--- Log opened Wed Mar 06 00:00:19 2013 | ||
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nmz787 | chesapeake bio looks like vapor at least on their website | 01:57 |
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archels | Hmmm... so taking calcium supplements is generally bad for you. Tap water contains quite a bit of calcium. Should one thus not drink too much tap water? | 04:33 |
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delinquentme | zomg HIO | 08:09 |
delinquentme | kanzure, you know about tons of these technologies | 08:09 |
delinquentme | like whats new in the shit | 08:09 |
delinquentme | pink is advocating to get a grand overview ... and then pipeline processes which create value | 08:09 |
delinquentme | but youuuu should have the overview no? | 08:09 |
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nmz787 | paperbot: http://onlinelibrary.wiley.com/doi/10.1002/jps.2600670519/pdf | 09:56 |
paperbot | no translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/180b7d891488ac700cc1eaa612403ecc.txt | 09:56 |
nmz787 | paperbot: http://onlinelibrary.wiley.com.journals.conserveonline.org:2048/doi/10.1002/jps.2600670519/pdf | 10:01 |
paperbot | no translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/8fe835de5c5f862b01b0d0b3bab503c6.txt | 10:01 |
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ParahSailin | you should ban delinguentme | 11:10 |
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nmz787 | what the hell is pink anyway | 12:26 |
nmz787 | the Victorias Secret campaign | 12:27 |
nmz787 | the music artist | 12:27 |
nmz787 | the color | 12:27 |
nmz787 | vagina | 12:27 |
nmz787 | pork | 12:27 |
@kanzure | ParahSailin: that very question has plagued me for years. | 12:28 |
ParahSailin | well you have confirmation that others have the opinion that he adds nothing here | 12:32 |
chris_99 | http://www.theatlanticcities.com/arts-and-lifestyle/2013/03/farming-technique-will-revolutionize-way-we-eat/4880/ hadn't heard of that before 'aquaponics' | 12:39 |
@kanzure | ParahSailin: he occassionally builds a thing that doesn't entirely suck. | 12:40 |
ParahSailin | ah, i didnt realize he did anything | 12:42 |
@kanzure | i told him to gtfo until he had a prototype and then he came back with a prototype | 12:42 |
@kanzure | so i got nothing on him now :( | 12:42 |
ParahSailin | prototype of what | 12:42 |
@kanzure | orbital shaker | 12:42 |
ParahSailin | oh so hes not a total loser | 12:42 |
@kanzure | liquid handling machine | 12:42 |
@kanzure | you can see my dilemma. | 12:43 |
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@kanzure | eleitl is trying to do diy production of microelectrode arrays | 13:53 |
archels | that's silly, you can get pretty decent ones for a few hundred bucks | 13:54 |
archels | tell him to use a CMOS sensor instead :) | 13:54 |
@kanzure | is a utah array that cheap? | 13:54 |
archels | no, flat arrays are | 13:55 |
@kanzure | can you link me to one? | 13:55 |
chris_99 | what's he planning on using them for? | 13:55 |
@kanzure | same thing as everyone else.. neural recording and stimulation. | 13:55 |
ThomasEgi | the utah array sels for roughly 4k | 13:56 |
@kanzure | ah i never knew how much, geeze. | 13:56 |
@kanzure | is it hard to manufacture? | 13:56 |
ThomasEgi | if you have the right tools, it's not that hard | 13:57 |
@kanzure | i'm p. sure most research about microelectrode arrays is using the utah array itself | 13:57 |
chris_99 | some are implantable though aren't they | 13:57 |
chris_99 | some aren't | 13:57 |
@kanzure | archels: you can tell him to use cmos sensors yourself, https://groups.google.com/forum/?fromgroups#!topic/diybio/h82UDs7fw14 | 13:58 |
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@kanzure | phillyj: hello | 14:28 |
@kanzure | phillyj: welcome back | 14:28 |
phillyj | kanzure: hey bryan | 14:28 |
@kanzure | how goes the job? | 14:29 |
phillyj | kanzure: u remind me once in a while and i come back to check things out on here | 14:29 |
phillyj | its good | 14:29 |
phillyj | workin on new contracts | 14:29 |
@kanzure | one of the new features is paperbot | 14:29 |
phillyj | learning new stuff | 14:29 |
phillyj | ic | 14:29 |
phillyj | journal articles? | 14:30 |
@kanzure | paperbot: http://www.sciencedirect.com/science/article/pii/0006291X89924005 | 14:30 |
paperbot | no translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/Electro-insertion%20of%20xeno-glycophorin%20into%20the%20red%20blood%20cell%20membrane.txt | 14:30 |
