2012-08-26.log

--- Log opened Sun Aug 26 00:00:07 2012
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delinquentmeOS00:38
delinquentmeerm00:38
delinquentmeSO!00:38
delinquentmethe code for the orbital shaker works :D00:38
delinquentmeNow I get to do the fun part haha00:39
delinquentmeDESIGN !00:39
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foucistdelinquentme: whatcha working on00:53
delinquentmehttp://pastie.org/459022800:53
delinquentmefoucist, just finished up a part of what I hope will be running this OSH orbital shaker00:54
foucistwhat are you going to shake?00:54
delinquentmejust building it00:57
delinquentmeso I can sell it :D00:57
nmz787http://www.youtube.com/watch?v=7xGAv8taVJw&feature=plcp01:09
nmz787BIG BOY 3W laser burning01:09
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nmz787kanzure: ping02:07
nmz787kanzure: what is the best of these formats to use, a lens company has their datasheets in these versions eDrawing IGES STEP Zemax02:08
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archelsIGES is a pretty universal standard03:11
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loansharkhihi03:47
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loansharkhey!04:05
loansharki have been finding some cool stuff on bioengineering… how about creating a bioengineering study guide?04:05
loansharkif anyone would like to help that would be cool ^.^04:06
archelshttp://diyhpl.us/wiki/04:08
archelsgo for it!04:08
loanshark:D04:08
loansharkhttp://ocw.mit.edu/courses/biological-engineering/04:08
loansharkthat is awesome, it has all the subject titles and stuff and a few lecture notes and videos04:09
loanshark:304:09
Utopiahloanshark: there is no Coursera or EdX equivalent?04:10
loansharko.o04:10
loansharkidk what those are...04:11
* loanshark has a GED xD04:11
EnLilaSkoCoursera is awesome04:11
loansharkhttp://www.khanacademy.org/science/biology04:11
loansharkthe lectures from this site are the best in my book04:11
loansharkvery easy to understand, but then i am a very visual learner04:12
EnLilaSkohttps://www.coursera.org/category/biology04:12
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@kanzurenmz787: take iges and step08:03
loanshark:308:04
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@kanzure30 MB http://partsregistry.org/fasta/parts/All_Parts08:30
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@kanzurewhaat you have to be part of an igem team to be allowed to edit the partsregistry.org wiki08:38
@kanzurestreety: hi, welcome back08:38
streetyhi08:39
streetyit has been a while08:39
@kanzurestreety: what have you been up to?08:41
streetymainly moving and working. Only really come on irc because I updated the server with znc and wanted to make sure everything was working08:44
@kanzureeww terrible php http://cambridgeigem.org/genbank/index.phps08:45
@kanzure//BELOW ARE DEFINED THE CONVERSIONS THAT THIS SCRIPT DOES, THE FIRST IS ANNOTATED08:45
@kanzure"Warning: DOMDocument::load() [domdocument.load]: PCDATA invalid Char value 8 in http://partsregistry.org/cgi/xml/part.cgi?part=%08%08%08%08%08%08%08%08%08%08http://google.com/, line: 6 in /f5/cambridgeigem/public/genbank/index.php on line 11"08:47
streetywhat is it supposed to do?08:48
streetynevermind, found the form08:49
loansharki have the best intro video for DNA09:08
loansharkhttp://www.khanacademy.org/science/biology/v/dna09:08
@kanzurehttp://partsregistry.org/wiki/index.php?title=Special:Userlogin&action=submitlogin&type=signup&returnto=login09:19
@kanzure"To be allowed to create accounts in partsregistry.org you have to log in and have the appropriate permissions."09:19
loansharklol09:20
loansharkhow do you order stuff from the parts registry?09:20
chris_99you can't09:20
loansharkawesome09:20
chris_99unless you're in igem09:20
chris_99afaik09:20
loansharkok09:21
chris_99or you synthesize it yourself somewhere09:21
loanshark:309:21
@kanzureyou beg juul to steal some for you (he works with endy)09:21
loansharkfrom what i understand about PCR's is that they are used to multiply DNA, not synthesize it.09:22
loansharkyou use a "DNA Printer" to synthesize :/09:22
loansharkbut i still know very little ^.^09:22
@kanzurepcr still involves dna synthesis09:22
@kanzureand sometimes even de novo dna synthesis when it breaks09:22
loansharkde Novo? (googles)09:23
@kanzurethere really isn't a thing called "DNA printer". just call it a synthesizer.09:24
loansharkok09:24
loanshark:3 i found one on ebay for $30009:25
@kanzurehttp://diyhpl.us/wiki/dna-synthesis.html09:25
@kanzureit wont work09:25
loansharki think its broken09:25
@kanzurethey go for about $150,000ish09:25
@kanzureand you miiight find one working for $15,00009:25
loansharkfound one for 1500 that works09:25
loanshark$1399.9909:25
loansharkhttp://www.ebay.com/itm/Beckman-Oligo-1000-DNA-Synthesizer-/130698731898?pt=LH_DefaultDomain_0&hash=item1e6e40617a09:25
@kanzure"Sold as shown with power cord. No other cords, cables, manuals, accessories, etc (if applicable) included"09:26
loansharkxD09:26
loansharkit has a guarantee so if it does not work just send it back :309:27
chris_99how much do the chemicals cost though09:27
chris_99and are they easy to get09:27
@kanzuredepends on the system.. some synthesizers have proprietary input cartridges i think09:27
loansharkwhat chemicals do you need>09:27
@kanzurei just linked you to a document explaining that09:28
@kanzureadditionally, i :just: mentioned that it's sometimes proprietary09:29
loansharksorry, missed that wikipedia link09:29
@kanzurewikipedia?09:29
loansharkdiyhpl.us/wiki/dna-synthesis ?09:30
chris_99wiki ;)09:30
