2010-11-24.log

--- Log opened Wed Nov 24 00:00:08 2010
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kanzureholy hell look at the spam https://twitter.com/meidesign07:02
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kanzureoh it's an anagram for charles07:59
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archelsyes!08:16
archels:)08:16
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kanzurehi Nebososo 08:28
Nebososohi08:33
kanzurewhat's up?08:37
NebososoTrying to find out more about emotiv EPOC on Linux :p.08:39
archelsno battery meter for you!08:42
archels(afaik. Daeken?)08:42
kanzureNebososo: lookup 'emokit' on github08:51
NebososoI will, thanks, kanzure08:51
archelsoh, sorry, I thought that was understood.09:00
archelsalso #emokit, but it has been rather dead.09:00
NebososoI'll see what I can find, archels.09:02
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charlack09:07
charlFreenode is doing funny stuff.09:07
charl< archels> Nebososo: Essentially, Daeken hacked the encryption, and someone named skadge laid the beginnings of a library. It's not very plug-and-play, but I think you can at least access the raw sensor data.09:07
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kanzure"hacked the encryption" -> actually, just found the encryption key09:08
archelsWell, reverse engineered it.09:08
NebososoInteresting enough...09:09
NebososoI have to go now, thanks for the general directions, everyone.09:17
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kanzurealternative 23andme code: 8YGK7C09:22
kanzurei think they got overloaded09:22
kanzurehm.. http://www.using-hydrogen-peroxide.com/hydrogen-peroxide-as-mouthwash.html09:25
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kanzurehackerspacesg is confusing.. is "Wong Meng Weng" the same person as "Meng Weng Wong"?09:37
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kanzurehttp://groups.google.com/group/nanoengineer-dev10:58
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ybithrm11:08
ybiti bought the kit11:09
ybitsome secret agency somewhere will now develop a virus to attack my genetic deficiencies ;)11:09
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archelsHow much of the genome do they sequence, anyway?11:23
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kanzurearchels: they aren't sequencing the genome really11:34
kanzurethey are using illumina plates/array to do dna hybridization tests to figure out which SNP you have at a particular location (rs id number)11:35
kanzurewait, are they doing dna hybridization? or something else11:36
archelsrs being?11:42
kanzureall of the chromosome locations for snps are recorded with an rs id number11:43
kanzurewhich you'll see in datasets like dbSNP from NCBI11:43
kanzurei forget what it stands for11:44
kanzurehackerspaces hackathon for membership management http://blog.hackerspaces.org/2010/11/22/announcing-the-opendoor-hackathon/11:46
archelsaha11:46
archelsSo how many SNPs do they scan for?11:46
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archelskanzure: Looks like DNA chips.11:53
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archelskanzure: Seen http://www.illumina.com/documents/products/datasheets/datasheet_infiniumhd.pdf ?13:03
kanzureiirc 23andme scans for about 1000 SNPs?13:06
archelsI'm not sure13:07
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kanzurehi infomorph.13:25
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kanzurehi QuantumG, hi r0y 14:09
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QuantumGhey14:12
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kanzuresarrus linkage http://blog.makerbot.com/2009/12/12/beautiful-makerbot-printable-sarrus-linkage/14:45
Noahjthat's awesome! 14:50
NoahjI'm still always put off by how many steel parts are in things like that 14:50
Noahjbut it's getting better 14:51
Noahjerm, I think that "always" was unnecessary 14:51
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kanzurevia lee nelson re: ne-116:38
kanzurehttp://machine-phase.blogspot.com/16:38
qgqgsaw that16:39
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kanzureQuantumG: did you also see http://diyhpl.us/cgit/nanoengineer16:39