phillyj | sweet | 14:30 |
@kanzure | that's a bad example i guess, since the pdf wasn't fetched that time. | 14:30 |
@kanzure | paperbot: http://rspb.royalsocietypublishing.org/content/early/2010/03/04/rspb.2010.0001.short | 14:30 |
paperbot | no translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/e09e043e8f91a13687790044a07f10a4.txt | 14:30 |
@kanzure | wow that one was working a few days ago | 14:30 |
@kanzure | paperbot: http://www.nature.com/nprot/journal/v7/n12/abs/nprot.2012.140.html | 14:31 |
paperbot | http://diyhpl.us/~bryan/papers2/paperbot/Monitoring%20local%20synaptic%20activity%20with%20astrocytic%20patch%20pipettes.pdf | 14:31 |
@kanzure | there we go :) | 14:31 |
phillyj | how does this work? | 14:31 |
phillyj | how did u pull up that paper? | 14:32 |
@kanzure | paperbot's source code is here https://github.com/kanzure/paperbot | 14:32 |
@kanzure | paperbot is just an elaborate interface to zotero translation-server, which uses zotero without a browser. zotero has 100s of scrapers for academic journals. | 14:32 |
phillyj | kanzure: if i type a link, paperbot activates? | 14:35 |
phillyj | http://microfluidics.utoronto.ca/papers/DMF%20by%20Marker%20Masking.pdf | 14:35 |
phillyj | paperbot: http://microfluidics.utoronto.ca/papers/DMF%20by%20Marker%20Masking.pdf | 14:36 |
paperbot | no translator available, raw dump: http://diyhpl.us/~bryan/papers2/paperbot/b594add7ad6f4c3c819df96e9ade9e3d.pdf | 14:36 |
phillyj | ic now, that's cool | 14:36 |
jrayhawk | http://www.ted.com/talks/allan_savory_how_to_green_the_world_s_deserts_and_reverse_climate_change.html on the subject of revolutionary agriculture | 14:57 |
jrayhawk | archels: Calcium is dangerous in the context of micronutrient imbalances. Excess vitamin A causes bone demineralization, excess vitamin D causes soft tissue calcification, and vitamin K2 deficiency causes both. | 15:00 |
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jrayhawk | Calcium supplementation is almost always ineptly throwing more calcium at a calcium management problem. Genuine deficiencies are very rare. | 15:04 |
jrayhawk | s/[Ee]xcess vitamin ([AD])/Vitamin \1 dominance/ | 15:11 |
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@fenn | archels: more important is the ratio of calcium to magnesium (we dont get enough magnesium); i figure if you get enough magnesium from supplements or super special water you won't need to worry about calcium in the water | 15:38 |
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@fenn | of course what jrayhawk said is correct too. nobody said it was simple | 15:42 |
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@kanzure | hmm https://www.circuitlab.com/blog/2013/03/06/circuitlab-integration-on-electronics-stack-exchange/ | 15:44 |
@kanzure | http://electronics.stackexchange.com/?from=CircuitLab | 15:44 |
@kanzure | "We are excited to announce that CircuitLab is now integrated with the Electrical Engineering Stack Exchange site! Users can now insert a CircuitLab schematic directly into their question or answer." | 15:44 |
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@fenn | what is circuitlab | 15:45 |
@kanzure | it's like upverter | 15:45 |
@fenn | great | 15:45 |
@kanzure | html/javascript schematic editor | 15:45 |
@fenn | does it export its fucking data format | 15:45 |
@kanzure | haven't checked. upverter does (a bit? all the way? something like that). | 15:46 |
@kanzure | http://blog.upverter.com/import-and-export-upverter-open-json-file-for | 15:46 |
@fenn | no, circuitlab not upverter | 15:46 |
@fenn | "The only thing you can't do is render the schematics of your circuit (i.e Export to PDF, SVG, etc..." | 15:46 |
@fenn | Can I export my CircuitLab schematics out to another tool? | 15:47 |
@fenn | Not at this time. | 15:47 |
@kanzure | ouch | 15:47 |
@fenn | fuck that | 15:47 |
@kanzure | well, i can write some javascript to steal the data from their editor if someone finds a circuit they want. | 15:47 |
@fenn | i'm surprised i can't think of any general purpose netlist format | 15:47 |
@fenn | there's spice but it doesn't handle integrated circuits | 15:48 |
@kanzure | yeah i thought it was weird that upverter chose json until i tried to think of something else they could use, and thought of nothing.. | 15:48 |
@fenn | well json seems reasonable | 15:48 |
@kanzure | yes but they had to come up with it | 15:48 |