@kanzurethat's not wikipedia, that's my site09:30
@kanzurechris_99: http://www.glenresearch.com/catalog/beckman.html09:30
loansharki mean wiki as in it is a wiki?09:31
chris_99interesting thanks09:31
@kanzurechris_99: looks like it's not a proprietary connector thing.. neat09:31
@kanzure"However, Applied Biosystems columns, see Pages 7-8, can be used on Oligo 1000 instruments with the use of an adapter available from Beckman, Part Number 607824."09:32
chris_99ah09:32
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chris_99when i win the lottery i'll buy one of those to play with09:32
loansharki feel like a retard in this channel xD09:32
loansharkin any case i found another synthesizer for $65009:34
loanshark:309:34
chris_99ooh just found a robot arm on fleabay with 0.020mm x,y repeatability09:34
chris_99alas no control panel09:34
@kanzurecontrol panels are for linux haters09:34
@kanzurejust hook it up to emc?09:34
loansharkcan i see a link to that robot arm?09:35
chris_99check out fleabay loanshark there should be a few09:35
chris_99emc kanzure?09:36
loansharkkk09:36
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@kanzurechris_99: #linuxcnc09:36
chris_99ta, another channel for the list09:37
@kanzurehttp://www.cryptoparty.org/wiki/CryptoParty09:46
@kanzure"CryptoParties are meetups to share and learn basic cryptographic tools such as PGP/GPG, Tor, OTR, TrueCrypt, etc."09:46
@kanzureso what happened to just having signing parties09:48
delinquentmewut http://vimeo.com/878011309:51
delinquentmekanzure,09:52
delinquentmeyou really have no issues with googles branded chrome09:52
delinquentmeon ubunter?09:52
@kanzurei don't use ubuntu regularly so i'm not sure why you think i have an opinion on that09:52
@kanzuredid canonical fail to brand their own version of chromium?09:53
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delinquentmeohhhh09:53
delinquentmewhat distro?09:53
@kanzureyou just said ubuntu09:53
delinquentmelol no haha09:54
delinquentmefor youuu homeslice09:54
delinquentmeI thought you were ubuntu09:54
@kanzurei don't use ubuntu regularly09:54
@kanzurei like to use debian09:54
delinquentmeic ic09:55
delinquentmeSuprEgo nano-computer contact lens is the latest breakthrough in A.I. and nano-technology to date: a state of the art nano-camera, an incredibly fast computer chip, and an Organic Light Emitting Diode display are all encapsulated within the ultra-small SuprEgo contact lens. SuprEgo contrinuously records and monitors your life, and, in conjuction to the SuprEgo network, projects through to you the Enhanced HyprReal visual.09:55
delinquentmeI think this is more of a cool art project than anything else but idk09:55
delinquentme*watches*09:55
delinquentmenm09:56
delinquentmedont watch.09:56
@kanzuresounds like bullshit09:56
delinquentmekanzure, you want critique my c++ code?09:58
@kanzurejrayhawk: looks like rssh has a flaw? http://seclists.org/bugtraq/2012/Aug/9509:58
delinquentme( arduino )09:58
jrayhawkiiiinteresting09:59
@kanzuredelinquentme: i could look later09:59
jrayhawkoh, rssh09:59
jrayhawkyeah, that always has flaws09:59
delinquentmehttp://pastie.org/459018509:59
delinquentmekk09:59
jrayhawkas does scponly09:59
delinquentmeits pretty short09:59
@kanzurejrayhawk: what are we using?09:59
jrayhawkrbash09:59
@kanzureoops09:59
@kanzureright then09:59
jrayhawkrssh and scponly are projects from people who don't know that rbash exists10:00
jrayhawkthus there are no competent people working on them10:00
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delinquentmeAWESOMEEEE http://www.spektrumrc.com/Products/Default.aspx?ProdID=SPMAS2000LBB10:33
loansharko.o10:34
@kanzurewhat is it? don't make me click10:34
loansharkits a servooo10:34
loansharkcheap and plastic gears10:34
loansharkbe back later10:35
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bkerokanzure: im in texas!12:15
@kanzurebkero: howdy12:16
@kanzureif you are near houston you should stop by tx/rx or http://arcollab.org/12:17
@kanzureand if you're near austin you should hang out with me and be friendly12:19
bkerokanzure: san antonio12:22
@kanzurebkero: if you need someone, bug namerehwon (michael) 210-650-2634 https://www.facebook.com/michael.long.73712:23
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@kanzurealso you could probably hire him to do things if you're persuasive (he's a programmer-type)12:24
@kanzure(but for some reason doing tech support?)12:24
bkerolol ok12:24
bkeroam interviewing with rackspsce tomorrow afternoon12:24
@kanzureah, yeah, i told him to do rackspace when he asked about jobs recently.. unless he wants to move12:25
@kanzurerackspace has this weird retreat they force you to go to in san antonio12:25
bkerooh?  tell me more12:25
@kanzurewell, i only heard this from someone who's company got acquired by rackspace12:26
@kanzureso there were all these CXO people going through this little 'bootcamp' thing about customer service and stuff12:26
bkeroretreat as in event, or a compound?12:26
@kanzuremaybe both??12:27
bkerookay12:27
@kanzuremy other rackspace person is https://www.facebook.com/kevinlord who seems to be in austin and at a different company now.. hrrm12:28
bkerohrm12:29
bkerokanzure: how far apart are sa and austin?12:31
@kanzure90 minutes12:32
bkeronot bad12:33
@kanzurehow long are you here?12:33
bkerotonight and tomorrow until 5pm12:34
@kanzurei have some things i'm finishing that need to have priority over you, but if i get them done let's hang out?12:35
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@kanzurehi yashgaroth12:42
yashgarothhey12:42
@kanzurenmz787: so i'm not convinced that an inkjet dna synthesizer is a fantastic idea. convince me.12:43
