2012-12-25.log

--- Log opened Tue Dec 25 00:00:10 2012
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@fennAgutuk, fish/berry with seal oil (alaskan ice cream)01:48
JayDuggerMock that up with coconut oil, canned tuna, and frozen blueberries.01:54
JayDuggerI suspect that would taste better than Agutuk.01:55
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JayDuggerI have all those ingredients in the kitchen.02:02
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@fennwhat the hell are you talking about, seal oil isn't anything like canned tuna02:18
@fennoh, sorry. it doesn't actually have fish in the recipe02:19
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@fennor maybe it does. seems to be similar to pemmican02:24
@fenn"Then after you’re done looking for the bones you add Crisco, whip it up together with your hand or the blender until it’s thick, add sugar and evaporated can milk, whip until the sugar dissolves."02:27
@fennsomehow i doubt that's the traditional recipe02:27
archels*involuntary gag*02:31
@fenni used to make stuff like that when i was a kid, trying to make ice cream (never did figure it out)02:32
archelshttp://www.youtube.com/watch?feature=player_embedded&v=pL6DczbeKpM#!02:42
@fennany links to christmas music should be preceded with a clear warning02:46
archelshey, I could have pasted some sort of gangnam style conflation.02:48
@fennthat's okay, i wouldn't have watched that either02:48
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juri_./win 3503:38
juri_er. ;)03:38
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archelshi yorick03:58
yorickhi04:17
archelswhat's new and happening in the Lower Lands?04:17
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jennieHello dear members, merry  christmas04:58
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archelsMax Payne 3 requires 30 GB of disk space?!05:59
archelsyes, yes it does. crap.06:01
ThomasEgimaybe they just forgot to add that part in the title "Max Disk Usage Payne 3"06:43
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@kanzurehttps://github.com/alevchuk/vim-clutch08:27
@kanzure"VIM Clutch is a hardware pedal for improved text editing speed for users of the magnificent VIM text editor (1, 2)."08:27
@kanzure"When the pedal is pressed down, the pedal types "i" causing VIM to go into Insert Mode. When released, it types <Esc> and you are back in Normal Mode."08:27
@kanzureno vim scripts in the repo though08:34
@kanzureguess there doesn't have to be. but why bother naming it vim-anything.08:35
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@kanzure http://www.minispaceworld.com/ "the spectacular scale model world for space flight and astronomy"10:28
@kanzurescrew disneyland, i wanna go to that10:28
@kanzurehttp://www.miniatur-wunderland.com/10:29
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kirkaHi, kanzure12:26
@kanzurewhat12:26
kirkakanzure, looks like a potential new developer for NE1: http://www.reddit.com/r/nanotech/comments/153l6g/how_close_or_far_away_are_we_from_reaching_eric_k/12:26
kirka>I hope I will be able to contribute to the community.12:27
@kanzurestop reading reddit12:27
@kanzurewhen he says "contribute" he means "to reddit"12:27
@kanzure"This software was supposed to be open source, and free for the public, but I can't find it anywhere (I may just be incompetent)."12:27
@kanzurei doubt this guy would be a developer12:27
@kanzurethe git repo is pasted all over the place on the web.. how could a developer not find it. i'm highy skeptical.12:28
kirkaMaybe12:29
kirkaThat's good arguments12:29
@kanzureit's even posted in the comments12:29
kirkaI posted it12:29
@kanzurei know. that's why i mentioned it.12:30
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@kanzurei think his name is adam hall12:31
@kanzure"##hplusroadmap @ irc.freenode.org" is wrong.. it's irc.freenode.net12:32
joshcryerSmalley was right, that's what happened.12:32
@kanzureno, what happened was that mark decided to stop dumping money into nanorex12:33
kirkaI can understand Mark, he wasn't big millionaire12:33
@kanzureyes he is12:33
@kanzurewtf dude.12:34
kirkaI thought von Ehr was richer12:34
@kanzurei'm pretty sure mark made a few hundred million in the 90s selling an ftp company12:34
kirkaWow12:34
kirkajoshcryer I think "Mark Modzelewski" and "Nanobusiness alliance" happened12:36
@kanzure"Netrex, which reported revenue of $21.8 million for the year ended December 31, 1998, has over 500 customers."12:36
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kirkakanzure Ok12:37
joshcryerIt's like string theory. Why no progress? Because it's a bunk approach. :)12:37
kirkakanzure But it's hard to find anything about him12:38
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@kanzureso it was for 2.45M shares of ISS in august 199812:39
@kanzuresomehow i doubt this is going to add up to a hundred million12:39
@kanzureaha "The pooling-of-interest transaction makes the deal worth $57 million."12:39
kirkaSo you estimate his wealth at ~20M$?12:40
@kanzurewell. i was wrong. anyway, he had enough resources.12:40
kirkaThey are so secretive, these CEOs12:40
kirkabtw DNA ion channel was designed in Autodesk's caDNAno12:41
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kirkaThough they mention it only once12:41
kirkaIn that paper12:41
kirkakanzure Shouldn't GNU and OSS guys be interested in NE1?12:42
kirkaOr they are just afraid of technical things?12:42
kirkahttps://engineering.purdue.edu/~qobi/ this man is a wizard12:44
joshcryerInterest in hacking on GNU or OSS software is directly proportional to the use the hacker gets out of it or the interest in it with the community at large.12:59
joshcryerkirka, yeah that guy made Stalin. Fucking smart dude.13:00
kirkaStalin is a very cool compiler, yes13:00