@fenn | anyway i see this as sort of like "stackexchange users can now insert java applets into their code! yay!~" | 15:49 |
@fenn | except java is at least a standard | 15:50 |
@kanzure | html is also a standard :p | 15:50 |
@fenn | protons and electrons vibrating in space | 15:50 |
@fenn | everything's physics! | 15:51 |
@kanzure | rcs.org has a few java applets that (apparently) many professors and schools use for doing their chemistry lab work | 15:52 |
@kanzure | and when windows/osx rolled out their recent "disable jvm because of a critical vulnerability" a few weeks ago, that all stopped working | 15:52 |
@kanzure | so there was a lot of hurried emails i saw complaining about this | 15:53 |
@kanzure | pretty strange to see so many people using java applets | 15:53 |
@fenn | wow big surprise here: "At this time, CircuitLab is entirely free-of-charge. | 15:53 |
@fenn | In the future, as the tool continues to grow and evolve, we may decide to charge | 15:53 |
@fenn | java applets were a big deal in 2000 | 15:54 |
@fenn | for a long time it was the only way to do anything that required fast computation in the browser | 15:54 |
@fenn | recently javascript interpreters have sped up a lot | 15:54 |
@fenn | javascript is still slower though | 15:55 |
@fenn | i havent been able to get java plugins to work for years though | 15:56 |
@kanzure | i usually download the jar and run it with webstart from the shell | 15:56 |
@fenn | hm. i only ever wanted to use the falstad.com math and physics demos, and occasionally some crusty government GIS tools | 15:58 |
@kanzure | i used an ssh applet so that i can do real work while at school | 15:58 |
@fenn | oh but now we have "apps" for that :\ | 15:58 |
@fenn | what is an "app" anyway | 15:59 |
@kanzure | well it was windows, so it had a lot of lockdown, and i couldn't install putty. | 15:59 |
@fenn | "packaged apps are written in HTML5, JavaScript, and CSS. But packaged apps look and behave like native apps, and they have native-like capabilities that are much more powerful than those available to web apps." | 15:59 |
@fenn | i just mean this chrome extension thing, which seems totally bizarre to me | 16:00 |
@kanzure | do firefox extensions seem strange? | 16:00 |
@fenn | like, the browser can't handle ssh:// protocol urls, but there's this thing you can install that isn't a document and isn't a program | 16:00 |
@fenn | blegh | 16:00 |
@fenn | no wonder kids dont know how computers work | 16:01 |
@fenn | firefox extensions just modify how the browser goes about displaying a page | 16:02 |
@fenn | chrome apps are like webpages, but they're not on the web, or something | 16:02 |
@kanzure | firefox extensions do much more than that | 16:02 |
@kanzure | it's more similar than you might think | 16:02 |
@kanzure | because firefox's entire infrastructure is all javascript | 16:02 |
@fenn | it is? | 16:02 |
@kanzure | there are some parts that are not (like gecko) but everything else.. basically yes. | 16:03 |
@fenn | they've invented so many layers and api's and copies of everything that i just assumed it was all in C++ | 16:03 |
@fenn | like XUL, what the hell is that | 16:03 |
@kanzure | http://web.uvic.ca/~hitchner/assign1.pdf | 16:05 |
@kanzure | firefox architecture explanation doc | 16:05 |
@kanzure | hm that doesn't explain the thing i wanted to point out | 16:05 |
@kanzure | zotero translation-server is an okay example. zotero was originally a firefox extension. but now they don't require firefox and just requier some of the other parts like gecko sdk and xulrunner. | 16:06 |
@kanzure | https://github.com/zotero/translation-server/blob/master/src/zotero.js | 16:07 |
@kanzure | https://github.com/zotero/zotero/tree/master/chrome/content/zotero | 16:07 |
* fenn grumbles about boxes with dotted lines around them | 16:11 | |
@fenn | i'm just worried that all the development is going to go into browser specific add-ons, and doing anything separately will become more and more of a chore because the tools weren't designed to be used by people in the first place | 16:12 |
@fenn | i shouldnt have to launch chrome to use the ssh protocol, but apparently you have to launch chrome to view a circuitlab document | 16:13 |
@fenn | then in ten years nobody will know where to find the program to view this document, because it was never a "real" program in the first place | 16:15 |
@fenn | you'd have to run a ten year old copy of chrome, and so on | 16:15 |