@kanzuredoes sung want to repurpose inkjet cartridges from color printers?12:44
@kanzureor would he be interested in the laser_etcher.git progress?12:44
nmz787kanzure: no, me neither12:44
nmz787i just want to get together12:45
@kanzurehah ok12:45
nmz787i think its a great resource (that posam paper)12:45
bkerokanzure: sure12:45
bkerokanzure: ill buy you dinner12:45
@kanzureis mozilla not treating you well enough?12:46
@kanzurei'm pretty sure rackspace is a labor camp in comparison to mozilla..12:46
nmz787but i think maybe putting a piezo print head (if you can get them clean and commodity priced) up against microfluidics might be OK12:46
@kanzuredoes acetonitrile even keep in those cartridges? does it eat through?12:46
nmz787no idea12:47
nmz787i hope we can tweek a bit, soon, for water based chemistry12:47
@kanzureif sung wants to make a synthesizer, the best bet is to do something that's already been accomplished12:48
nmz787because i know even PDMS doesn't like to play with some chems12:48
@kanzurethe posam arrayer is pretty huge iirc12:48
nmz787well i guess POSAM has been12:48
nmz787looked like the size of a laser cutter12:48
nmz787big epilog12:48
@kanzureoh.12:48
nmz787with a computer stand like the tv stands in high school12:48
nmz787the carys12:48
nmz787carts12:48
@kanzurepage 9.. not bad http://bioinformatics.org/pogo/POSAM_Man_Ch1_Assembly_v1-2_040601.pdf12:49
nmz787but it is not ideal for gene synthesis12:49
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nmz787chandni and I are both tethering on a somewhat weak 3G signal12:50
nmz787:P12:50
@kanzurethere's also a part/price list at the bottom12:50
nmz787its pretty sweet that my cell phone is also my router and AP and WAN12:50
@kanzurethey spent $1k on a pentium 3 with 256 MB RAM?12:50
nmz787and music and video player and PDF reader and GPS and map12:50
nmz787yeah what is this 1999?12:50
@kanzure$1089 optical breadboard12:51
@kanzure$1023 "breadboard stand"12:51
@kanzuredaedal 506 24" motion table $453312:51
nmz787well those things are nice if you dont want to mess with a mech E12:51
nmz787but it came from a big lab, no?12:52
nmz787they should have tons of MECH E and EE at ANY big school12:52
@kanzurea $2196 nema servo? dafuq?12:52
nmz787hmm12:52
@kanzure"servo drive, digital" $253512:52
nmz787what brand model?12:52
@kanzureoh oops, i am looking at 'total cost', not unit cost12:53
@kanzurecompumotor GV servo $845/ea12:53
@kanzureerr, that was the driver.12:54
@kanzuresm23 nema servo $732/ea12:54
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@kanzureso they spent $23,000 on optical board and servos and motion control stuff. that sounds a bit crazy to me.12:54
nmz787http://cmgm.stanford.edu/pbrown/mguide/12:54
nmz787epson printer12:55
nmz787http://cmgm.stanford.edu/pbrown/mguide/partslist.html12:55
@kanzurethat page lists "3-Axis Pick and Place Linear Slides and Motors" $9,91012:56
nmz787$1500 on a dell minitowe12:56
nmz787yeah12:56
nmz787hmm12:56
nmz787i dunno12:56
@kanzureseems pretty crazy to me12:56
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@kanzurethere's no way a 3-axis rig shuold cost $990012:56
@kanzure*should12:56
nmz787unless the motors are really awesome (like those Rochester NY made ones probably are) and the motion control is like a 700MHz DSP microstepping variably up to like 512 microsteps.... its not worth it12:57
nmz787i don't think you should need such fine DSP control either12:57
@kanzureit depends on how many wells you want, no?12:57
@kanzure"custom machined" "slide platter with dowel pins" $120012:58
nmz787wells?12:58
@kanzurefor microarraying?12:58
bkerokanzure: they are, I want to prove that Mozilla is underpaying me by getting some competing offers.12:59
@kanzureah cool13:00
nmz787well i guess we'll see if a $500 gantry is sufficient13:02
nmz787or whatever laser.git is13:02
nmz787hopefully $10k in motion control isn't req13:03
nmz787but we're also not printing spots13:03
@kanzurefenn: you should write us a page that reasonably outlines order-of-magnitude guestimates for different motion control rigs13:03
nmz787eh?13:03
nmz787what's that mean?13:04
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@kanzurenmz787: it just means that these academic projects could prolly be cheaper13:07
@kanzureand somehow they are getting ripped off or something13:07
nmz787kanzure: have you seen these? http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&cad=rja&ved=0CC8QFjAA&url=http%3A%2F%2Fmillenniata.com%2F&ei=84E6UPilCYSZ6AGKsYDoDA&usg=AFQjCNFZbqctcNynbKJyfqZ_7CDbd-jTDA&sig2=G9FMLJfkEgq6YoEIiwIerQ13:07
nmz787bah millenniata.com13:07
nmz787i was thinking there may be a way to separate the disc halves after burning13:08
nmz787then maybe a DVD burner would suffice, with the laser being hi-jacked or something (I wonder if the write laser could be taken control of while the tracking laser (red or IR I think) keeps doing the motion control13:09
nmz787cooling a DVD drive might be a problem if you're overdriving the laser diode though13:10
nmz787some kind of cool gas stream blowing at the diode rapidly might work13:10
nmz787but with cooling you also have to watch out for condensation13:10
@kanzurenmz787: you should get sung in here sometime13:12
nmz787http://search.newport.com/?x2=sku&q2=M-SG-44-213:12
nmz787$200013:12
nmz787flat to <+-101.6 microns over 2 sq feet13:13
nmz787seems pretty nice, if you've got the dough13:13
@kanzurewhat does "flat" mean13:13
nmz787honeycomb core, some damping13:14
nmz787oh wow they even have "Maximum Dynamic Deflection Coefficient"13:14
nmz787and"Deflection Under Load"13:15