kirkaHe also made MacPitts silicon compiler13:01
kirkajoshcryer What's your position on MNT?13:02
joshcryerkirka, I think microtechnology and macrotechnology is more useful toward making replicators and the like.13:02
joshcryerkirka, I think MNT has its uses within biology and circuit design. But I think it's very limited.13:03
kirkaDo you have physical analysis supporting this claim?13:04
kirka>This, to me, leads to a simple strategic question: Would it not be better to first produce a working von-Neumann machine on the macro-scale (a clanking replicator), and then (perhaps) think about how it could be reduced to smaller scales? 13:04
kirkareminds me of these comments13:04
joshcryerkirka, I do not have a physical analysis confirming or denying the claim. All I have are words from a nobel prize winner. An argument from authority, I admit, but I don't have any more information than that.13:05
kirkaThat's fair.13:05
kirkaOk13:05
joshcryerkirka, as far as macro->micro->nano, I think that's a great approach.13:05
joshcryerkirka, which is why imo what we need is a way to design factories at the macro scale.13:06
joshcryerAnd, if it can scale down, without hitting the enzyme barrier that Smalley talked about, then we're golden. Note: I do not rule that out, I just haven't hard of it before.13:06
kirkaI mean that's fair to say this from the beginning (so there is no needless dispute)13:06
kirkajoshcryer You know stalin, aren't you into lisp/scheme then?13:09
joshcryerkirka, yeah, I like Scheme.13:11
kirkaThat's cool, I like it too13:11
joshcryerI'm probably the dumbest person here though. qobi / Siskind's name just stood out.13:11
joshcryer(he was responsible for getting Scheme on that Programming Language Shootout page and taught me a lot about how continuation passing style is super efficient)13:12
joshcryer(getting Scheme a high rank on the Programming Language Shootout page, I should say)13:12
kirkaYou knew him in person?13:12
joshcryerNo, no...13:14
kirkaCool anyway13:14
joshcryerAnd it doesn't even look like Stalin features on that site anymore.13:14
kirkaProgramming Language Shootout ?13:14
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joshcryerJust a petty /. era argumentitive tool: http://benchmarksgame.alioth.debian.org/index.php13:15
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kirkaI know it13:16
joshcryerStalin uses continuation passing style to optimize the fuck out of the program and that's how I learned about CPS.13:16
joshcryer(to clarify about being "taught" about CPS)13:17
kirkaI understand CPS, nut don't quite see how it can help in optimizing. I guess I should read more papers about it.13:17
kirka*but13:17
joshcryerIt's basically a goto.13:18
kirkaAha13:18
joshcryerI say basically because it's a bit more complicated than that and I bet if I were in #scheme I'd be getting trashed. :P13:19
kirkaBut why is it more effivient than implicit stack based transfer of control flow (like e.g C does that)13:20
kirkaI understand that formallu continuation is a state of computational process13:20
kirkaAnd calling it means return to that state13:20
kirkaAnd how we can transform every function to take continuation arguemnt explicitly13:20
joshcryerFirst class continuations as I understand it are implicit stack based transfer.13:21
joshcryerThat's where continuation passing style comes in, every procedure (function) passes the parameters.13:21
kirkaBut how does it make optimisations more efficient?13:22
joshcryerI don't really know, to be honest, I was going to BS out an answer, but I just know how you do it, not why architectures tend to find it more efficient.13:24
kirkaOk thanks13:24
joshcryerI found a fascinating article on this let me see if I can find it again.13:25
kirkaOk13:25
kirkaI have to write a compiler at least once in my life anyway :)13:26
kirkaSo that'll be useful information13:26
joshcryerThis isn't it but this is a nice overview of the history which is a neat read if you're bored: ftp://ftp.cs.cmu.edu/user/jcr/histcont.pdf13:27
kirkaOk13:27
joshcryerkirka, here it is, it's a really fun read: http://www.cs.indiana.edu/~jsobel/c455-c511.updated.txt13:29
kirkaAha, reading it13:30
joshcryerkirka, Mark Feeley did a 90 minute Scheme to C compiler thing, too, if you're interested. But I am sure you want to go it without having your hand being held.13:30
kirkaI have read it13:30
kirkaAnd most of SICP13:31
kirkaAnd some other papers13:31
kirkaWriting simple compiler doesn't look difficult to me13:31
joshcryerStill haven't completed SICP. I don't think I'm worthy of this channel until I do. ;)13:31
kirkaFor me it turned out that I knew most of SICP's ideas when I read it13:32
kirkaThere are some cool left inside though13:32
kirka*cool ideas13:32
joshcryerI'll have to start over.13:33
kirkaInetersting13:37
joshcryerI haven't coded much in the past 5 years I've been coming here.13:37
kirkaBrute function calls aren't always necessary13:38
kirkaWhy?13:38
joshcryerBusy with work, and being too tired to do any real brain activity.13:38
* kirka wants himself an interesting work13:39
joshcryerConstruction is about as least interesting as you can get.13:40
kirkaI think being manager or clerk or something is much more boring13:41
kirkaConstruction is a real job after all13:41
@kanzureclerk/manager is a real job too. do you think people imagine it?13:42
kirkaI think that a large percent of management jobs is unnecessary13:42
kirkaIt can be automated with algorithms and expert systems13:43
@kanzurehave you ever done management work?13:43
kirkaI know some guys who do13:43
@kanzuremaybe they are just really bad at it13:43
jrayhawk12:41 < kirka> Well, about MNT:13:44
jrayhawk12:41 < kirka> There should be a forum13:44
jrayhawkkirka: I have a forumish thing up on diyhpl.us now; did you want forum creation powers13:44