@kanzure | preaching to the choir | 16:16 |
@kanzure | that's why i offered to write some javascript to extract a circuit if you find one you like/want to keep. | 16:16 |
* fenn grumbles about DMCA circumvention clause | 16:17 | |
@fenn | i dont know if it's even worth it | 16:17 |
@kanzure | i never found anything particularly impressive on upverter | 16:18 |
@kanzure | i hear they have an arduino shield template.. but meh? | 16:18 |
@fenn | you'd just be propping up yet another web based circuit editor | 16:18 |
@kanzure | i am troubled about the lack of culture around "maintaining" circuits on upverter (or anywhere else) | 16:19 |
@fenn | well one of their two "featured" circuits is just a copy of a reference open source circuit taken from elsewhere on the web | 16:20 |
@fenn | the other one is trivial, in the math sense | 16:20 |
@kanzure | i guess once you make a voltage divider you don't really have to worry about it in the future, not much "maintaining" to do..? | 16:21 |
@fenn | a voltage divider is like the bitshift operator in C, it's not something one needs to distribute in the first place | 16:22 |
@fenn | i mean it's just a basic element of any design | 16:22 |
jrayhawk | http://www.youtube.com/watch?v=Vb1pdvvoVoQ inflatable concrete rapid construction | 16:23 |
@fenn | odd how that downloads faster at high resolution | 16:24 |
jrayhawk | youtube does QoS based on video bitrate | 16:24 |
jrayhawk | Or some related heuristic. | 16:25 |
@fenn | i think it's related to how many people in your CDN node's area have downloaded it recently | 16:26 |
@fenn | at that particular resolution | 16:26 |
jrayhawk | Nah, pretty reliably spikes at the beginning and settles down to 1.5-2x bitrate within five seconds. | 16:27 |
jrayhawk | On some videos I get pissed off and just reinitiate connections until I get what I want. | 16:27 |
@fenn | heh | 16:28 |
jrayhawk | I'm a little surprised the quvi community hasn't automated that yet. | 16:28 |
@fenn | on some videos i just drag the slider around and watch the preview thumbnails | 16:28 |
@fenn | 90% o the time it conveys the message | 16:28 |
@fenn | look a talking head with poor lighting | 16:29 |
jrayhawk | TED! | 16:29 |
@fenn | at least they have slides usually | 16:29 |
@fenn | i'm talking about "my raw food diet update #22" | 16:30 |
@fenn | just give me the transcript please | 16:30 |
@kanzure | for some reason not many people believe in transcripts these days | 16:31 |
@fenn | i wish youtube's automatic captions were more accurate | 16:31 |
@kanzure | it's not exactly a huge investment | 16:31 |
@fenn | they can afford to do all this transcoding for free, why not decent speech recognition | 16:31 |
jrayhawk | crowdsource everything | 16:31 |
@kanzure | but the crowd invariably does not type it up | 16:32 |
@kanzure | it ends up being me | 16:32 |
@kanzure | a crowd of one | 16:32 |
@fenn | use humans to do the computer's job!~ | 16:32 |
@fenn | seriously when did this start sounding like a good idea | 16:32 |
klafka | mturk | 16:32 |
@fenn | it was a bad idea then too | 16:32 |
@kanzure | mturk costs money to do transcripts | 16:32 |
@kanzure | when you post a video, it should just be good citizenship to write up a quick transcript. | 16:33 |
@fenn | i think nobody knows how to do it because it's not part of the basic video upload interface | 16:33 |
jrayhawk | now i am sad that i am not watching "my raw food diet update #22" | 16:33 |
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@fenn | jrayhawk: i was thinking of this video http://www.rawradianthealth.com/blog/2011/01/15/part-1-my-vitamin-b12-deficiency-change-of-diet-ep321/ (hint: you can figure it out from the URL) | 16:41 |
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jrayhawk | haha, good lord | 16:45 |
jrayhawk | that warms the cockles of my grain-hating bacon-loving heart | 16:51 |
jrayhawk | haha the difference in eye bagginess from that and http://www.rawradianthealth.com/blog/2011/11/16/test-results-update-on-my-vitamin-b12-deficiency-ep342/ | 16:54 |
jrayhawk | boom, thyroid works again | 16:54 |
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nmz787 | i see bags under her eyes in both vids | 18:06 |
nmz787 | i guess they're less blue | 18:07 |
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@kanzure | what's a sane way to return variables from a bash function? | 18:17 |
@kanzure | please assume i want to keep stdout | 18:17 |