nmz787so it seems like for the materials, time to build, and time to test... $2000 seems almost fair13:15
@kanzurefor a breadboard?13:15
nmz787for anything with that much care put into it during construction13:16
nmz787think if that was a guitar or something13:16
@kanzureoh ok. you're not specifically saying you need this breadboard for something.13:16
nmz787I only say that because the neck of the guitar is stressed and is expected to perform (not bend) to a certain degree13:16
nmz787well yeah, I think the smaller aluminum that is on the laser.git BOM is good enough13:17
nmz787it may have some of these same tests13:17
nmz787but that breadboard is 1.2 meters square13:17
nmz787machined with screw holes, 2.5 to 3 inches thick with leg mounts, etc... etc13:18
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nmz787hmm this doesn't actually list any flatness specs http://www.discountsteel.com/items/C250_Aluminum_Cast_Tooling_Plate.cfm?item_id=152&size_no=113:20
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nmz787hmm, from the POSaM paper14:17
nmz787"The Epson14:17
nmz787F057020 six-color print head has six banks of 32 nozzles, or14:17
nmz787192 individually addressable piezoelectric pumps. We purchased14:17
nmz787one complete Photo 700 printer (Epson America,14:17
nmz787Long Beach, CA) to obtain a print-head holder and ribbon14:17
nmz787cable, and subsequent print heads from Agson Electronics14:17
nmz787(Cherry Hill, NJ)."14:17
nmz787so it takes 6 pumps for 1 nozzle?14:17
nmz787ahh, kanzure here's how they replaced acetonitrile14:20
nmz787Acetonitrile, the preferred solvent for automated phosphoramidite synthesis, is not suitable for inkjet printing due to its high volatility; droplets may even evaporate before contact with the slide surface. In addition, phosphoramidite precipitates can accumulate on the print head and clog the nozzles. Propylene carbonate is one less-volatile alternative that has been shown to produce coupling efficiency of 94-98% for inkjet synthesis [3]. After exten14:21
nmz787then also used a laser under the print head as a break-beam sensor to see if a print jet was firing or not14:23
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nmz787kanzure: how do i map who is on my LAN?14:50
nmz787IPs only14:50
nmz787I guess ports would be good too14:50
jrayhawknmap 192.168.0.*14:53
jrayhawk-O is fun, too14:53
jrayhawkavahi-browse -a might be interesting14:53
nmz787what if the IPs are on a different subdomain?14:53
nmz787i.e. my router used to be  10.0.0.1 but DHCP was in 19214:54
jrayhawkping -b 255.255.255.255 might do a thing14:58
jrayhawkbut a lot of software and hardware ignores that kind of chicanery14:58
nmz787i'm trying to look for the modem (my non-techy landlords), to try and do a software reset15:01
jrayhawka less easy but more plausible approach be shoving an interface in to PROMISC and working out what broadcast radiuses should be searched based on what ARP packets come through.15:01
nmz787i know the router IP, but it doesn't list the uplink IP15:01
jrayhawkuplink...?15:01
nmz787generally the modem plugs into the router15:02
nmz787used to be a special port for WAN15:02
nmz787i guess that could be dated/incorrect in this case15:02
jrayhawkYou should probably list whatever embedded boxes are involved and which is connected to what how.15:03
nmz787i have no idea15:04
jrayhawkIf you want to figure out the routing path, including addresses, you should use a traceroute.15:04
nmz787192.168.1.1 directs to ddWRT web gui15:04
nmz787so how do I easily find out what the router IP is, instead of guessing that it was 192.168.1.1?15:05
jrayhawktraceroute15:05
nmz787why isn;t it in ifconfig?15:06
chris_99it's in route nmz78715:06
nmz787doesn't the computer need to know the router IP?15:06
jrayhawkip route15:06
nmz787or is the router transparent?15:06
jrayhawkIf you want to see every address on the routing path, use traceroute. IP packets have a 'time to live' field that routers check positivity for and decrement in order to avoid routing loops causing infinite traffic.15:07
jrayhawka traceroute constructs a series of packets with increasingly larger TTLs so that it can get a list of responses from routers sending back rejections.15:08
jrayhawkYour local system's routing tables most likely only have entries for the local network and the innermost router.15:09
nmz787hm15:09
jrayhawkwhich is what 'ip route' prints.15:10
jrayhawk'router' and 'gateway' are IP-specific terms. Most likely, your modem is also a router in sequence with whatever that other thing you're calling a router is.15:13
jrayhawkIt's conceivable, however, that it is a PPPoE bridge and not actually in the routing path.15:15
jrayhawkin which case you'll have to look on the ddWRT settings as to what address it has.15:15
nmz787i dont think the cable company would release a modem/router with ddWRT15:19
nmz787maybe15:19
nmz787...15:19
jrayhawkOkay, seriously, 'traceroute -n 4.2.2.3' and try whatever address comes after 192.168.1.115:19
nmz787ahh, like another computer on the network?15:20
nmz787doing that wouldn't see the modem, if it has an IP15:20
jrayhawkno, outside the network15:20
nmz787ok15:20
nmz787whats 4.2.2.3?15:21
jrayhawkLevel3 nameservers15:22
nmz787well i dont have internets on that AP15:23
nmz787which is why i want to find the modem :/15:23
jrayhawkhave you run 'traceroute -n 4.2.2.3' yet15:24
nmz787yeah15:24
jrayhawkif not why have you not run 'traceroute -n 4.2.2.3' yet15:24
nmz787doesn't hop anywhere15:24
jrayhawkthat's rather odd15:24
nmz787because the router doesn't have a WAN connection15:24
jrayhawkthe router should still bounce the packet15:25
