2013-11-03.log

--- Log opened Sun Nov 03 00:00:13 2013
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kyknos_nmz787: thanks!00:25
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dv9700let's say I want to extract a certain gene from one organism from another. And let's assume it is far too big to synthesize de novo, how do I, well, "select" for it and splice it into say e. coli or whatever01:45
dv9700or more to the point, how is it isolated?01:46
dv9700also can you regrow plants from single callus cells and if so how long does it take (for example, with tobacco) as opposed to growing from seed?01:58
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poppingtonicpaperbot: http://www.frontiersin.org/Journal/10.3389/fnhum.2013.00589/full02:03
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/Making%20long-term%20memories%20in%20minutes%3A%20a%20spaced%20learning%20pattern%20from%20memory%20research%20in%20education.pdf02:03
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abetuskkanzure, you use vim?08:42
abetuskmore specifically, do you use tern with vim?08:45
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ParahSail1ntern?08:53
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abetuskautocompletion and ...file jumping maybe?... for javascript under vim09:07
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zrelughell010:43
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@kanzureabetusk: no i haven't used tern.13:24
@kanzureabetusk: yes i use vim13:24
abetuskkanzure, you do quite a bit of javascript programming, no?13:24
@kanzuredv9700: before people synthesized genes they would cut em out with endonucleases13:24
@kanzureabetusk: sadly yes :(13:24
abetuskI actually like it...13:25
abetuskyou just use vanilla vim?13:25
@kanzurei turn on syntax highlighting and i do whitespace tabs13:25
@kanzurei haven't found a good yaml syntax highlighter13:28
@kanzureand my python syntax highlighter seems to crap out after 200-300 lines (e.g. it can't detect long docstrings)13:29
@kanzurei think i would be happier with syntax highlighting if it wasn't as-you-type highlighting. it should just parse my changes when i reach the end of the line or liberally allow me to have incomplete blocks. then it can look at the entire file and let python tell it how to colorize it.13:30
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kyknos_paperbot:  http://www.sciencedirect.com/science/article/pii/000334727090045X14:08
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/5adf7e27f89b82d283ec4d8154dbf62.txt14:08
@kanzurehttps://www.cloudcracker.com/blog/2012/07/29/cracking-ms-chap-v2/14:21
@kanzurehttps://www.cloudcracker.com/dictionaries.html14:21
@kanzurehttp://www.copacobana.org/14:21
@kanzurehrmm and here's a bitcoin mining-hardware-contract-trading thing http://www.hashtrade.com/14:21
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bertmypaperbot http://dx.doi.org/10.1016/S0142-9612(98)00026-X15:16
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/83150d24e14d54f6c805ccd4ae15548e.txt15:16
bertmycome on15:22
bertmypaper http://dx.doi.org/10.1016/j.jiec.2008.02.00215:22
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bertmypaperbot http://dx.doi.org/10.1016/j.jiec.2008.02.00215:23
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/5e8b9378ad75f6608555d22f4b28f701.txt15:23
@nmz787paperbot: http://www.sciencedirect.com/science/book/978008091727615:26
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/90440843f7c0aeae3869c082cc92fa8c.txt15:26
bertmyhey nmz15:26
@nmz787yo15:27
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bertmypaperbot http://dx.doi.org/10.1016/j.jcis.2007.02.02415:28
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/aa94eae0494799bfcacdd16d8d5b4ad1.txt15:28
@nmz787bertmy: http://diyhpl.us/~nmz787/pdf/Proteins_and_cells_on_PEG_immobilized_silicon_surfaces_.pdf15:28
bertmythanks15:28
@nmz787bertmy: http://diyhpl.us/~nmz787/pdf/Surface_properties_of_silica_nanoparticles_modified_with_polymers_for_polymer_nanocomposite_applications.pdf15:29
@nmz787bertmy: http://diyhpl.us/~nmz787/pdf/Synthesis_of_polyethylene_glycol_PEG-grafted_colloidal_silica_particles_with_improved_stability_in_aqueous_solvents.pdf15:30
@nmz787bertmy: I have a bunch of liquid phase polymer synthesis stuff too if you're interested, where they were building off of PEG15:34
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bertmycool15:41
bertmypaperbot http://dx.doi.org/10.1002/jbm.a.1005715:41
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/be540d434dffc4b4f587139ca1e38f4.txt15:41
bertmyhow about this one?15:41
@nmz787paperbot: http://dx.doi.org/10.1016/B978-0-08-091727-6.50004-615:44
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/b0aa95e6cbdfefa0f98a06641787b49b.txt15:44
@nmz787paperbot: onlinelibrary.wiley.com/store/10.1002/jbm.a.10057/asset/10057_ftp.pdf?v=1&t=hnkxg2cf&s=a47a68ad8888f036f92cb5b06e2faa3a2f1f984a15:45
@nmz787paperbot: http://onlinelibrary.wiley.com/store/10.1002/jbm.a.10057/asset/10057_ftp.pdf?v=1&t=hnkxg2cf&s=a47a68ad8888f036f92cb5b15:45
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/fc7427252439b23fe0431769446001d9.txt15:45