@kanzure | i mean, that i am flooding stdout with crap. | 18:17 |
@kanzure | i see some guides that are suggesting to use eval(??) to set a global variable based on a name passed to the function, instead of just setting a global variable. | 18:18 |
@fenn | how many variables are you returning? | 18:24 |
@fenn | i'd just pass in empty variables to be filled | 18:25 |
@fenn | this could be an array, if you want to go there | 18:27 |
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@kanzure | wtf, why doesn't this work? curl --request PUT --data "hello=world" -F myfile=@test.txt http://httpbin.org/put | 18:31 |
@kanzure | i am pretty sure you can send data inside a PUT request.. | 18:32 |
@fenn | because you're sending two types of data? --data and -F | 18:33 |
@kanzure | this works: r = requests.put("http://httpbin.org/put", data={"hello": "world"}, files={"stuff": open("/tmp/testing.txt", "r")}) | 18:34 |
@kanzure | when i set --data "hello=world" --data myfile=@test.txt, it sends "myfile=@test.txt" instead of a file called myfile. | 18:34 |
@fenn | of course | 18:35 |
@kanzure | "A normal PUT with curl is made with -T without the use of -X or -d." what.. | 18:36 |
@kanzure | i think this is saying that it is impossible to use command-line curl to PUT a file with other data in the same request | 18:37 |
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@fenn | -T seems to be different from -F | 18:39 |
@kanzure | when i use --data with -T it seems to overwrite the other data with the file contents | 18:39 |
@kanzure | also you can't set the filename when using -T (you must do -T file.txt not -T name=@file.txt) | 18:39 |
@fenn | perhaps requests and curl have different capabilities | 18:40 |
@kanzure | they definitely do | 18:40 |
@kanzure | requests uses urllib3 | 18:41 |
@kanzure | there's human_curl which has the same api as requests but uses curl under the hood | 18:41 |
@fenn | maybe nobody ever thought you'd want to send form data and multipart form data in the same request | 18:41 |
@kanzure | ... really? | 18:41 |
@kanzure | i'm pretty sure i do that all the time on forms | 18:41 |
@kanzure | "upload a file, also type some things to describe this file". happens everywhere on the web. | 18:41 |
@fenn | this seems to support my theory http://stackoverflow.com/questions/12667797/using-curl-to-upload-post-data-with-files | 18:44 |
@fenn | basically they say to use a bunch of -F parameters | 18:45 |
@fenn | curl --request PUT -F "myfile=@test.txt" -F "hello=world" http://httpbin.org/put | 18:45 |
@kanzure | okay much better: curl --request PUT -F "hello=world" -F "stuff=@test.txt" http://httpbin.org/put | 18:46 |
@kanzure | yes | 18:46 |
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nmz787 | kanzure: uploading via android <=2.3 doesn't allow you to select multiple files from the image gallery | 20:11 |
@kanzure | install linux, use a terminal app, and just chroot into linux. | 20:15 |
@kanzure | i guess i mean install debian, not linux. | 20:16 |
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@kanzure | http://www.the-scientist.com/?magazines.view/magazineIssueNo/1634/title/The-Do-It-Yourself-Revolution/ | 20:35 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34457/title/The-Rebirth-of-DIYbio/ | 20:35 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34467/title/DIY-in-the-Lab/ | 20:35 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34442/title/Sticky-Lithography/ | 20:35 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34443/title/DIYbio--Low-Risk--High-Potential/ | 20:36 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34444/title/Regulating-Amateurs/ | 20:36 |
@kanzure | http://www.the-scientist.com/?articles.view/articleNo/34433/title/Do-It-Yourself-Medicine/ | 20:36 |
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@kanzure | "Humberto Macedo, an ALS patient in Brazil, started a Google Docs spreadsheet to track self-reported ALSFRS-R scores." clearly he most be stopped (using google docs is an obvious sign of being completely nuts) | 20:37 |
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@kanzure | haha they got todd to write the article on risk? that's the most biased source you can pick. | 20:41 |
@kanzure | "A key first step is choosing a leader. The NSABB, set up after the Fink Committee report, has already become a source of expertise in regulation and safety and is an obvious choice as a central authority to oversee DIYbio" | 20:42 |
