54
kanzurebuy me huh?20:54
lepton_bug*20:54
kanzureheh20:54
lepton_meh, it must be getting late20:55
kanzurebtw if opensuse has packages, the 'alien' tool might be able to convert them20:55
lepton_I tried20:55
lepton_unsuccessfully20:55
kanzurelovely20:55
lepton_I don't think I still have the logs of the problem, though20:55
lepton_YMMV20:55
lepton_If I can get PAF up, I should be fairly home-free in happy Pythonic scripting land20:56
lepton_Then I can start doing so actual engineering!20:56
lepton_some*20:56
kanzurei'm doing a presentation in austin, tx in late june on pythonocc, btw20:58
kanzureat scipy201020:58
lepton_Yeah, Jelle mentioned that on the pythonOCC list20:58
kanzureyou should show up and check out my machine shop.. thing.20:58
lepton_Austin hackerspace?20:58
kanzureyes20:58
lepton_I'd actually be rather interested20:58
lepton_The question is time20:58
kanzurei know how you feel20:59
kanzurei'm actually doing two presentations at scipy201020:59
kanzureand two papers O_o20:59
lepton_We've got some conferences that our Scuba equipment will be showing at around that time, too20:59
lepton_What on?20:59
kanzurethe other one is on datapkg, basically apt-get for scientific data20:59
kanzurehttp://okfn.org/datapkg20:59
kanzureand while i'm at it, there's another presentation upcoming on june 12th/13th in boston at h+ summit 201021:00
kanzurehttp://hplussummit.com/speakers.html21:00
lepton_I might have to send an emissary to that one21:01
lepton_I've got some good friends in Boston21:01
lepton_This will actually be the first year of the past six that I won't be visiting Boston in the summer21:01
lepton_Nice line up of speakers21:01
kanzureyeah.. we even have the chuck e. cheese's guy.21:02
lepton_Congrats on being on the same pages as Kurzweil, Wolfram and Aubrey de Grey21:02
kanzurethey are amateurs21:02
kanzureahaha21:02
kanzurei'm messed up.21:02
drazakkanzure: who put together http://openwetware.org/wiki/DIYbio/FAQ/Equipment#Chemicals_and_Reagents_are_expensive.__How_can_I_make_my_own.3F__What_can_I_substitute.3F21:09
kanzureprobably jonathan cline21:09
drazakthey use my posts like 4 times21:10
kanzureheh21:10
drazakI dunno how I feel about that21:10
drazakI don't know how good of a reference I am :P21:10
kanzurei'm primarily responsible for this: 21:10
kanzurehttp://openwetware.org/wiki/DIYbio/FAQ#Has_DIYbio_been_in_the_news.3F21:10
kanzurelepton_: you should click^21:11
lepton_:clicks:21:12
lepton_I've actually seen a few of those articles before21:12
kanzurea few of them are about me/us in here :D21:13
lepton_yay, first directory is just about to finish upping to designfiles.org21:15
lepton_Only like 10 gigs to go to do a complete up 0_o21:15
kanzurei could just uh, snailmail you a hard drive21:15
lepton_You threw out the topic of nootropics earlier today, so perhaps that's next21:16
lepton_Yeah, it's possibly more time efficient21:16
lepton_Through I'd send it on a flash stick21:16
lepton_That's more volumetriclly efficient21:16
lepton_oh how my IRC client needs spell check...21:16
kanzurehttp://designfiles.org/papers/longevity/ might be particularly interesting21:17
lepton_I'll up my resveratrol directory after piracetam is done, that has some good longevity relavence21:18
kanzurenice.21:18
lepton_Though I'm really not a biologist21:18
kanzureneither are the biologists?21:18
kanzureanyway, it's time for me to go crash and act like my body is still capable of sleep21:19
lepton_Yeah, I'm heading to that point, too21:19
lepton_You central time zone?21:19
kanzureyes21:19
lepton_We're mountain, of course21:19
kanzure"a mile closer to the stars"21:19
lepton_More like 1.2 miles21:19
lepton_:p21:20
kanzuretime to rig up a few lasers to calculate the exact elevation, my friend21:20
lepton_well, probably 1.1 at my house21:20
lepton_I'll just ask my phone21:20
kanzurethat's +/- 10ft at best21:20
lepton_it knows the elevation of the cell towers, and can triangulate from there21:20
lepton_True, true21:20
lepton_my roommate does laser measurement of mirrors for the James Webb Space Telescope21:20
lepton_He has good measurement equipment21:21
kanzurenight21:22
lepton_Goodnight21:22
genehackerholy shit we can make Taq21:32
lepton_as in the polymerase?21:38
genehackeryeah21:39
genehackeras in polymerase21:39
lepton_researching - seems useful for a lot of processes21:41
genehackerexactly...21:41
lepton_how difficult is it to make?21:42
genehackernow if we could make some restriction enzymes21:42
genehackerhttp://openwetware.org/wiki/DIYbio/FAQ/Equipment#Chemicals_and_Reagents_are_expensive.__How_can_I_make_my_own.3F__What_can_I_substitute.3F21:42