nmz787to where though, if there is no where to go15:25
jrayhawkback to you. that would be the whole point.15:25
nmz787hmm15:25
nmz787ok brb15:26
jrayhawkthis implies that whatever you're expecting to exist after 192.168.1.1 isn't responding to network activity.15:26
nmz787oh well15:30
nmz787good thing i have a smartphone with OK 3G15:30
jrayhawkoh i guess verizon manages those DNS servers. whatever.15:34
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bkerokanzure: will probably be getting into san antonio around 8 or 9. :(16:53
@kanzurebkero: good, i can't really play before then.16:53
bkerokanzure: haha, alright16:53
bkeroI'm down for anything, I just need to be up around 8am for rackspace interview crapola.16:54
@kanzurebkero: don't count on me until i confirm of course..17:01
bkerokanzure: My routine isn't going to change:  1) Get into San Antonio.  2) Steal underpants.  3) Go to hotel17:01
@kanzurenmz787: so i think you should spam that biohack-nyc thread with "or if you can't wait until then, join irc" http://diyhpl.us/wiki/hplusroadmap/ has instructions17:02
@kanzurebkero: ah my buddy mike can't hang out, apparently he has a job thing that keeps him until 5pm tomorrow.17:02
@kanzurejrayhawk: i want to convert an existing hg repository to git and append each commit message with "hg-commit-id:" strings. i would also really like it if the hg-git bridge thing still works. do you have any hints?17:04
bkero:(17:04
bkerokanzure: job things suck17:04
@kanzurewhere did chido/pasky go?17:05
nmz787is chido == pasky?17:06
nmz787chido hasn't been on for a while17:06
nmz787was she ever on here before coming to SF in June?17:06
@kanzurechido and pasky are separate people17:06
@kanzurepasky has been in here for years17:07
@kanzurechido was not in here prior to SF17:07
* bkero is chilling in PHX right now.17:07
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nmz787"The ASM9600 was designed in collaboration with Ben Potsaid, John Wen, and Yves Bellouard at the17:14
nmz787Center for Automation Technologies and Systems (CATS) at Rensselear Polytechnic Institute (RPI;17:14
nmz787Troy, NY)."17:14
nmz787wonder who they are17:14
@kanzurejrayhawk: oh i see now. hg-to-git/hg-fast-export.py is just a wrapper around git-fast-import so it works like a normal thing.17:15
nmz787this thing is hot http://www.thorlabs.com/images/Catalog/V19_07_Micros_Img.pdf17:15
loansharkOOH17:17
loansharki wonder if you could make one of these :317:18
loansharkas in a microscope out of a digital camera17:18
@kanzureloanshark: http://diybio.org/2009/12/13/webcam-microscope-hacks-at-bosslab/17:19
bkerokanzure: is Mike the dude in SA?17:19
loansharkooh17:19
loanshark:3 thanks17:19
bkeroloanshark: Some third world doctors do for cheap microscopes17:19
@kanzurebkero: michael long17:19
loansharkwas just searching for it on instructables17:19
@kanzureinstructables is bullshit17:19
bkeroheh instructables17:20
bkerokanzure: I see17:20
bkerokanzure: any recommendations for places to go in SA while I'm there?17:20
bkero(this evening)17:20
bkeroI recognize that it's sunday night and that might just usck.17:20
bkero*suck17:20
loanshark:O17:21
loansharki like instructables17:21
loansharktheir microscope is not very good17:22
loanshark:O17:23
loansharkyou can see bubbles clearly :317:23
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@kanzurebkero: no i don't have any suggestions17:37
loansharkbkero: South Africa?17:39
bkeroloanshark: Yes17:43
bkeroI'm in Johannesberg17:43
bkeroand looking for cool doodz17:43
loansharki have a house there!17:43
loansharkwell, my mum does17:43
loansharkohhh17:43
loansharkummm17:43
loansharkhate to break it to you but joburg sucks17:43
loanshark^^17:44
loansharkgo to botswana!17:44
yashgarothdon't worry, he's strapped17:44
loansharklast time i was in joburg i bought a rifle17:44
loansharkthen went hunting on a friend of my parents ranch17:45
loansharkthere were wild horses and birds and stuff… did not seem very african17:46
yashgarothkeeping it zef huh17:46
loansharkno buffalo, no antelope, no elephants or rhinos… they have those confined to parks and hunting ranches17:46
loansharkdid not enjoy my time in south africa17:47
nmz787bkero: PHX isn't phoenix?17:49
bkeronmz787: it is17:55
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* bkero board flight18:09
@kanzuregitified: https://github.com/kanzure/pokered18:09
@kanzure(it was hg originally)18:09
tashoutang@K: I have seen your disscution with somebody about computer science and biology18:17
tashoutangI have a question18:17
nmz787so you're in PHX and SA?18:17
nmz787at the same time?18:17
nmz787hi tashoutang18:18
tashoutangdoes computer science <or other "mathmatical related subjects"> use "deductive method" to study18:18
tashoutanghe18:18
tashoutanghi18:19
@kanzurenmz787: he's flying to san antonio18:19
@kanzurenmz787: and loanshark made up some BS about south africa18:19
tashoutangand does biology use the "inductive method " to study the phenomena?18:19
tashoutangI am studying anatomy now18:20
tashoutangsome of my friends studied reptiles.18:20
nmz787bio maybe also called empirical18:20
tashoutangsome studied evolution <in molecular level >18:21
@kanzuretashoutang: i don't know what you are asking. deducation/induction can both work.18:21
nmz787but in that sense, that was done in math a long time ago18:21
nmz787so maybe its just the level that each study has advanced is differe18:21
nmz787different18:21
tashoutangsomehow I always think that biology is to complicate and the knowlege is too disarray to have a systematic   construct18:23