@kanzure | ugh | 20:42 |
@kanzure | "Another important task is to encourage further institutionalization of the DIYbio movement." how did that sentence pass editing? that sentence just explodes all over itself. | 20:43 |
@fenn | yes they should all be put in padded rooms before they explode again | 20:44 |
@kanzure | "our plan is to institutionalize the non-institutionalization people" | 20:45 |
@fenn | you'd think it would be an obvious contradiction, but years of argument on the mailing list shows that many people don't see it that way | 20:46 |
@kanzure | probably because everyone is generally okay with things like biocurious and genspace existing.. but this means that when they get in the media splotlight, they don't ever clarify the non-institutional aspects of people who don't explicitly use their labs. | 20:47 |
@fenn | i haven't been following it for a while; has anyone associated with DIYbio actually done anything useful in the past year? | 20:47 |
@kanzure | patrik broke a printer and put some notes on instructables | 20:47 |
@fenn | okay, but that has nothing to do with biology | 20:48 |
@kanzure | cathal has been working on a custom plasmid that he plans to sell | 20:48 |
@fenn | what does it do? | 20:48 |
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@kanzure | i think his goal is to just make it easier to insert genes | 20:48 |
@fenn | fair enough | 20:49 |
@kanzure | not sure, i don't remember the details because he's sort of hush hush about it. | 20:49 |
@fenn | has anyone snagged a copy of biobrick dna yet? | 20:49 |
@kanzure | stacey put up some notes on instructables for another thermocycler http://www.instructables.com/id/Arduino-PCR-thermal-cycler-for-under-85/ http://github.com/kanzure/wiremound-pcr | 20:49 |
@kanzure | no, but juul would be the person to ask about that since he works for biofab/drew endy | 20:49 |
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@fenn | i thought the pvc+lightbulb thing was good enough | 20:50 |
@kanzure | i'm just trying to remember specific things you might be interested in | 20:50 |
@fenn | so, two hackerspaces and zero projects came out of them? | 20:50 |
@kanzure | yash: fenn wants a list of things that happened in diybio in the past year that might be categorized as progress | 20:50 |
yash | pfft haha | 20:51 |
@fenn | or even negative results | 20:51 |
@kanzure | this is up-to-date if you want to look yourself, but it's only what the news picks up http://diyhpl.us/wiki/diybio/faq/news | 20:51 |
@fenn | diybio should publish its own newsletter. what happened to that? nobody cares? | 20:51 |
@kanzure | a lot of the recent stuff has been commercial.. like john schloendorn finally started a company to sell reagents. | 20:51 |
@kanzure | mac wanted it to be his own thing, that postcard thing | 20:52 |
@kanzure | where he physically sends you a fucking postcard -_- | 20:52 |
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@fenn | i dont get the postcard idea at all | 20:52 |
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@kanzure | it's for people in the government who believe in information overload | 20:52 |
@kanzure | they think it's "neat" | 20:52 |
@fenn | the reason for diybio writing its own newletter is that other news sources just rehash the same stories over and over | 20:52 |
@kanzure | well jason/mac wanted people to write blog articles for a while, but nobody regularly submitted content | 20:53 |
@fenn | so if you want to know what's actually going on, you're out of luck | 20:53 |
@kanzure | and i guess jason/mac are both too lazy to do it themselves | 20:53 |
@fenn | bastards | 20:53 |
@fenn | printing out a hashtag doesn't count as editorial critique | 20:53 |
@kanzure | there was a biosafety thing that jason setup... but you have to go to diybio.org to type in your question to this box, and then an Expert might answer your question~~ | 20:53 |
@kanzure | lamest shit ever | 20:54 |
@fenn | is there a stackoverflow thingy for wetlab techniques? | 20:54 |
@kanzure | yes it's called methodmint and nobody uses it | 20:55 |
@fenn | http://biology.stackexchange.com/ seems too general | 20:55 |
@kanzure | http://abl.es/ | 20:55 |
@kanzure | methodmint renamed to abl.es and i haven't been able to remember it ever since | 20:56 |
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yash | ffs | 20:56 |
@fenn | it just looks like a blank white page | 20:56 |
@fenn | is this some kind of postmodern ironic satire? | 20:56 |