jrayhawkhttp://diyhpl.us/sympa/arc/diyhplus-admin13:44
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kirkajrayhawk I don't know13:44
kirkaA mailing list?13:45
kirkakanzure Well, in US economy is different, you are right13:45
@kanzurei said nothing about it being different13:45
jrayhawkA mailing list in the sense that it is able to send people mail, yes13:45
jrayhawkat no point is sending mail actually a requirement13:45
kirkakanzure Here a lot of management jobs are just a way to redistribute oil money13:46
jrayhawkwell, except for account signup, i guess13:46
@kanzure"redistributing money" is still a job. you said it wasn't real.13:46
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joshcryerI would agree that cubical work is less interesting, but it offers the opportunity to slack off more, so you can browse pointless websites all day.13:46
kirkaBy "real" I mean "useful and contributing to economy"13:46
@kanzureyou have a very bizarre definition of real :)13:46
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joshcryerPfft, money isn't real... or it shouldn't be!13:47
jrayhawkproducing value vs optimizing value, presumably13:47
kirkaWe call them "office Plankton"13:47
@kanzurei suspect you've never had a good manager13:47
kirkaI'm a student :)13:47
jrayhawkkanzure: instead of the baloneymonster should i just grab your gnusha logo13:48
kirkabaloneymonster is weird, heh13:48
@kanzurejrayhawk: yes, but for the record it's ybit's gnusha monster13:48
jrayhawkneeds more spinning, but I *guess* it'll do.13:49
@kanzurehttp://gnusha.org/skdb/images/gnusha.svg13:49
@kanzurehttp://gnusha.org/skdb/images/gnusha.png13:49
@kanzure"what does any of this have to do with hashing!!"13:49
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kirkajoshcryer What do you think of automatic construction? I actually know some guys that make R&D on self-driving bulldozers for one large corporation.13:50
joshcryerkirka, I think it's where we're heading.13:52
@kanzurei doubt it13:52
@kanzureprefab would be more likely to become popular first13:52
joshcryerkirka, China has been playing with pre-fabbed stuff and robots can deal with pre-fabbed easier than not.13:52
kirkaIs it slowed down because of low wages? (in Russia most construction workers are immigrants that have 150-250$ per month and are happy with that)13:52
joshcryerkirka, somewhat not related but AU has whole mining operations that are remotely mined, with robots, and only a few on site mechanics who don't do much.13:54
joshcryerkirka, but it seems we have a housing glut where people can afford houses.13:55
kirkaIn the last decade China workers' wages gone up and manufacturing is becoming more automated (and some companies are outsourcing their monufacturing into Thailand etc were wages are still low)13:55
joshcryerSo for it to be developed would require actionable effort as opposed to waiting for the markets to do it, imo.13:55
kirkaCool13:56
kirkaBy "effort" you mean enterprise or government initiative?13:56
joshcryerkirka, I want to make an automated sewing machine that can take designs and spit out a product. :D13:57
joshcryerkirka, effort being enterprise, government, open hardware initiatives, whatever, but not some supply and demand thing. Because, if you look at China, they can't afford to have their labor pool liquidated, so they won't move past prefab for the time being.13:57
kirkaI'm fascinated by automation too13:57
kirkaBut I think that large scale automation golden age was 1980-1990 when there were thoughts to automate mass-production13:58
kirkaFanuc unmanned factory etc13:59
kirkaMaybe I'm wrong14:01
joshcryerNot sure when Fanuc kicked up but their approach is precision control. If you used their method to make, say, t-shirts, every single t-shirt would be identical, down to the thread count.14:03
kirkaPosition based control is old, I agree. Today's most promising systems use force control and complex feedback (e.g. visual)14:04
kirkahttp://www.rethinkrobotics.com/index.php/products/baxter/14:04
kirkaRodney Brooks designed a good machine14:04
joshcryerThese guys too: http://www.willowgarage.com/14:05
kirkaAha14:05
kirkaActuators and precise mechanics make the largest part of cost (and low production numbers)14:07
joshcryerI just finished reading this paper on Device Human Resolution: http://iihm.imag.fr/publs/2011/INTERACT11_berard_threshold.pdf14:15
joshcryerIt sort of confirms basically my thoughts on this subject.14:15
joshcryerYou don't need precise actuators or motors for menial tasks but for refined tasks you might. But humans can't get below .01 mm (without time going up) doing refined tasks (like moving a mouse), but doing free space movement or stylus movement, it's much worse (see page 118 of that paper or 12 in your PDF reader).14:17
joshcryerOne thing I learned while working on a production line is that the production lines are designed with ones specific accuracy in mind.14:18
kirkaI think that in e.g. assembly operations force control greatly helps to guide parts into their designed position (potential well of sort). As in moving screw into a hole - there is no need to know precise position of the hole, you just oush screw and move it in right direction until it snaps14:20
kirka*push14:20
* joshcryer agrees completely14:21
joshcryerYep, snapping stuff into place, and the like.14:21
kirkaThere was some research on assembling compex devices with robotic manipulators14:21
kirkaI think we could design our objects to be easily assembled in that manner by robots14:22
joshcryerMany automated factories exploit that, even.14:22
joshcryerBut they're hand designed by some smart guy who's been doing industrial engineering for ages.14:22
joshcryerAnd who probably does trial and error until the system works flawlessly at a high speed.14:22
