2011-04-10.log

--- Log opened Sun Apr 10 00:00:10 2011
movvyhello00:03
movvyyou should wake up00:03
movvywhat can tell you right now isn't the time that changes your life00:03
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QuantumGis that sentence supposed to make sense?00:07
movvyi agree thats ridiculous00:14
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kanzuremovvy: ok, i'm awake00:36
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JayDuggerHeh, heh..."You don't turn a dinosaur into a mammal by explaining the virtues of fur."05:49
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facefacewake up!07:22
facefaceany Doors fans?07:23
facefaceJim is pretty cool07:23
facefacebio.cc seems to be down unfortunately07:24
kanzuredo you need a place to put the files07:29
facefaceyup07:29
facefaceI can try bifx.org, but I know they are running low07:32
kanzurejrayhawk: is this something we can handle on cysteine07:33
faceface4.4G unzipped, currently tgz'ing07:34
faceface(THL)07:34
facefaceI'll just check on the JMB job07:34
faceface1/3 complete (11,323 out of 30,555 pdfs), 23G07:36
facefaceI figure I can grab 3-5 more07:39
faceface3.4G Apr 10 16:40 THL.tar.gz # copying to bifx.org07:45
facefaceTHL.tar.gz                                      0% 8192KB 356.1KB/s 2:42:52 ETA07:46
* faceface goes for Drug Discovery Today: Technologies07:58
facefaceOpen access solutions available for this jorunal!08:20
facefacehttp://www.elsevier.com/wps/find/journaldescription.cws_home/505508/description#description08:20
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kanzurehi movvy08:29
facefacehttp://www.sciencedirect.com/science/journal/17480132 # nano today ?08:33
facefacehttp://bifx.org/~dmb/DDTT.tar.gz # Drug Discovery Today: Technologies08:53
facefacehttp://bifx.org/~dmb/DDTDM.tar.gz # Drug Discovery Today: Disease Mechanisms08:54
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facefaceI'm tempted to start work on jrnls like nature protocols, but it's such a pain to de-convolute the html09:17
facefaceis there some way I can give people proxy access via this server?09:17
facefaceemail on the 4th of March "your computer account bolser@molgen.mpg.de will expire in about 40 days" ...09:19
kanzurean http proxy? sure.. use squid or something09:19
facefacehow many languages are they bundling!09:23
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Utopiahhttp://marciovm.com/i-want-a-github-of-science09:32
kanzuremeh there wasn't much there, Utopiah09:34
kanzureeven eric meltzer's spammy "OMG PROTOCOLS, BUT SOCIAL !! WITH LIKES !!" was a better idea09:34
facefacehttp://bifx.org/~dmb/Nano.tar.gz # Nano Today09:38
facefacehi Utopiah09:38
kanzurehow big is that09:38
faceface271M09:39
kanzureok. 8min remaining.09:39
faceface2hours remaining on THL xfer09:40
facefacesquid is still configuring...09:40
facefaceI'm doubtfull it'll run on the DMZ09:40
kanzurei don't know if squid will do a pass-through proxy like you want, btw09:40
facefacewas thinking ssh -D 2343 -g localhost may work, but ssh on DMZ doesn't support -D09:41
kanzureyou don't want to give everyone ssh access09:41
kanzureoh, you mean port forwarding over ssh09:41
facefaceyeah, ssh (newer) has socks built in09:41
facefacenever tried it with -g though09:42
facefaceif people promise not to install any 'disruptive technologies', I'd be willing to share the last days of my account there09:43
kanzurethat seems like a stretch :p09:43
facefaceheh09:43
kanzuresince the whole point is to download stuff09:43
facefacesorry, I just mean, not start a hackathin09:43
facefacethon09:43
Utopiahfaceface: hi, why do you want a proxy? why not call the script from a ruby/perl/whatever page accepting users target pages?09:44
facefaceUtopiah: the ip address of this server gives access to becoup journals09:45
kanzureUtopiah: he wants a proxy to let others (like you and me) to use the machine, without giving us straight up access via ssh09:45
facefacebut I'm lame at writing wget scripts09:45
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Utopiahok, could try http://httpd.apache.org/docs/2.0/mod/mod_proxy.html since you already have Apache running, you can even allow just to proxy content from Elsevier websites09:50
facefaceEvangelists for Open Science should focus on promoting new, post-publication prestige metrics that will properly incentivize scientists to focus on the utility of their work, which will allow them to start worrying less about publishing in the right journals.09:51
faceface100% agree09:51
facefacealthough at a conference I was at, people were all like, meh, publication schmublication09:52
facefaceUtopiah: sorry, the apache instance is a different box09:52
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Utopiahfaceface: dirty solution, you add a cron in the other box that hourly wget the source of a wiki page anybody here can edit, append the cleaned URLs list, start the script if it is not running then scp/rsync/whatever back to the server10:05