@fenn | "just change the values of the pixels to create your own instructions!" | 20:56 |
@kanzure | oh i didn't see this before, but they seem to have git repos for their site on the public web | 20:57 |
@kanzure | http://trac.methodmint.org/wiki/MethodmintRepositories | 20:57 |
@kanzure | i wonder if that is intentional | 20:57 |
yash | ok so seriously I guess openbiotech.com is diybio-related, but I don't really follow the google group that much | 20:57 |
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@kanzure | openbiotech.com is just a company though | 20:58 |
yash | yeah, but...still, I guess | 20:58 |
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@kanzure | database password is 'mould' http://trac.methodmint.org/browser/settings.py | 20:59 |
@kanzure | my guess is that this is not supposed to be public | 20:59 |
@kanzure | gentlemen, start your cloning. | 20:59 |
@fenn | woo a bunch of plaintext protocols that may or may not be correct | 21:00 |
@kanzure | right.. | 21:00 |
@kanzure | well that's the reaction to any book of protocols | 21:00 |
@kanzure | is there a way to clone from trac? it looks like it doesn't expose the git repository itself. | 21:01 |
@fenn | isnt trac usually svn? | 21:02 |
@fenn | anyway i doubt the protocols are in the repo, since it's django | 21:03 |
@fenn | you need to get a database dump somehow | 21:03 |
@kanzure | er no i am just interested in defacing their site or having access without their knowledge | 21:03 |
@kanzure | their protocols aren't that interesting | 21:04 |
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@fenn | if you dont care about version history you can just spider http://trac.methodmint.org/browser | 21:05 |
@fenn | oh i guess they are using git | 21:05 |
@kanzure | yeah i just thought trac would host something like trac.methodmint.org/methodmint.git or something | 21:07 |
@kanzure | aha http://git.methodmint.com/methodmint | 21:09 |
@fenn | gee i wonder what the password might be | 21:09 |
@kanzure | i think SECRET_KEY = 'u2y=71bj-k%-iubxq+gvtwo7__7#b2gr^^4ug)a4*uzy^c7d#m' | 21:12 |
@kanzure | could be used somehow, i just don't remember the exact algorithm django uses to generate its cookies. | 21:12 |
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@kanzure | something like sha256(SECRET_KEY + str(user.id)) | 21:12 |
@fenn | i'm always amazed at how much goes into a simple website | 21:15 |
@kanzure | i wasn't aware that they have taken 2 years to make the site so far, that's a bit extreme for the current state of the site. it looks like it's just a once-in-a-while hobby of theirs. | 21:15 |
@fenn | maybe it is a once-in-a-while hobby that they've been doing for two years | 21:16 |
@fenn | how do they get people to contribute protocols? | 21:18 |
@kanzure | i don't think they do.. it looks like their plan was "build it and they will come". | 21:20 |
@fenn | but they have contributions | 21:20 |
@kanzure | ah.. hashlib.sha1((key_salt + secret).encode("utf-8")).digest() | 21:20 |
@kanzure | the fuck is key_salt in this case | 21:20 |
@kanzure | hashlib.sha1("u2y=71bj-k%-iubxq+gvtwo7__7#b2gr^^4ug)a4*uzy^c7d#m" + str(963)).hexdigest() | 21:22 |
@kanzure | this does not match the cookie they gave me. | 21:22 |
@fenn | 379 users so far is not too bad http://abl.es/profiles/379/ | 21:23 |
@fenn | you know what a salt is right? | 21:23 |
@kanzure | yes but the salt has to be written down somewhere | 21:23 |
@kanzure | i don't see it in settings.py | 21:24 |
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@fenn | sorry i got you distracted on this | 21:28 |
@fenn | there are probably more worthwhile things to be doing | 21:28 |
@kanzure | like taking pictures of ads http://diyhpl.us/~bryan/bldfjiad.gif | 21:29 |
@fenn | why is it red? | 21:30 |
@kanzure | probably to match the app's background | 21:30 |
@fenn | is there OCR designed for screenshots? | 21:31 |
@kanzure | actually it started out as html | 21:31 |
@kanzure | http://diyhpl.us/~bryan/ad.html | 21:31 |
@kanzure | but if i want to store what the ad looks like i think an image is better | 21:31 |
@fenn | uh, okay | 21:32 |
@kanzure | can't have 100 iframes on a page showing ads | 21:32 |
@fenn | why not | 21:32 |
@kanzure | their remote javascript might change | 21:33 |
@kanzure | they might start blocking http requests that have my referer address | 21:33 |
@fenn | can't you just save the html? | 21:33 |