kirkaMaybe there should be automated software for designing like that14:22
joshcryerI know that at our packing plant the printing machine could operate at an absurdly high speed.14:22
joshcryerBut if it was miscalibrated just a tiny bit we wound up having to 'toss' whole batches.14:23
joshcryerkirka, that is what I am thinking, but I think it will require a lot of research to figure out how to make said software. ie, you give it a component and it iterates out possible mass production methods.14:24
joshcryer(or at the minimum uses some basic known techniques to get you started)14:24
kirkayes, that could be several man-years of works or more14:24
kirka*work14:24
* joshcryer agrees14:24
kirkaI know some similar software14:25
joshcryerWhat's it called?14:25
kirka>Kristoffer Kvello, House Designer - using Knowledge Based Engineering and Lisp to automatically design buildings 14:25
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joshcryerAhh, nice.14:25
kirkahttp://www.bluethink.com/14:25
kirkaOops14:25
kirkahttp://weitz.de/eclm2008/Selvaag%20Bluethink%20House%20Designer%20-%20ECLM%202008.ppt14:25
kirkahttp://weitz.de/eclm2008/14:26
kirkaThat's probably more simple thing14:26
kirkaBut they place rooms, doors, windows, plumbing using constrant satisfaction14:26
kirkaThey place plumbing and cables for manufacturability14:26
joshcryerWill have to use Google Quick View since I haven't got a .ppt reader installed (recently reinstalled Windows).14:27
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kirkaIf someone solved that problem (or at least made a demo) I think he could be easily hired by Dassault systems or other CAD vendor14:29
eudoxiahey kirka14:30
kirkaHI, eudoxia14:30
eudoxiakanzure, what was the last time you saw cpopell here14:33
jrayhawk--- Day changed Fri Nov 23 201214:39
jrayhawk16:56 -!- cpopell [ad4908a0@gateway/web/freenode/ip.173.73.8.160] has joined ##hplusroadmap14:39
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eudoxiathanks jrayhawk14:39
jrayhawkwhich i guess is an indication that i should throw a search interface at the logs14:40
eudoxiai considered greping my logs my they are horribly outdated; i should write a script to download them every day14:40
jrayhawkneed more efficient distributability.14:43
jrayhawki should merge them into the diyhpl.us wiki, clearly14:43
jrayhawkthat gives me free access to Ikiwiki's Omega interface *and* allows people to just git pull to catch up14:44
jrayhawkit's a flawless plan. right up until we get a loop due to the commit announcement bot.14:45
eudoxiaoh i hadn't thought about that, haha14:46
kirkabtw eudoxia Quantum celullar automata seems a simple and fast molecular logic technology15:00
eudoxiai'm going to need a source15:01
kirkahttp://en.wikipedia.org/wiki/Quantum_dot_cellular_automaton15:02
kirkaIt's simple15:02
kirkaIt's classical actually15:03
kirkaIn logic sense15:03
eudoxiaoh, i get what you mean now, with the classical thing15:04
eudoxiayeah15:04
eudoxiawait a second i'm not so sure15:04
kirkaTransitions? :)15:04
@kanzurewin 515:06
@kanzuredfjklajs;15:06
* kirka sleeps15:16
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@kanzurethe thinkpad's capslock key is on the right side of the key (under your hand). why did anyone think this was a good idea?15:25
@kanzure*capslock key light15:25
joshcryerDisable capslock or make it a shift key.15:30
@kanzureif i create a socket under kvm emulation, is that socket going to be owned by the owner of the kvm emulation instance or is it considered owned by the kernel?15:51
juri_i think it will matter how you create it. i'm thinking by the emulation instance owner...16:12
juri_normally, you don't have facilities to just crete sockets that are visible outside of the instance, except through a networking link.16:12
juri_and then, the concept of ownership reflects where the network link terminates.16:13
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AgeVivohello, I'm new here and I am coming for a personal project, that I think many here may share:16:25
AgeVivoI would like to play with genetic changes at home16:25
AgeVivoMore precisely, I would like to use the now very famous TALE technique on cells16:26
AgeVivoIf I am not the only one interested perhaps we could collectively develop a "TALE@home toolkit"16:27
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AgeVivoSome of you who go to Longecity and other places may know that I do big projects to the end (I'm currently in the distributed rodent lifespan test at home, starting with c60) and here I am really interested. So I'm looking for people here to work with cells at home16:30
AgeVivo:16:30
AgeVivo*** Anyone here working with cells at home?? *** to discuss the project with you16:30
AgeVivo*** Anyone interested in TALEs? In genetic modifications? ***16:31
AgeVivo*** Actually... is there anyone here??*** (perhaps I'm alone and not using the chat correctly...)16:31
yashgarothyeah christmas day isn't exactly a busy one16:32
yashgarothso uh by TALE do you mean TALENs or what16:32
yashgarothoh no I guess TALEs are a thing too16:33
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yashgarothbut yes I sort of do genetic modification stuff, you could say16:36
yashgarothdid you have a particular gene in mind16:36
yashgaroth(please don't say telomerase)16:37
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AgeVivoyes TALEN16:53
yashgarothmmkay16:54
yashgarothwhat types of cells?16:54
AgeVivoMy goal would be establish a system where I can modify some gene I want (foxo3a comes to my mind right now; but it could be anything else) -- even if it takes 6 months then to try to change a gene16:56
AgeVivocells: ideally a type of stem cell because we could move it to next stages (mice), but if too complex in a first step, then a type of cell that we already are able to work with at home16:58