QuantumGcool.16:40
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kanzurewhat? http://www.somewhereville.com/blognano/dgallis_nanogallery_16_large.jpg17:48
kanzurethat was from http://www.somewhereville.com/?page_id=1017:48
kanzuregears http://www.somewhereville.com/blognano/dgallis_nanogallery_14_large.jpg17:49
kanzurewell more like "spinning disc things"17:49
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QuantumGstuff you can't build but can happily design18:04
kanzureheh18:09
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QuantumGya need to design two parts that fit together, and only fit together if they are both "perfect".. and when they're combined they're big enough or have some sticky property that allow them to be separated from a sea of malformed parts.18:12
QuantumGI believe this is called "chemical engineering"18:12
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kanzurewell, more specifically, it's the sub-discipline of self-assembly and nanoscience18:15
kanzure(seriously, "self-assembly" is googleable)18:16
QuantumGthe selection process is the point I was making18:16
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memorexkanzure: any idea where i can find free online books for download18:30
memorexim having some trouble18:30
QuantumGhttp://free-books.dontexist.com/18:32
memorexthank you18:32
kanzureheh. also gigapedia, but free-books.dontexist.com (libgenesis) is what i would suggest18:36
memorexyeah it didnt pull up what i wanted18:39
QuantumGyou often won't find what you want on that site.. but if you look, you might find what you need.18:39
superkuhgigapedia registration is closed again.18:40
memorexfuuuu18:40
memorexim looking for children science fiction books for my cousin18:41
memorexits his birthday and I am getting him a kindle and im going to put some books he would like on there18:41
kanzureoh there's a torrent of 14,000+ scifi books out there18:41
memorexyeah I think I should try and find it18:42
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kanzurehi fitzsim 18:50
fitzsimhi kanzure 18:50
kanzurelogs: http://gnusha.org/logs/18:51
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kanzurehi JayDugger1 18:53
fitzsimdoes Lee hang out here too?18:53
JayDugger1Good evening, all.18:53
fitzsimkanzure: just wanted to let you know about some NE-1 patches you may find useful18:54
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fitzsimkanzure: there are a bunch of patches for building against up-to-date versions of dependencies in http://fitzsim.org/packages/NanoEngineer-1-1.1.1.12-0.3.fc12.src.rpm18:56
fitzsimkanzure: are you working on a Red Hat-based distribution?18:56
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JayDugger1The 23andMe discount code "48DRPU" definitely works.19:04
JayDugger1I just used it to buy my girlfriend's Christmas present.19:04
JayDugger1As of today, I can yet download my raw data from 23andMe.19:04
JayDugger1By 01 January at the latest, I should know whether the current promotion permits the download of raw data.19:05
JayDugger1The promotion requires a 12-month, auto-renewing, subscription to their update service.19:07
kanzurefitzsim: i'm on debian19:07
JayDugger1This costs $60/year.19:07
kanzurefitzsim: where did the patches in that .rpm come from?19:08
kanzurefitzsim: lee sometimes hangs out here.. not lately though19:08
kanzurefitzsim: i have some funny stories about lee :) sometimes the simplest solutions tend to elude him19:08
kanzureheh: http://google.com/search?q=technologiclee+nanoengineer19:09
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fitzsimkanzure: I wrote the patches as part of getting NE-1 building on Fedora 1319:18
fitzsimkanzure: if you want to extract them on Debian you can use: rpm2cpio | cpio -idv19:19
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kanzurefitzsim: i'll take a look19:25
kanzuredebian notes: http://diyhpl.us/~bryan/irc/nanoengineer/compile_nanoengineer19:27
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kanzurelee's notes: http://diyhpl.us/~bryan/irc/nanoengineer/NE1InstallScriptFragment19:29