genehackersee for yourself21:42
lepton_How are you physically making this? To what extent is it automated?21:42
genehackerI'm not21:43
genehackerit can be automated21:43
lepton_I'm generally curious about what DIY Bio people are using for hardware21:43
genehackerask one of the few people doing diybio21:44
lepton_At a previous job I was doing electronics / controls development for an automated chemical mixing system21:44
genehackera syringe bot thingie?21:44
lepton_Yeah21:44
lepton_I wonder how much that sort of stuff gets used, versus manual procedures21:44
genehackerquick question, could one potentially make any chemical compound if it had access to raw materials, catalysts, seperaters, heaters and such?21:45
genehackernot much in diybio21:45
genehackeror I don't think anyone at all who does diybio does21:46
genehackerthere aren't many people doing diybio21:46
lepton_I think it's well within the scope of arduino's and makerbots21:46
genehackerat the very most there are probably 20 last time I checked21:46
lepton_The hardware needs are pretty simple to do a lot of automated chemistry21:46
genehackerhow accurate do those machiens have to be?21:46
lepton_hmm21:46
genehackerany problems with the machine contaminating the samples?21:47
genehackerwhat are those machines used for in industry?21:47
lepton_The physical accuracy largely depends on syringe pump design/selection, and motors and gearing21:47
lepton_At my previous job it was being researched as a means of optmizing water treatment plant chemical dosage21:47
genehackerwell how accurate do they need to be? centimeters? millimeters? mililiters21:48
genehackerhow?21:48
genehackerfigure out how much chemical it takes to kill x% bacteria?21:48
lepton_bah, computer problems21:49
lepton_The system I worked on did image analysis on flocculating particles that formed because of van-der-vaal force based coagulation21:50
genehackeroh neat found a paper describing exactly what you were doing21:50
lepton_oh really?21:51
lepton_link?21:51
genehackeryeah on removing heavy metals from anaerobic sludge or something21:51
genehackerwww.bvsde.paho.org/bvsaidis/mexico26/iii-021.pdf21:51
lepton_yeah, it's done in sludge processes, too21:51
lepton_our stuff was drinking water focused21:51
genehackerimage analysis now that's pretty cool21:52
lepton_and didn't go all that far, failed startup company. I'd be interested in re-implementing it as an open hardware project21:52
lepton_yeah, we used OpenCV for image processing21:52
lepton_Worked out very well21:52
genehackerso the camera looked at the samples to see if they were different colors to see if it was one thing or a another or measured the different degrees of floculation21:52
lepton_I had to develop an improve volume estimage singe we were using a single camera and had to estimate volume of translucent particles from 2D images21:53
genehackerto a degree then21:53
genehackerneat21:53
genehackerjeez I didn't even know it was possible to do that with something as simple as a camera21:53
lepton_We started off with USB webcams, but ended up doing a PCB with a 5 megapixel Micron/Aptina CMOS sensor21:54
genehackerso usb webcams aren't good enough or were cheaper?21:55
lepton_Ran it all on an embedded linux board, the Gumstix Overo (which is basically just an OMAP 3530 ARM processor)21:55
genehackeron gumstix too?21:55
lepton_yeah, trying to do it on USB on a propritary logitech webcam wasn't very consistent21:55
lepton_the device needed to operate for months at a time, and it would drop out21:56
lepton_but that was only a temporary fix anyway because we had delays in getting the CMOS sensor we wanted in the first place21:56
lepton_so we got a driver working for that and all was pretty well21:56
genehackerbut it would work consistent enough?21:57
lepton_We did processing on the image at about 10 FPS at 1480x1080 or something aroudn that21:57
lepton_The USB webcams were never very good (we used the logitech quickcam 9000)21:57
lepton_but the CMOS sensor was perfectly reliable21:57
genehackerwhat needed to be done to make it consistent, adjust the white balance or what not?21:57
kanzurehttp://www.stereopsis.com/flux/21:57
lepton_The image analsis itself, or the hardware communication?21:57
genehackerso the hardware communication was harder with webcams?21:58
lepton_Byran, that's awesome21:58
lepton_aren't you supposed to be sleeping?21:58
kanzureuhh uhhhh21:58
kanzurethis is bryan's uh21:58
kanzurefuck.21:58
genehackerthat software assist with sleeping21:58
* kanzure hides21:59