yashgarothso then...are you simply transfecting cells to make them express foxo3a? I don't know what data you hope to get from that16:58
AgeVivoyes16:59
yashgarothgrowing stem cells at home will be difficult, primary cells even more so16:59
AgeVivoyes. I have mice at home and I have had rats. I was thinking of getting bone marrow but that might be too complex / too specific for a toolkit that others may use at home17:00
AgeVivoso you you suggest a cell line?17:01
yashgarothwell sure there's 293 cells, they're the most standard17:01
AgeVivoWhat types of cells to people at home use?17:01
AgeVivo293 cells?17:01
yashgarothnone, because no one does mammalian tissue culture work at home17:01
yashgarothbut 293 would be easiest17:01
yashgarothand then what, you would subject them to a lot of oxidative stress and see if the transgenic ones apoptose more often? surely someone in a regular lab has done this already17:02
AgeVivoyes but if set smthg at home it would be mlany advantages17:03
AgeVivofor example some persons who are not in wet labs may work on it17:03
AgeVivo(and later work in wet labs: it would be a transition)17:03
AgeVivoothers could start their start-up that way17:03
AgeVivoetc.17:03
yashgarothsure, if they have a laminar flow cabinet17:04
AgeVivoBy the way, thank you very much for being here and helping me shape the beginning (!)17:04
yashgarothno worries, thank you for not being insane (so far)17:04
AgeVivoConcerning the best cells to use, I'm not sure what you meant exactly:17:04
AgeVivoI think that the best for the community would be to work on a type of cell that some people work with at home already -- what would it be?: 293?  Are you using some cells at home?: 293?17:05
yashgarothI don't do mammalian cell work at home, just in the lab17:06
yashgarothbut 293 cells are by far the easiest to work with if you don't have a full research lab17:06
AgeVivook... but, at home, do you do cell work?17:06
yashgarothin a month or so the local diybio lab will be opening, so I'll be doing some there17:07
yashgarothnot that I plan to do much work with cells outside of my body17:07
AgeVivonice17:07
AgeVivoI'm close to la paillasse (in France)17:08
AgeVivoI'm close to la paillasse (biohack in France)17:08
yashgarothoh yes I saw their presentation at the conference17:08
AgeVivo(so you were at the conference 2-3 weeks ago; nice)17:08
AgeVivoAre there other people like you here doing cell work?17:09
yashgaroththe one 6 months ago, in san francisco; was there a more recent one?17:09
yashgarothhere? not really, there's only a few biologists, but the biologists that are here have done cell work yes17:09
AgeVivoyes there was the European DYIbio conference in Paris, 2 or 3 weeks ago17:09
yashgarothah, excellent17:10
yashgarothtruthfully, all you need is a laminar flow hood, an 37 degree CO2 incubator, a centrifuge, culture media, a pipette, and a microscope17:11
AgeVivoMyself I have done much work in physiology and lifespan (c elegans, drosophilas, mice and rats, worked on respiration and ageing mostly) but little cell work17:11
AgeVivoOk. How much do you I need to invest to get that set up, if I use the basic equipment needed for that? 5 000$? more? less?17:12
yashgaroththat depends somewhat on how many cells you want to grow, and I don't know how european prices are17:12
AgeVivoIdeally other people wanting to do wet lab at home would all use the same equipmetn17:12
AgeVivo(use/buy)17:13
yashgarothusually people will buy whatever's cheapest and available, assuming it functions17:13
yashgarotha working piece of equipment is interchangeable with any other of its type, theoretically17:13
yashgaroththe laminar flow hood will be your largest expense, though17:14
AgeVivoyes theoretically and yes practically probably too because it is very basic equiment, true17:14
AgeVivofor the laminar flow hood, do I need to connect it to a "tube that goes out on the house"? or are there laminar flow hoods with filters to regularly replace?17:15
yashgarothnope they're self-contained, it's not like a fume hood; but yes you will need to replace the HEPA filters occasionally17:16
AgeVivogreat17:16
yashgarothkeep it in a fairly clean (i.e. non-dusty) room and it's good to go for at least a year per filter17:16
AgeVivoIf I want to buy it at sigma-aldrich for example I guess they will ask me for a lab agreement number I guess... (?)17:17
yashgarothoh no don't buy it new, get one off of ebay or craigslist or something17:17
AgeVivoebay I know. craigslist I had never hear about. I will ask.17:18
AgeVivoebay I know. craigslist I had never hear about. I will see17:18
yashgarothagain I don't know how it is in france/europe, especially with all their weird laws about genetic modification17:18
AgeVivoIn France it is forbidden (ethics law) to do genetic modification17:19
yashgarothheh yeah17:19
AgeVivounless you have a special agreement17:19
yashgarothbut I'm quite sure most places in the US will ship to europe, though for a 1 meter hood the shipping will be quite expensive17:19
AgeVivosince it is forbidden I am doing it at home rather than doing it at La Paillase (official biohack lab)17:20
yashgarothof course17:20
yashgarothbut I'd say, roughly, $5000 for the whole thing is not unreasonable17:20
AgeVivoo17:20
AgeVivook17:20
yashgaroth2500 for the hood, 500 for a centrifuge, 200 microscope, 100 pipette, and the rest on the incubator17:21
AgeVivoone can buy a laminar flow hood for normal cell culture, right? or even simple chemistry, right? So this should be fully authorized17:21
yashgaroththey will not assume you are doing genetic modification, but it doesn't really have a use outside of cell work17:21
yashgarothchemistry would be a fume hood17:22
AgeVivook ok.17:22