kanzureRedeemer: i sent you an email re: hotels19:30
kanzurefitzsim: i'm not familiar with the rpm format but is there a set of .diff files in there somewhere?19:31
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kanzurejrayhawk: you wouldn't happen to also be a redhat fanatic would you19:32
kanzurepeculiar reply to my ne-1 announcement http://groups.google.com/group/openmanufacturing/msg/501d9f84ecd95f56 someone's really using this on a daily basis?19:35
kanzurei don't see how stl files would help for anything on the order of 100k+ atoms19:37
QuantumGyou should reply with "patches welcome"19:37
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fitzsimkanzure: yeah, a .src.rpm file contains the spec file which has build and installation rules, the original source tarball, and a bunch of .patch files that are applied during the RPM build process19:39
fitzsimkanzure: are you able to apt-get install rpm2cpio?19:39
kanzureit was already installed (stuff like this happens often)19:40
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fitzsimkanzure: are you able to extract the patch set?19:42
kanzurewas that what it is? i just saw lots of binary data flash before my eyes19:42
fitzsimyou have to pipe the output to cpio19:43
kanzureoh i wonder why i didn't see the files19:43
kanzureok i see cpio created the files19:43
fitzsimhave a look at NanoEngineer-1.spec19:43
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kanzureok i see 19:44
kanzurepatch10 and patch11 are things that were updated recently in the upstream repo actually19:44
kanzurewait did you submit all of these to them?19:44
fitzsimno19:44
kanzurehttp://diyhpl.us/cgit/nanoengineer/log19:44
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kanzurecheck out the 2009-07-10 commit, which seems to be related to patch10 and patch11 in NanoEngineer-1.spec19:45
kanzureuh in particular commit 21619af5d41eec4436619a7a05cfe42989cc4dc919:45
kanzureok so i guess these were never included19:45
fitzsimyeah, that's just a small language change for newer versions of Python, I'm not suprised the patches would be similar19:46
kanzurethere's a quickly growing and phantom todo list for ne-119:46
kanzurefirst there's server infrastructure stuff like snapshots/package building/releases, then epydoc, pylint, etc.19:47
kanzurethen actually getting the packages to build and uh, work19:47
kanzurei'm p. sure there's some auto-deb/rpm packaging scripts in there somewhere19:48
fitzsimare you working on making the Nanorex Bugzilla public?19:48
kanzureyeah, they were hosting it somewhere private and either the hosting company will send me a backup or i'll write a spider and convert it to something that doesn't suck19:49
kanzurei'd really like to use http://bugseverywhere.org/ but it's not quite stable yet :( (keeps bug state in the git repo under .be/)19:49
kanzurelikewise for their mediawiki installation.. http://diyhpl.us/nanoengineer is actually an ikiwiki created out of nanoengineer.git19:50
kanzurei'm not sure if mark will go for migrating the mediawiki content to ikiwiki or not19:50
kanzurebut i really like the idea of keeping everything under nanoengineer.git19:50
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fitzsimkanzure: neat, I've wanted something like bugseverywhere.org ever since Monotone was released19:55
kanzureunfortunately the BE developers don't believe in release versioning or stable releases or something :(19:55
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fitzsimhmm, well hopefully the idea will catch on anyway19:57
fitzsimin the meantime, yeah, running a Bugzilla server isn't trivial I've been told19:57
paskyif you like distributed bugtracking, you might find fossil interesting19:57
kanzurehttp://fossil-scm.org/ right19:58
QuantumGrunning a bugzilla server is trivial19:58
kanzurei'm not sure bugzilla is a good idea in general, sysadmin nonsense aside19:59
QuantumGwe use trac at work.. combined wiki/bug tracker.. it's more simple than bugzilla19:59
QuantumGintegrates with revision control, etc20:00
kanzurefitzsim: http://ikiwiki.info/20:00
kanzurefitzsim: for some of the repos on diyhpl.us, when you push new commits, the post-update hooks fire and ikiwiki rebuilds the relevant pages20:00