lepton_yeah, comm dropped out with irregularity on the usb systems. the CMOS sensor connected via a 12 (I think) bit parallel interface to the ARM processor21:59
genehackeroh don't worry about kanzure it's just his clone or he's sleep typing again21:59
genehackerso what about if the webcam was connected to just a laptop would you have that problem?22:00
lepton_Hmm, I don't think we actually tried running it for days at a time on a regular x86 computer with a desktop operating system22:01
lepton_that probably would have been a good idea for debugging22:01
genehackerwell I don't think I'll be running it days at a time...22:01
lepton_But we ultimately wanted a sensor on our PCB22:01
lepton_the USB stuff was just a dev workaround while we waited for hardware22:01
lepton_What are you doing?22:02
genehackernothing, mainly considering giving reprap pick and place capability22:02
genehackeralso making Taq22:02
genehackerbut that doesn't require a webcam22:02
lepton_oh I'm really interested in doing machine vision for pick and place22:02
genehackerreally?22:03
lepton_and doing it with OpenCV like that other project22:03
lepton_Oh yeah! I've talked about it on numerous occasion22:03
genehackerwell if you want, want to make a pick and place head for reprap?22:03
lepton_Because pick and place is one of our biggest needs, AND we have a CNC that could do it22:03
lepton_but we don't have control22:03
genehackerthat's the main problem22:03
lepton_sure, I'd be in to that22:03
lepton_I even saved a few links on how to do it a while back22:03
lepton_though suction22:03
genehackeryup22:04
lepton_we just need time / money to do that22:04
lepton_unfortunately I haven't had a pay check in about 9 months22:04
genehackerI have a tool head design for one, except I need to modify it to accomodate a camera22:04
genehackerwell I'll I need is software that can recognize where an arbitrary component is with a camera22:04
lepton_Well, I can CNC things to try out if you have cad files22:04
lepton_You can do that very easily with openCV22:05
lepton_I could definetly provide guidance22:05
genehackerany arbitrary component?22:05
genehackeras in part number, part shape?22:05
lepton_well, define arbitary22:05
lepton_if you have a part number on the part, and a database / BOM to reference, that goes a long way22:05
genehackerelectronic components have standard numbering and part shapes22:06
lepton_but there's so much variation in packaging22:06
lepton_even within a part22:06
lepton_That's true, and not true22:06
lepton_I mean, there are standards, but they're not strictly adheared to at all22:06
lepton_We do a lot of by-hand building, and a fair amount of having board houses assemble for us22:06
genehackeroh well then it's not required22:06
lepton_and it's never a complete straight shot with packaging, there are usually weird variations22:06
genehackerthis just means one will have to place components in organized slots instead of unorganized ones22:07
lepton_However, I think that if for each project an operator uses the pick and place machine's camera to take a reference picture of each piece, that tremendouly helps the situation for image recognition22:07
genehackerso component position is all I really need22:07
lepton_Yeah, and that's standard for circuit CAD post processors22:08
lepton_I think that image recognition on the parts can help a good bit with placement, too22:08
genehackeryeah as I said all I need is component position22:09
lepton_I should get to sleep, too22:09
genehackersleep is for slackers!22:09
lepton_umm... lucid dream research, then?22:10
genehackerok go ahead22:10
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fennopenscad could theoretically use opencascade bindings to do stuff and export as step23:11
genehackeruse opencascade bindings to manipulate openscad code?23:13
genehackerso we can actually have real smart dimensions?23:14
genehackerif you do that, that would make you incredibly awesome23:14
fenntonight's project: http://fennetic.net/irc/nema17_nema14_adapter.jpg23:20
fennugh. internet is fubared here23:20
genehackerreprapping?23:21
fennkanzure: you asked how the reprap was coming: http://fennetic.net/irc/minimendel.jpg23:26
fennstill need to do belts and electronics23:26
fennand make the extruder23:26
fennbtw it's not a makerbot23:26
fennmakerbots are the devil23:26
genehackerI saw the original makerbot once, should I have driven a stake through it's extruder?23:38
genehackerand yes they are evil23:39
fenni find closing my eyes to be more effective than changing the white balance of my monitor23:39

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