AgeVivoWould you advise me to buy all that on ebay/craiglist?17:22
yashgarothtry to price it on normal retail websites first, if it's too expensive go to ebay17:22
AgeVivonormal retail websites first: what names would you have in mind right now?17:23
yashgarothjust google the item and browse for a while, I suppose17:23
yashgarothmicroscopes and pipettes and centrifuges, it doesn't really matter where you buy17:24
yashgarothyour biggest problem will be buying culture media17:24
AgeVivoWhen I was working in wet labs I used to buy most things at sigma-aldrich. does it make sense here for all this?17:24
yashgarothsigma will not sell to private users17:25
AgeVivoyes, that's what I had in mind...17:25
yashgarothmaybe they will sell to la paillasse...maybe17:25
AgeVivocould you give me an exemple of retailer that you think would sell to private users?17:25
@kanzureebay17:26
yashgarothcarolina.com will sell some things, openbiotech.com has 293 cells (but not media for some reason)17:26
AgeVivook17:26
yashgarothfor equipment you don't need to buy from biotech retailers17:26
yashgarothin fact I would recommend against it, since they will charge way too much for equipment17:27
yashgarothagain that's why I say media will be your biggest problem to buy, since no one sells that to private users17:28
yashgarothI suppose you could experiment with extracting your own serum, but that's a whole project by itself17:29
AgeVivoTo recap and because I am not sure of what you mean exactly in the last sentences, for example I should buy a laminar flow hood from ebay, 293 cells from openbiotech.com, bovine featal media from carolina.com,17:29
@kanzureparahsailin has a bovine serum project in the works17:29
yashgarothI don't think anyone sells media, but I may be wrong17:29
@kanzurei think his plan is to do some cell line that generates the serum instead of harvesting from livestock17:30
AgeVivoIn my lab we used to buy media at sigma17:30
yashgarothyes but sigma will not sell to you, and maybe not to la paillasse17:30
@kanzureprobably, you mean.. you should still try sigma anyway.17:31
yashgarothyeah17:31
@kanzureAgeVivo: since you plan to incorporate anyway, you should just incorporate and get the agreement in writing with sigma17:31
AgeVivoTo recap and because I am not sure of what you mean exactly in the last sentences, for example I should buy a laminar flow hood from ebay, 293 cells from openbiotech.com, media (bovine featal?) from carolina.com, centrifuge/microscope/pipette from ?? (ebay?) ?17:31
yashgarothall equipment from ebay17:31
yashgaroth293 cells from openbiotech, and media from ???17:31
AgeVivokanzure you were saying that instead of buying media there is an alternative?17:32
yashgarothit would be an interesting project to adapt a 293 line to adult human serum, that's for sure17:32
@kanzureno it is just parahsailin's project. theoretically you can generate bovine media without the livestock. but it doesn't exist at the moment.17:33
@kanzureyashgaroth: what i need to do is go meet myself a rancher here in texas. damn.17:33
AgeVivoof course my goal is to minimize the number of additional projects along the way in order to finish the project in 2 years rather than 20 years ;-)17:33
yashgarothgo find yourself an abattoir owner17:34
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yashgarothhey now, being able to grow cells off of your own blood would be great for diybio17:35
AgeVivonot sure if you are talking to me17:35
@kanzurehey maybe our friends at the NRA know a good abattoir17:35
yashgarothboth of you, I suppose17:35
AgeVivo"kanzure> i think his plan is to do some cell line that generates the serum instead of harvesting from livestock" what did you mean?17:35
@kanzurewhat do you mean what do i mean17:35
@kanzurebleh17:35
yashgarothmany cell lines, especially primary and/or stem cells, require factors found in fetal bovine serum17:35
AgeVivoappearently you thought I wanted to do smthg that actually does not require to buy media (nor adapt human media)17:36
@kanzureno17:36
AgeVivodid I understand well? if so, what is this smthg?17:36
AgeVivooh ok17:36
yashgarothlet's focus on defined synthetic 293 media for now, since that's what you'll need17:37
AgeVivooh, abatoir for the blood for the media. ok17:37
yashgarothyes17:37
AgeVivoI'm fully ok on using "defined synthetic 293 media for now, since that's what you'll need" : it seems the most direct17:38
@kanzureexcept you don't have it.17:38
yashgarothheh17:38
yashgarothand it will be the most difficult thing for you to get17:38
AgeVivoactually, in the end what I would like it to modify mouse or rat mesenchymal stem cells17:38
yashgarothah, then you will probably need to get into fetal bovine serum17:39
yashgarothoooor fetal mouse serum17:39
@kanzurecongratulations, you get to become a baby killer17:39
* kanzure gives out party hats17:39
yashgarothman I wonder how much serum you can even get from a fetal mouse...like, 1 mL?17:39
AgeVivowith rats, couldn't I have rats from whom I regularly take blood?17:40
@kanzureyashgaroth: obviously this calls for a fetus farm17:40
AgeVivodoes it needs to be fetus?17:40
yashgarothyes, but the point of fetal serum is that it has many growth factors that are less present in adult serum, that promote growth17:40
AgeVivook17:40
yashgarothI don't do any stem cell work myself, since stem cells are a huge hassle to work with, so I can't give you many specifics there17:41
@kanzureparahsailin figures that you can express those proteins and factors through an engineered cell line, but again this doesn't exist yet. but ultimately it would be far less work than killing billions of liters of fetuses.17:41
AgeVivoso I'll ask sigma for serum. I'll tell them the truth: I previously worked at the pasteur institute and at inserm, not anymore but I'd like to develop a system at home such that I could do a start up17:41