facefacewow, thats dirty!10:06
UtopiahThat's what she said.10:06
facefaceheh10:06
facefacebut I see that it would work10:06
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facefaceyou'd just upload a bunch of url's to the wiki, then I'd wget them and send them back, right?10:07
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Utopiahback to http://bifx.org/~dmb/ yes10:08
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Utopiahbtw Im no expert but I doubt Elsevier will enjoy crawling too much so I doubt getting an entire archives of journals (unlike random articles) wouldn't trigger their logs, no idea what problem that could cause though10:11
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facefaceUtopiah: yeah... I'm figuring something will happen...10:16
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facefaceanyone involved in GSoC?10:19
facefaceI've founded GSoD : google summer of dissapointment10:19
faceface'lets do it anyway'10:19
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facefaceUtopiah: thinking about your idea, lets just do it informally10:45
facefaceanyone who is interested, send me a list of url's by email, and I'll grab them and put them up10:46
facefaceif anyone asks, I'll say I was making a private library (which is fine according to someone I spoke to at nature)10:46
facefacethis server has direct access to all the journals that the MPIMG has, so it's way more than just Elservier, Nature, Science etc.10:47
facefaces/MPIMG/MPI/10:48
facefacewhy does squid think I want sweedish error messages?10:50
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facefacehttp://bifx.org/~dmb/ADDR.tar.gz # Advanced Drug Delivery Reviews13:00
facefacehttp://bifx.org/~dmb/THL.tar.gz Tetrahedron Letters13:02
facefaceJMB is 30 G and counting13:06
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facefacehttp://www.yourgeneticgenealogist.com/2011/04/23andme-sale-on-monday.html13:20
facefacetime to sign up my family...13:20
kanzurehi jesperj13:29
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jesperjhello kanzure13:41
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kanzurejesperj: what's up?14:04
kanzurefaceface: THL.tar.gz is 403 forbidden14:05
jesperjkanzure: Not much. You? Just checked out http://gnusha.org/skdb/ and since I am very supportive of the idea of copyleft hardware, and am into FOSS, I thought I'd check out what you guys are talking about here.14:14
kanzure:)14:15
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facefacekanzure: weird14:45
facefacedid you try any of the others I posted?14:45
kanzuresure14:46
kanzurethey all work14:46
kanzureyou just need to chmod a+r it14:46
facefacethey all have the same perms14:47
facefaceit's 3.4G ... I wonder if apache is having a problme14:47
facefacekanzure: you can grab it directly from your bifx account?14:47
facefaceI'll chmod a-r14:47
facefaceactually, its already set that way14:48
kanzureif you chmod a-r how is anyone (including me on bifx) supposed to read it14:48
facefacesorry +r14:48
facefacecan you see /memberroot/dmb/public_html14:48
kanzurei'm not logged in at the moment14:49
facefaceor  /memberroot/dmb/public_html/THL.tar.gz14:49
facefaceok, it must be an apache thing... I can check the log14:49
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kanzurefaceface: it's still 403 forbidden14:51
facefacekanzure: yup, it has the same perms as all the other tar.gzs14:51
facefaceit must be a file size thing14:52
faceface[Sun Apr 10 17:53:28 2011] [error] [client 92.236.231.2] (75)Value too large for defined data type: access to /~dmb/THL.tar.gz failed14:54
kanzurein fact, it's not even listed:14:54
kanzurehttp://bifx.org/~dmb/14:54
faceface^^14:54
facefacedo I need to set +x on the dirs for you to grab it directly?14:55
facefaceyou have root there right?14:55
kanzureyeah i can access it.14:56
kanzurethe connection is really slow btw14:56
facefacenothing I can do about that I'm afraid15:01
facefacenight15:01
kanzurecya15:02
facefacetalk to dbolser, but I'll be out15:02
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jrayhawkkanzure: cysteine has piles of space, yes, but obviously access is sort of restrictive15:12
jrayhawkugh, i should put together the new astroboy so you have more control over that15:13
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kanzurejrayhawk: i assumed you'd say that so cysteine is downloading those files at the moment15:21
kanzureat a crippling speed of 1 lame duck an hour15:21
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jrayhawkanyway, you're welcome to abuse it for whatever16:51
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JayDuggerGood evening, everyone.19:28
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--- Log closed Mon Apr 11 00:00:10 2011

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