kanzurei'm not a big fan of mediawiki or wikis that decided to totally ignore version control systems20:01
fitzsimnice20:01
paskyif BE's first bulletpoint is not way oversimplified, i think it's really misguided; imho bugs and content should not live at a single branch even though it's tempting as immediate idea - you get into immense headaches since you _will_ find that you should really make changes to some bugs way too late after all the commits are pushed out etc.; fossil seems much more sensible in this regard, but then again, i like git20:01
kanzurepasky: if you need to change a bug then you should commit your change20:02
kanzurethis way bugs have revisions stored too20:03
kanzurefenn: are you alive20:03
fitzsimkanzure: are you administering diyhpl.us?20:05
kanzurefitzsim: yes. jrayhawk is also a meta-sysadmin i guess20:05
kanzureother projects: http://diyhpl.us/cgit/20:06
kanzurethe reprap repos are kind of cluttering up the screen at the moment but i'll fix that soon20:06
kanzureother items of interest are skdb.git (apt-get for hardware) and meetlog.git20:06
kanzurealso lolcad.git 20:07
fitzsimkanzure: so whatever you use as a bug tracker will be hosted there too?20:08
kanzureright20:08
kanzurethat's the idea20:08
fitzsimmakes sense20:08
kanzurediyhpluswiki.git is a good example of ikiwiki integration.. http://diyhpl.us/wiki is the html-generated output20:09
kanzurehaha jrayhawk edited my realtime typing typos (i haven't looked at recentchanges in a while)20:09
jrayhawkthey made things hard to read :mad:20:15
kanzurewell, yes :(20:20
kanzurejrayhawk: can you play the role of piny public relations20:20
kanzurealso suggestions for what to do with all these patches from fitzsim's rpm would be hot20:20
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jrayhawkbleargh. i should write a useful introduction20:26
fitzsimkanzure: have you successfully built NE-1 yet?20:27
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kanzurefitzsim: a while back, not in the last month.. guess i should get around to that :)20:34
fitzsimkanzure: ok, I would just use my patches as a guide for when the build gets stuck20:34
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kanzurealright mark! :) http://groups.google.com/group/nanoengineer-dev/msg/e407189995727a3120:40
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kanzurestalk: yohko hatada21:04
kanzurehm http://uk.linkedin.com/pub/yohko-hatada/b/806/ab121:05
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kanzurehi Ian_Daniher 21:09
kanzureso, generating/rendering BOMs for electronics projects21:09
Ian_Daniherhey kanzure 21:09
kanzureparse schematic file -> get out BOM ?21:09
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Ian_Daniherme:  know what would be awesome, and slightly related to SKDB?21:09
Ian_Daniheran electronics bill of materials creator21:10
Ian_Daniherthat a) worked with GIT Bryan:  agreed. me:  and b) plugged in with findchips and friends to figure out the best suppliers and the best pricepoints21:10
kanzurewhat's findchips? i'm more familiar with octopart and digikey21:10
kanzureoctopart is a search engine on top of electronics datasheets that has slightly parameterized data21:10
Ian_Daniherfindchips is an aggregator like octopart21:10
Ian_Daniherit's simpler21:10
kanzureuh. okay.21:10
kanzuresimpler interface?21:10
kanzurebtw i have octopart.py in skdb.git somewhere21:10
kanzurei was using the octopart api but i don't know where i was going with it21:11
kanzurebasically people have to write down what parts they are using.. i don't see a way around this21:11
kanzurenow, most people use spreadsheets, so a spreadsheet-to-bom is doable, but i don't see how a BOM is much different from a spreadsheet?21:11
Ian_Daniherit's not, really21:11
Ian_Danihermost people I know use google docs for BOMs21:11
Ian_Daniheror vendor-specific tools21:11
kanzureyou mean a spreadsheet on google docs?21:11
Ian_Daniheryup21:12
Ian_Daniheranyway, vendor-specific tools are great for larger companies, but one of the advantages of being a startup is that you're supposed to be nimble21:12