AgeVivowe'll see their answer17:42
@kanzureyou should just ask sigma what sort of incorporation paperwork they need to see17:42
yashgaroththey will likely not want the risk17:42
AgeVivo"incorporation paperwork" = ?17:42
AgeVivoadministrative stuff?17:42
@kanzureproof of business17:42
yashgarothkanzure, these poor socialist europeans can't just start businesses17:42
AgeVivook17:42
@kanzureyashgaroth: elaborate?17:43
AgeVivoyahsgarott: yes, absolutely. they kill innovation everyday17:43
yashgarothI imagine it's quite a lot more difficult than here; have to bribe the local commune, wait 10 years, etc17:43
AgeVivothe strange thing is that they wonder why the USA is so innovative and not Europe, and why it's the crisis and what they can do about it.17:44
@kanzurei've been trhough the process a few times.. basically you wipe your ass with some toilet paper and you're incorporated.17:44
@kanzurepretty simple17:44
yashgarothah, but did you try it in le france?17:45
@kanzurenope17:45
yashgarothespecially since they're so paranoid about genetics work17:45
AgeVivoFrance is worse than most European countries. It has the highest number of ethical comitee per lab17:45
AgeVivobut I'll try17:46
yashgarothhaha ethical committees, fucking europe17:46
yashgarothI feel your pain17:46
yashgarothat worst, when we get the lab working here, I can try buying some media powder and sending it to you17:47
AgeVivothe worst I feel, is not that they stop innovation at its root. it is that terminally ill persons are not allowed to try new potential treatments unless they can fit in a specific existing call for trial (but they die before)17:47
yashgarothwell that's true in the states as well, but it is stricter in europe17:48
AgeVivothis is because of ethics. I have a friend who is in several ethical comitees linked with cancer, and they refuse all new therapeutics to terminally ill patients. don't ask me why17:48
AgeVivoany I digress. Thank you very much.17:48
AgeVivoI'll have a look and come back.17:49
AgeVivoAre you here often?17:49
AgeVivomy email is longevity@agevivo.com17:49
yashgarothall the time, and I have a holiday this whole week so I'll just be around17:49
AgeVivowow. great17:50
yashgarothhey I'm just glad to have someone here interested in biology that isn't talking constantly and ignorantly about telomerase17:50
yashgarothgenerally I'll be around here +/- 6 hours from now, most days17:51
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AgeVivogreat. I'll be happy to discuss with you, know what you are doing etc.17:51
yashgarothexcellent17:51
AgeVivoSince you are used to this place: I was wondering if there could be money to help me finance a toolkit for transfection at home, that then other persons could do as well. But I don't know if that's feasible/I'm new here/it's certainly very preliminary.17:52
AgeVivoSo perhaps to see with the organisers, at some time, I don't know.17:52
yashgarothsurely longecity has some rich old people?17:52
jrayhawkkanzure: if you think that's bad, the X1 Carbon doesn't even *have* a capslock light17:52
jrayhawki wonder if that's true for the other 30 generation laptops17:53
AgeVivoyes, true too. I've had 500$ to send C60 in olive oild to pet owners throughout the world.17:53
AgeVivoBy the way, if anyone is willing here to have rodent pets at home throughout their lives and contribute to life extension, write to longevity@agevivo.com17:54
AgeVivoOk, have to go now.17:54
AgeVivoAll the very best. Happy to have found that place! Bye!17:55
yashgarothau revoir and all that17:55
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AgeVivoComing back... (I should sleep but it's too interesting) rather than work on mice I could perhaps work with fat and blood from me18:11
yashgarothsure18:11
AgeVivoThe trouble is that I really don't want to take risks for my health of course18:12
AgeVivoI'd have to extract fat18:12
yashgarothwell blood is easy to extract, fat less so...where's that video of the guy doing diy liposuction18:12
AgeVivoand blood18:12
AgeVivo"guy doing diy liposuction": really?18:12
yashgarothmhm18:13
yashgarothgets a vacuum pump and a needle and just goes at it18:13
AgeVivoI'd like to see it18:13
yashgarothoh and some painkillers I think/hope18:13
yashgarothit's been a few years since I saw it, will take a look around18:14
AgeVivoBecause that's actually the best to me: extract a little human abdominal fat18:15
AgeVivoFrom there I'd need to extract mesenchymal stem cells18:15
yashgaroththere's always subcutaneous fat, that's everywhere and relatively easy to access18:15
AgeVivoI'd guess htat's another story but it's essentially a question of cost and it's directly my allee so... why not18:16
yashgarothyeah the cost will be a lot higher than 293 cells18:17
AgeVivo(in my last sentence I was talking about getting mesenchymal stem cells from fat)18:17
AgeVivoYou know, if I can do that, it would be marvellous to me18:17
yashgarothoh, absolutely18:17
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AgeVivoBy coincidence would you know 1) how to extract abdominal fat at home (I've actually done much surgery in rats, including very complex cardiopulmonary surgery, but when it comes to humans and especially me I feel completely newcomer)18:19
AgeVivo2) what additional equipemetn to buy to filter cells from the fat?18:20
AgeVivo3) How to take blood? (when that's certainly a stupid question; I'l ask a retired surgeon friend who will teach me)18:21
AgeVivo?18:21
yashgarothwell 1) would be a syringe and some good aim, and 2) I'm not sure; fat is all cells but since I assume you mean stem cells, either flow cytometry or maybe fluorescence microscopy, 3) is also a syringe18:21
AgeVivonice. so I have to see the price for flow cytometry, try both the mice axes and "me" axis and come back here when I'm more aware18:23