@kanzure | the html calls on some remote js | 21:33 |
@fenn | oh | 21:33 |
@kanzure | i could host that js myself but then i need to port all the things in it to work with my servers | 21:34 |
@kanzure | and then i need to do this each time they change their js | 21:34 |
@fenn | dont you love the internet | 21:34 |
@kanzure | not really | 21:34 |
@fenn | whats the word or observing a black box and designing a program that emulates all of its functions | 21:35 |
@fenn | for* | 21:35 |
@fenn | reverse engineering is not really what i mean, more like automated decompilation, but without any binary | 21:36 |
@fenn | i guess that's an NP hard problem | 21:36 |
@fenn | it would make for some kick-ass compression though | 21:37 |
@kanzure | i thought that was called black boxing | 21:37 |
@fenn | isn't that a word for something a human programmer does? | 21:37 |
@fenn | meh. nevermind | 21:38 |
@fenn | eureqa/symbolic regression gets close | 21:39 |
@kanzure | i keep finding creative excuses to use eureqa | 21:40 |
@kanzure | the last time i used it was to figure out the algorithm for how pokemon maps connect to each other in the games. | 21:40 |
@kanzure | there were about 10 variables that had to be manipulated somehow to get a series of bytes for each map | 21:40 |
@fenn | i want to run it on the tables in CRC handbook, machinery handbook, etc | 21:40 |
@kanzure | too bad that would be a DMCA violation. | 21:40 |
@fenn | no it wouldn't | 21:41 |
@fenn | i'm just deciphering the laws of the universe, a purely philosophical inquiry | 21:41 |
@kanzure | well, crc is hosted on the web somewhere, and it has a few anti-circumvention things. | 21:41 |
@fenn | ah i do have the pdf | 21:42 |
@kanzure | tell juri_ to make gift do it for you | 21:42 |
@kanzure | that's her job right? | 21:42 |
@fenn | gift doesnt do layout recognition does it? | 21:43 |
@kanzure | never used it | 21:44 |
@fenn | i think it just compares histograms or something silly like that | 21:44 |
@fenn | you wouldn't think it's such a hard problem to reverse engineer page layouts | 21:45 |
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@kanzure | well, make up some test cases and a scoring metric. | 21:46 |
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@kanzure | based on some known-good samples. | 21:46 |
@kanzure | and then release that somewhere public so that you don't forget about it. | 21:46 |
@fenn | i'm not really sure how to go about it | 21:47 |
@fenn | most computer vision tools are pixel based, but a pdf has infinite resolution | 21:47 |
@fenn | seems wasteful to throw away those sub-pixel coincidences | 21:47 |
@kanzure | is it a poor scan of crc? | 21:47 |
@fenn | no it's the cd that came with the book | 21:48 |
@fenn | some of the pages are scans though, because the authors were lazy | 21:48 |
@fenn | maybe it's better to just assume i only have the scan | 21:48 |
@fenn | this is such a dumb problem, i hate humanity | 21:49 |
* fenn goes away to mope | 21:49 | |
@kanzure | oh geeze http://news.ycombinator.com/user?id=bensw | 21:54 |
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nmz787 | so kanzure re: multi image select in android, looks like there is java code to add the checkbox to allow multi-select, but I'm wondering if I should do it in phonegap | 22:05 |
nmz787 | iphone i believe allows multi image selection | 22:05 |
nmz787 | but phonegap would allow a non-web app to take birth | 22:06 |
@kanzure | multi..select? | 22:08 |
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nmz787 | yeah, i'm not sure why you mentioned installing debian earlier | 22:21 |
nmz787 | that isn't something that's remotely possible to expect app users to do | 22:21 |
@kanzure | you said to upload images or something | 22:22 |
@kanzure | i assumed you meant on your phone | 22:22 |
@kanzure | so install debian in a chroot, then use a saner program like lftp, scp, etc., to upload multiple files. | 22:22 |
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@kanzure | authorea looks like a sharelatex clone http://news.ycombinator.com/item?id=5335304 | 22:47 |
@kanzure | https://www.authorea.com/ | 22:47 |
cpopell | kanzure--meeting with Andrew Herr Tuesday. Any questions for him? | 22:56 |
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@kanzure | hooray :rainbows: humanity+ is closing down | 23:55 |
archels | kanzure: so why did eleitl stop coming here anyway? | 23:59 |
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