@kanzureyou can still be systematic about biology.. that's what bioinformatics helps do18:23
tashoutangyeah18:23
tashoutangbut for example18:23
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tashoutanghow did they conclude a type of one species just because the morphology of one creature in the past?18:24
@kanzurethey don't.. they make up taxonomies18:25
tashoutangwill the old taxonomies be re-classified from the modern molecular knowlege?18:26
tashoutangand when I studied anatomy, i feel so boring about remembering so many terms...18:27
tashoutangdoes this have any scientific meaning?18:28
tashoutangjust like signal transdution...18:28
tashoutangtoo many paths and somehow the relationships is very strange and sometimes without any logics18:29
yashgarothyep pretty much18:30
tashoutangafter 10 years of completing the human genome project, can we conclude some rules?18:30
yashgarothnope not really18:30
tashoutangI think maybe we can guess some sequences might be exons, or not?18:31
tashoutangmaybe the rules will be found by bio-informatics18:31
yashgarothyes, but already knew all the exons from cDNA cloning18:31
tashoutangmmmm....18:32
tashoutangto Yashgaroth: do you think human genome project was a necessary project?18:33
yashgarothnothing is necessary, but it was a wise investment, yes18:33
tashoutangOK,18:33
tashoutangyeah, it might be very useful for future protein-like medicine...18:34
tashoutangto develop new drugs....18:34
yashgaroththe technology that was developed in the project opened the path for cheap genome sequencing, which is important18:35
tashoutangmmmm....18:35
tashoutangbut the sequencing equipments are very expensive...18:35
@kanzureonly because everyone keeps thinking that18:36
yashgarothyes, but not everyone needs their genome sequencing machine18:36
yashgaroththeir own*, I should say18:36
tashoutangmmmm... right....18:36
@kanzurethere's no particular reason a good sequencer needs to cost so much18:36
@kanzurethey just do because people keep paying that much18:37
@kanzure(among other reasons and flaws of the biotech market)18:37
tashoutangwill we develop a new and tech to let each lab has its equencing ability in the future, just like PCR machine?18:37
yashgarothwhen enough labs have enough of a need for such a machine18:38
yashgarothand it becomes cheaper and faster than sending it to another company for sequencing18:38
tashoutangyeah,18:38
tashoutangOK, thanks a lot, I think one day we might be able to set up a personal lab in the future, and the budget is under.... hmm.... 10,000 USD..... in the future, I hope so....18:40
@kanzuretashoutang: hey are you able to do translation work? i was wondering what you think abuot translating http://diyhpl.us/wiki/diybio/faq into chinese (i think you speak mandarin?)18:40
@kanzure*about18:40
tashoutangyeah, I speak mandarin....18:41
@kanzurewhat is the current state of mandarin text for diybio/biohacking or basic biology on the web?18:41
@kanzureis there anything?18:41
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tashoutangbut I have been working beneath a desk <with bench> for about 11 years18:42
@kanzurekendoka: hi18:42
kendokahey18:42
tashoutangI can introduce a website,18:42
tashoutangwait18:42
kendokaanybody following LENR?18:43
kendokaRossi et al18:43
tashoutanghttp://dxy.dxy.cn18:43
tashoutangit is said the largest chinese website in mainland China for life science18:44
tashoutangsaid to be18:44
tashoutangwith simplified Chinese words18:44
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@kanzurein the US, science is not so centralized except in academic journals18:45
@kanzure2 million members, 10000 currently online http://www.dxy.cn/bbs/index.html neat..18:45
tashoutangthey offer on-line trading offering18:45
@kanzuretrading what?18:45
@kanzurehahah18:46
@kanzureyashgaroth: http://paper.pubmed.cn/18:46
@kanzureYES18:46
tashoutangevery kind of items about life science18:46
tashoutangclinical or non-clinical18:46
yashgarothit needs a login? I guess18:46
tashoutangdxy need an account18:47
tashoutangyou can find many recruiting messages there too.18:47
yashgarothitems, meaning information or chemicals?18:47
tashoutangboth of them18:48
@kanzuretashoutang: do you know what ezproxy is?18:48
tashoutangeven the new drug registration informations18:48
tashoutang@Kan: software?18:48
@kanzureprogrammers in china steal credentials for ezproxy instances to login and get papers from US schools18:49
tashoutanga kind of VPN?18:49
tashoutangha18:50
@kanzurehttp proxy18:50
tashoutangyeah18:50
@kanzurenot a vpn18:50
tashoutangsome websites(in China) sell passwords and accounts18:51
kendokahttp://www.lenr-canr.org/acrobat/TianJexcessheatb.pdf18:51
@kanzuretashoutang: can you show me?18:51
tashoutangI think some students in the US sell their accounts to the hackers in China.18:51
@kanzurehow much does an account cost?18:51
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tashoutangabout 60~100 USD for several months<4 years ago>18:53
tashoutangtheir major clients are students18:53
kendokahttp://upload.wikimedia.org/wikipedia/commons/9/92/2009DIA-08-0911-003.pdf18:53
nmz787yashgaroth: did you ever get a job?18:53
@kanzurecan you link me to a site that sells these?18:53
kendokahttp://www.grc.nasa.gov/WWW/sensors/PhySen/docs/LENR_at_GRC_2011.pdf18:53
yashgarothnmz787: yeah I start tomorrow18:53
@kanzuretashoutang: what should i search for? in chinese?18:53
tashoutangcan you read Chinese?18:54
@kanzuresort of :)18:54
@kanzurei try18:54
tashoutangu can use keywords like "徵求帳號"<the meaning is "I want some accounts">18:55
nmz787yashgaroth: doing what?18:55
yashgarothGMP protein purification18:55