kanzurebasically people have to write down what parts they are using.. i don't see a way around this21:12
kanzureelevenarms (who comes around every once in a while in here) wrote some javascript where users can browse to a vendor's site and then import the product into a BOM back on another window/page21:13
Ian_Daniherand a FOSS BOM manager which constantly checked pricepoint of supplies at various quantities and various vendors would be awesome21:13
kanzurewhat does a BOM manager do21:13
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fennit retweets deal alerts~21:16
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Ian_Daniherkanzure: keeps your BOM in order, shares it with other people, etc21:17
kanzurewhat21:18
fennanyone have access to this article? http://journals.cambridge.org/action/displayAbstract;jsessionid=5DC616A3740BFE7B23C25262F2502723.tomcat1?fromPage=online&aid=181672021:18
kanzurethis doesn't sound BOM specific really21:18
fenni had a BOM on google docs recently, it was somewhat painful21:19
fennmuch rather just put a .csv in git21:19
kanzurefenn: http://groups.google.com/group/getarticles but they will post the pdf to scribd instead of somewhere convenient21:19
fennalthough some way to specify structured dependencies (order this AND this else that)21:19
kanzurei think .csv is a pretty good structure21:19
Ian_Daniheragreed21:20
kanzurei don't see complicated abstract logic trees in BOMs often21:20
Ian_Daniherbut it's a pain to manually track down vendors 21:20
kanzurewell either you've built it and know what to buy or you don't21:20
fennwhy scribd?21:20
kanzurehttp://octopart.com/somehow_buy?vendor=atmel&chip_id=5409149141021:20
Ian_Daniherthat doesn't account for the high price volatility of silicon components21:20
fenncan i just request that they not do that?21:20
kanzurefenn: sure try asking21:21
kanzurefenn: i dunno why they like scribd so much anyway21:21
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fennheh the requester is already on getarticles21:21
Ian_Daniherkanzure: that'd be cool, yeah21:21
kanzuremostly getarticles is cory tobin and rss-wunderkid aaron swartz21:21
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memorexFUUUUCK21:22
memorexDAMN YOU BOOKS21:22
kanzureIan_Daniher: there's two ways i can see that going down21:22
kanzureIan_Daniher: one, a company that specifically takes in a BOM and somehow magically handles an optimization of what to order and from where21:22
kanzureand then slowly replaces "order from multiple vendors" with their own deals as they can manage it21:22
kanzuretwo, skip the company part and just write a web scraper/spider that can submit forms on multiple vendor websites21:22
Ian_Danihertwo would be neat21:23
kanzurei.e. "buy part xyz from sparkfun" -> it goes off and fills out the form and buys it for you from sparkfun.com21:23
Ian_Danihermhm21:23
kanzurethe problem is that writing scrapers/form parsers like that isn't really scalabe, fun, or elegant21:23
fenn'from sparkfun' kinda makes it pointless though?21:23
kanzurepresumably edic or ebxml was supposed to solve that but they all got caught up in SOAP and B2B masturbation21:23
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kanzurefenn: bad example. i think "from digikey" is also pointless?21:23
fennyes, the idea is to specify as little as possible21:24
kanzureoh i thought you meant that sparkfun is already an aggregator (not an oem)21:24
kanzurewell sure21:24
fennor rather, as loose as possible (not quite the same thing)21:24
kanzurebut i mean once it finds out that it wants to use sparkfun, to have the interfaces to go do that21:24
kanzurenow, it would be spectacularly cool to convince sparkfun (et al.) to use our super-spectacular server protocol21:24
kanzurebut that won't happen21:24
kanzure(as it turns out, elevenarms has sparkfun contacts)21:25
fennmeh, just making  a plan would be a huge step for me21:25
kanzure"1. buy this from these goons" ?21:25
fenn"2. ???"21:25
kanzurehuh?21:25
kanzurewait and pray they didn't fuck up your order21:25
fennhttp://memegenerator.net/21:26
kanzurewow mark just got the ne-1 bugzilla backup21:26
kanzurei did not expect codesion to actually give him a backup of it21:26