yashgarothhaha flow cytometry is a quarter million dollars18:24
yashgarothapparently you can do some affinity pulldown, but I've never done that with cells, just proteins & dna18:24
AgeVivoThank you for the interesting discussion. If you think I can help in exchange in some way don't hesitate to ask18:24
jrayhawkman, 'rat surgeon' sounds awesomely mad sciency18:24
yashgarothlike I say, I'm just happy to talk biology18:24
@kanzureyou could do a microfluidic flow cytometer, but it's an entire separate project. but it wouldn't cost $250k in parts.18:24
AgeVivohaha oh hahaha. Have to go. Bye!18:25
AgeVivo"'rat surgeon' sounds awesomely mad sciency" Yes in the past I was doing what I used to call "bionic rats". I'll described another time (not as great as it sounds)18:26
jrayhawknow i feel inadequate18:29
@kanzureit's okay jrayhawk, you can make up for it with rat fetus surgery18:29
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brownies...did he seriously come in here asking for advice on DIY cosmetic surgery?18:31
yashgarothnah, investigating transgenic overexpression of a tumor suppressor gene18:32
yashgaroththat video of the guy doing diy lipo was totally fucked up, like 15 minutes of him muddling around in his abdomen with a huge needle and then almost passing out after18:32
yashgarothI think it got taken down, or at least that's a safe assumption18:33
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jrayhawkwas it one of the BME/Extreme guys18:33
yashgarothdon't think so, at least I didn't see any body mod stuff on him...then again the video was quite low quality back then18:33
@kanzureyeah, you might as well find the link now18:34
yashgarothit was literally like 6-8 years ago I think18:34
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yashgarothkind of thing that sticks with you, though18:34
@kanzurei bet SA remembers18:34
yashgarothprobably where it got linked from, yeah18:35
jrayhawkit's sad that stileproject died18:35
yashgarothholy shit I've been regged on SA for 9 years18:35
jrayhawknewb18:35
@kanzureregistered for 0 years, 0 months, 0 days. i'm going for a record.18:35
yashgarothhey that was the soonest I could get a credit card18:35
jrayhawkThey weren't charging for accounts for the first few years18:35
yashgarothI think I missed it and then finally signed up when the bittorrent barnyard was alive18:36
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yashgarothah well, anyway this french guy seems fairly legit18:38
@kanzurelongecity has a handful of community projects that try their hardest to do something meaningful18:38
@kanzurei think c60/pets is one of them18:39
@kanzurehttp://www.longecity.org/forum/forum/295-projects-teams/18:40
yashgarothman good luck shooting olive oil into your dog's peritoneal18:40
@kanzurethey also have some weird project contributions/points system18:41
joshcryer-NickServ- Registered : Oct 13 07:26:19 2004 (8 years, 10 weeks, 5 days, 19:22:01 ago)18:48
joshcryerI got kanzure beat by two weeks! Woot.18:49
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joshcryerI think longecity has way too much shit going on and it's all spread out.18:54
joshcryerAt least LW tries to stay focused.18:55
@kanzureon ponies?18:57
yashgarothon ayn rand's figurative dick18:57
@kanzureplos.org hacked (probably xss or wordpress)19:03
@kanzurehttp://www.plos.org/wp-content/themes/plos/README19:03
@kanzurehttp://www.plos.org/media/downloads/19:04
@kanzuredayum. http://www.plos.org/wp-includes/19:05
yashgarothI'll take your word on that19:05
@kanzurehttp://www.plos.org/license.txt19:06
yashgarothidgi are these files not supposed to be public or something19:07
@kanzureyes19:09
yashgarothah19:10
@kanzurei'm curious where the xss exploit is though19:10
@kanzuregoogle is blocking the site in chrome19:10
@kanzurehttp://safebrowsing.clients.google.com/safebrowsing/diagnostic?site=http%3A%2F%2Fwww.plosone.org%2F&client=googlechrome&hl=en-US19:10
yashgarothaw dang it I went and visited the main page19:11
yashgarothit's probably fine, right? I mean it's not liBUY CHEAP V1@GR@ ONLINE19:11
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joshcryerYou've been infected yashgaroth.19:20
yashgarothhello friend i have a very intriguing business opportunity for you19:20
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wrldpcayn rand got a big ol' ass/ayn rand got a big ol' ass/ayn rand got a big ol' rand got a big ol' rand got a big ol' ass20:14
wrldpcI should record a lascivious ayn rand track for the lulz.20:14
joshcryerJust when I think LW is OK but a bunch of elitist smart underachievers ya'll drop the Ayn Rand thing on me. I read "In Defense of Ayn Rand" and almost threw up a little. At least I could agree with Eliezer on "The Guardians of Ayn Rand." Except I disagree that Newton's religious views were the most terrible (logical conclusion from "allowing women to vote"), it was his attacks on20:24
joshcryercounterfiters that was most appalling.20:24
joshcryerNote: I do think women should be able to vote, but Newton's religious views didn't change the landscape, his actual actions as far as catching counterfieters did.20:25
joshcryerAs far as "In Defense of Ayn Rand"'s "rational ostracization," I would only conclude that those who behave this way will be rendered low information states since their processes are incompatible with a larger data web, even in a T3 civilization (barring FTL).20:29
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@kanzuredoes everyone run everything through valgrind these days?23:32
abetuskunder linux, written in c, that's what I do23:33
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--- Log closed Wed Dec 26 00:00:11 2012

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