@kanzuretashoutang: "帐号" ?18:56
@kanzuretashoutang: i think this is similar18:56
yashgarothincludes months of paid GMP training :D18:56
tashoutangusing google you can find this kind of questions, most of them are from the poor students they want to get new papers to finish their thesis18:56
tashoutangyeah18:56
tashoutangwait,18:56
@kanzurei see18:56
tashoutangI would google it first...18:57
@kanzuretashoutang: i want to buy $300 - $500 of accounts18:57
tashoutang"徵求帳號"18:57
@kanzureah18:57
@kanzurei am getting back many results about gaming :(18:58
tashoutangasking of an account of "VPN, ncbi....etc..."18:58
tashoutangyeah18:58
tashoutangVPN?do you try it?18:58
@kanzurelooking18:59
tashoutangat least somebody selled national Taiwan Universty's VPN account now, ...just googled it:)19:00
tashoutangI can tell you, it is obviously some students sell the accounts of NTU...19:00
@kanzurethe only results i see are for gaming :(19:01
@kanzuregoogle.com.hk ?19:01
tashoutangyeah19:01
tashoutang徵求VPN帳號19:01
tashoutanggoogle it19:02
@kanzureaha19:03
@kanzureyes19:03
tashoutang徵求期刊帳號19:03
tashoutang期刊means "journal"19:03
ParahSailin_i know some of those characters19:04
tashoutangOK, I have to study my anatomy now, and I will keep staying on line...19:04
tashoutang:)19:04
@kanzuretashoutang: thank you19:04
tashoutangso you can find many resources19:05
ParahSailin_i prefer to study other people's anatomy over my own19:05
tashoutangpoor students can find the cheap and only way to get papers ,although it is illegal...19:06
tashoutangto Para:19:06
tashoutangof course19:06
tashoutang:)19:06
ParahSailin_thats kinda confusing that you call it NTU, because normally i think the one in sg19:07
@kanzureParahSailin_: find me a chinese bbs selling ezproxy accounts19:08
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ParahSailin_big hand soup probably can help you more with that19:09
tashoutangu can use http://www.baidu.com <Chinese'version of GOOGLE> and the key word "徵求期刊帐号 site:.cn".19:10
@kanzurewhat is "big hand soup"19:10
yashgarothone translation of ta shou tang, I'd wager19:10
ParahSailin_bad play on his name19:11
@kanzureoh i see19:11
kendokait comes with the fried rice19:11
ParahSailin_i know enough chinese to butcher it in ways that amuse me19:11
@kanzurewow the baidu results are much better19:12
tashoutangyou see, I always respect the Chinese, they always copy others' idea quickly...19:14
tashoutangand they always want to build their own system...19:14
tashoutangand it is very strange that they somehow use some "fire wall" to isolate the Baidu from google19:15
tashoutangso u will not find out some results and infromations of Baidu from google.19:16
@kanzureperfect.. http://bbs.proxycn.cn/read.php?tid=29383919:20
@kanzurethe connection seems to be poor to the US..19:20
@kanzurehttp://diyhpl.us/~bryan/irc/%E6%9C%9F%E5%88%8A/blah.html19:20
@kanzure"literature agent area" http://bbs.proxycn.cn/thread.php?fid=45&page=019:20
@kanzureif only it would load :(19:20
@kanzureParahSailin_: do you know a good http proxy i can use that might help my http requests?19:22
ParahSailin_one inside a uni paywall?19:23
@kanzureno19:23
@kanzurejust in general19:23
ParahSailin_what purpose, requirements19:24
@kanzureParahSailin_: when i request bbs.proxycn.cn i think i am being filtered by something, somewhere19:25
@kanzurebecause my connection gets reset each time19:25
ParahSailin_great wall19:26
browniesa BBS? how retro19:27
@kanzurebrownies: BBSes are super popular in china19:27
@kanzurebut they are really just forums19:27
@kanzurei think "discuz!" is the phpbb of china19:28
nmz787kanzure: ask to proxy through tashoutang19:33
yashgarothhe's also outside the firewall19:34
-!- Netsplit *.net <-> *.split quits: foucist, lichen19:34
@kanzure"利用google搜密码 最早以前,我曾经用" password+journal" 方法搜过一些,效果也很明显。"19:34
@kanzure"后来有人提出一个号称通吃天下文献数据库的密码万能的公式, password=welcome+(X) x 可以为任何一个文献数据库的名称,可以写成 password=welcome+ProQuest password=welcome+Ingenta password=welcome+EBSCO。"19:34
nmz787kanzure: http://spys.ru/free-proxy-list/CN/19:35
@kanzure"等等,放到google里后,检索为“password welcome ProQuest” 这样会有好多的密码出现,你慢慢尝试吧!"19:35
@kanzure"cnki/vip/wanfang/renda/ssreader"19:36
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ParahSailin_bbs is easier to sinicize than "forum"19:38
@kanzuremaybe this one.. http://bbs.ok6ok.com/index.php19:59
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@kanzurebaidu snapshot: http://cache.baidu.com/c?m=9d78d513d9d430a84f9d93697d15c0161f43f0672ba3a0027ea4843e90732844501790ac53250705a3d20a6216de3a4b9cf62102311421c78cb9fe5da9b1866f6fd6286e365ac45613a004b29b1664d620e707b0ab44beadf045c2f38dce&p=93759a46d6c62dfe0be2977555579f2e&user=baidu&fm=sc&query=%C5%B5%B1%B4%B6%FB%D1%A7%CA%F5%D7%CA%D4%B4%CD%F8&qid=c8996eac18adb9e7&p1=120:02
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@kanzurei guess i-nobel.com still works20:03
delinquentmehttp://techcrunch.com/2012/08/14/big-money-for-nano-innovations-samsung-leads-20m-round-in-raydiance-for-laser-precision-manufacturing/20:08
delinquentmekanzure, nmz78720:08
delinquentme^^^20:08
delinquentmefenn20:08
@kanzureit's a link to fucking techcrunch, no way i'm clicking that20:08
delinquentme....20:10
delinquentmewat.20:10
delinquentmeyou can see the title20:10
delinquentmewhat kind of silly logic says I dont go to TC20:11
@kanzurethe title sucks and is uninteresting20:11
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nmz787article doesnt say much more than the title20:16
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@kanzurei should get points for predicting things like this20:17
browniesi hereby award you 1 brownie point20:21