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fennbugzilla is useful data yes/no/maybe?21:28
kanzurethousands of bug reports for ne-121:28
kanzurehe was paying for it to be hosted somewhere O_o so i figure i should put a stop to that21:29
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kanzurefenn: have you clicked around in nanoengineer.git yet? http://diyhpl.us/cgit/nanoengineer/tree/tags/cad/21:33
kanzurealso http://groups.google.com/group/nanoengineer-dev even if you'll never read it21:34
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* fenn makes a note in his irclogs21:38
kanzurefor pretties: http://nanoengineer-1.com/content/index.php?option=com_content&task=view&id=40&Itemid=5021:40
kanzurehttp://www.somewhereville.com/?page_id=1021:40
kanzureapparently mark was the one who funded the "nanofactory animation" http://www.youtube.com/watch?v=zqyZ9bFl_qg21:41
kanzurefenn: i was also hoping you'd have some clever snark about http://diyhpl.us/cgit/meetlog/log/21:54
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kanzureoops sorry i must have had a brainlapse.. i recall your snarks from the other day actually21:55
fennnice dna poster21:56
fenn(somewhereville)21:56
kanzureyeah i didn't know about nanorex/paul rothemund21:57
fennhuh?21:57
kanzureall this structural DNA origami stuff that nanorex/ne-1 is talking about?21:57
fenni bet i could prove otherwise, but i'm too lazy to do so21:57
kanzuremark paid paul to go do some dna origami stuff with ne-1 in winfree's lab21:57
kanzurecite: bottom of http://www.nanoengineer-1.com/content/21:58
fenni think it's funny that your journal consists entirely of git commit messages21:58
kanzure"After learning about our plans to develop a DNAO module for NE1, Dr. Rothemund invited me and my daughter to visit the Winfree Lab at Caltech to learn about scaffolded DNA origami first hand"21:58
kanzure"He wanted to share the experience of designing, fabricating and imaging our own design. We jumped at the opportunity and soon after we arrived on campus to begin working with Paul. My daughter and I kept a detailed journal of what we did and published it (with photos) on the NE1 wiki"21:58
kanzureoh fooey winfree offered me a job a few years ago.. i should stop by his lab while i'm on campus next month shouldn't i :x21:59
fennyeah that's been on the nanorex site as long as i've been aware of it21:59
kanzurehuh? you said "but i'm too lazy to do so"21:59
kanzureer i should have quoted "i bet i could prove otherwise"21:59
fenni mean i could probably find some instance of you talking about nanorex/rothemund22:00
fennblarg anyway22:00
* fenn grumbles about slow milling machines22:00
kanzureno my knowledge of nanorex has been recent mostly22:00
kanzurei'm a little surprised that the first public release of ne1 was 2008 though22:01
kanzureweren't you blabbing about it earlier than that?22:01
fennweird, they wanted to put advertising in ne-122:02
kanzureoh dear mark is trying to explain git http://www.nanoengineer-1.net/mediawiki/index.php?title=Checking_out_NE1_source_code_from_the_repository22:03
fenn2008-04-04.log:08:28 < fenn> did you see this? http://www.nanoengineer-1.net/mediawiki/index.php?title=DNA_Origami_-_Creating_the_Nanorex_logo22:03
kanzurestep 4 looks all wrong22:03
kanzurewell at least he's recommending pep822:04
kanzurefenn: further evidence that i'm just going in circles22:08
fennheh we were just discussing making a molecule construction set just like this yesterday http://www.flickr.com/photos/tweakie-cnc/3430399771/22:10
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kanzureping pong balls and toothpicks not good enough for you? haha22:11
kanzurebugzilla db http://diyhpl.us/~bryan/irc/nanoengineer/polosims-mysql.dump.gz22:21
kanzurenow what should i do with it22:21
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kanzuremayko: so you need a gear riggup for your spectrophotometer?22:24
maykothat's the plan22:25
maykofortunately there is a half cannibalized VCR in the closet mwa hahah22:25
kanzurehttp://topologicoceans.wordpress.com/2010/11/25/diy-spectro/23:04
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