* kanzure reads the point20:26
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@kanzure"non-redeemable"20:26
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@kanzurebrownies: your point seems to be non-reedemable..20:27
brownieskanzure: no cash value, but you can redeem a million brownie points for 1 cookie20:27
@kanzurethis is worth less than the equity you gave me, fuck this20:28
browniesi gave you equity? whoa.20:29
@kanzurethe fictional equity20:29
browniesas long as it was also vesting20:30
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nmz787kanzure, how do i commit to SVN20:43
@kanzuresvn commit20:43
jrayhawkfirst you make kanzure port it to git, then you run git commit20:44
@kanzurenot tonight.. i'm busy being busy with things.20:45
@kanzurenmz787: bug jrayhawk to tell you about git-svn20:45
nmz787says the lock is permission denied20:45
@kanzurewelcome to the wonderful world of svn20:46
brownieshahah20:47
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OldCoderloanshark, hello21:57
loansharkhello21:57
OldCoderSo... mold. Good or bad?21:57
Jorahello, whats up?21:57
OldCoderJora, Hello. loanshark is learning about DIY.21:57
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OldCoderkanzure has explained that DIYBIO is not a rapid process.21:58
OldCoderSo, one question is, can a hobbyist and novice do anything with DIYBIO above the mold level?21:58
nmz787uh oh21:58
OldCoder?21:58
JoraCool...Im not exactly familiar with DIYBIO in its entirity, morely a mere spectator?21:59
OldCoderDitto21:59
nmz787geez what did i miss in here21:59
OldCodernmz787, Hi21:59
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OldCoderSeems to me that mold is something a novice could study21:59
JoraI need to get a lot of additional education in order to be able to pursue anything I'm interested in.21:59
OldCoderYep21:59
OldCoderBut it is possible21:59
nmz787basically we're all tired of explainin to noobs recently, and a lot of the online community DIYbio activity has been down this past year, as compared to the past 2-3 years22:00
loansharkJora: have you seen the biology lectures on www.khanacademy.org?22:00
loansharkjora: they are awesome, very good visual system of online teaching22:00
nmz787so not many people around taking the time to explain things, or more importantly, collaborate on making the FAQ better22:00
Joracool loanshart, nice site for other things as well22:01
OldCodernmz787, that makes sense22:01
loansharknmz787: I'm not sure how to log into the website so i can edit the FAQ xD22:01
Jorawell im just a computer information systems student and call center rep during the day, no time to take bio classes none offered here at night22:02
OldCoderI'll do a bit of it if Bryan will explain some of the priorities22:02
OldCoderCall Center rep; that's usually fun22:02
loansharkJora: they are not bio classes22:02
OldCoderJora, you can pick up some things regardless22:02
nmz787loanshark: kanzure or jrayhawk have to give you permission22:02
JoraIt gets boring answering the phone :)22:02
JoraBut i do that kind of work to pay the bills and work on other stuff22:03
OldCoderJora, there's always the human element22:03
OldCoderYes22:03
loansharkjora: people use them as  a study aid. Just try to watch one - http://www.khanacademy.org/science/biology/v/chromosomes--chromatids--chromatin--etc22:03
nmz787there's also coursera and MIT's online stuff22:03
JoraYes, I signed up for cousera22:03
JoraAnd an neuroscience course on another site thats supposed to be free22:03
nmz787i think there's a free online school where you can actually get a degree22:04
nmz787(wish that woulda been around when i was a kid)22:04
Joranever heard of that, but teaching yourself things is never bad22:04
Jora#1 priority is to the school work is paying for though22:04
Jorai lurk in here from time to time22:05
Jorado you guys like to discuss article and science findings as well as the DIY stuff?22:06
@kanzureloanshark: the instructions to log into the FAQ are in the fucking FAQ, shit man22:06
@kanzureblaah22:06
* OldCoder laughs22:06
OldCoderkanzure, hi22:06
loanshark>.<22:06
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OldCoderloanshark, don't take that too seriously22:06
@kanzureno, he should take it completely seriously22:06
OldCoderYes22:06
OldCoderThe instructions22:07
@kanzureit's a true statement: it's in the FAQ and he failed22:07
OldCoderNot the blaah part22:07
OldCoderHe should definitely read the FAQ before editing the FAQ22:07
@kanzurehttp://diyhpl.us/wiki/diybio/faq/#index18h122:07
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gnusha_diyhpluswiki.git: 6575126 increase git documentation in diybio/faq.mdwn22:10
loansharkkanzure: i fail to see where the instructions to log in are22:11
@kanzureloanshark: http://diyhpl.us/wiki/diybio/faq#editing22:11
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loansharkkanzure: still, I don't see where the log in instructions are.22:15
loansharkI made an account yesterday22:15
loansharki just don't know how to log in22:16
@kanzureloanshark: click "edit"22:16
loansharkahh22:17
loanshark:322:17
@kanzurehttps://secure.diyhpl.us/write/diyhpluswiki/ikiwiki.cgi?page=diybio%2Ffaq&do=edit22:17
* loanshark is learning slowly but surely22:18
loansharkor maybe just slowly :P22:19
OldCoderSurely I'm Sure22:20
OldCoderSay, Shirley, I'm Sure22:20
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* bkero crashes22:31
Utopiahhttp://ropensci.org/packages/index.html22:32
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--- Log closed Mon Aug 27 00:00:08 2012

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