@nmz787paperbot: http://onlinelibrary.wiley.com/store/10.1002/jbm.a.10057/asset/10057_ftp.pdf15:45
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/af109ce0a09e8d8889bbb01e4d035026.txt15:45
@nmz787bertmy: http://diyhpl.us/~nmz787/pdf/Room-temperature_preparation_and_characterization_of_poly_ethylene_glycol-coated_silica_nanoparticles_for_biomedical_applications.pdf15:45
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dv9700is there anyway to get access to JoVE without, you know, buying a subscription?18:11
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@kanzuredv9700: it turns out that they don't protect their actual assets18:47
@kanzuredv9700: so once you know their url structure, you're in18:47
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dv9700anyone able to help me with that?19:20
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justanotheruserWhat is the relationship between hplusroadmap and h+ magazine?20:05
Adifexis there one?20:05
justanotheruserif there is one20:05
Adifexspeaking of which, humanityplus.org doesn't do anything20:06
Adifexor I'm missing something20:06
justanotheruserYou mean http://humanityplus.org20:06
justanotheruserbecause that works for me?20:06
AdifexI mean, newsletter and engagement and such20:09
Adifexnot much happening, or so it seems20:09
justanotheruserhttp://hplusmagazine.com/ seems to be really slow20:10
justanotheruserlast update Oct 24th20:11
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jrayhawk20:05 < justanotheruser> What is the relationship between hplusroadmap and h+ magazine?20:16
jrayhawkbitterness, regret20:16
jrayhawknot much more20:16
justanotheruserjrayhawk: What came first20:17
jrayhawkprobably the bitterness20:18
justanotheruserjrayhawk: IRC has more smartasses per capita than any form of internet communication I have used20:20
jrayhawkhttp://wiki.transhumani.com/index.php?title=Bryan_Bishop http://en.wikipedia.org/wiki/Humanity+#H.2B_Magazine20:20
justanotheruser:)20:20
jrayhawkseems like if you wanted answers instead of smartasses, you would've used google20:20
jrayhawkgoogle should really include smartasses20:20
jrayhawkseems like IRC could be eliminated at that point20:21
justanotheruserlol20:21
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justanotheruserhmm, I wish the wiki included the h+ drama20:22
justanotheruserKnow anything about skdb jrayhawk?20:24
jrayhawkSome! It's just ideas at that point AFAIK; kanzure's been busy and not super sure on how to make progress with the concept and fenn's hard for me to keep track of but hasn't expressed much interest in it as of late20:25
jrayhawkbut they were the two people who really cared about it20:26
justanotheruserOh, it seems very interesting. Honestly I think it would be better to implement it as a website though20:26
jrayhawkimplement... a standardized resource management and instruction system... as a website...20:27
jrayhawktransport is literally the least complicated part of the problemspace20:27
justanotheruserYeah, just host all the files there, allow users to see all the data without using commands20:28
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justanotheruser(11:27:40 PM) jrayhawk: transport is literally the least complicated part of the problemspace> True, but in terms of growth I think it would be a good thing20:28
justanotheruserright now it seems there are 5 projects you can use skdb with20:28
jrayhawkthere are?20:29
justanotheruseras far as I can see20:29
justanotheruserNot that you *can*, but currently are. Unless there are SKDB packages missing20:29
justanotheruserfrom the wiki20:30
jrayhawkPerhaps you should go to http://www.thingiverse.com/20:30
justanotheruserAre all things on thingiverse available as SKDB packages?20:30
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jrayhawkNo, Thingiverse is the conclusion of the mentality that you should slap crap on the web and hope network effects make something useful out of it.20:33
jrayhawkWhich, to be fair, is working reasonably well.20:33
jrayhawk"Worse is better" and all that.20:33
jrayhawkBut there's a lot of work to do on the SKDB design before the public should be attempting to use it for useful stuff.20:34
jrayhawkThere's a lot of cost associated with bad design decisions.20:34
jrayhawkBoth for users and developers.20:35
justanotherusertrue20:35
jrayhawkAnd Thingiverse is in the position of baring that cost.20:36
jrayhawkbearing20:36
jrayhawkwords are hard20:36
justanotheruserDo you think there will be DIY 3d metal printing?20:37
dv9700justanotheruser, there already is, it's just expensive and impractical20:37
justanotheruserah20:38
dv9700metal is rather complicated, basically you just make a gigantic weld joint20:38
dv9700which is useless20:38
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jrayhawkI think there has been for a few years. I guess jsmiller isn't here anymore?20:38
dv97003D printing is much more accurately referred to as rapid prototyping20:39
jrayhawkanyway, development for that sort of thing happens in #reprap20:39
dv9700and you don't prototype in metal, you prototype in plastic20:39
dv9700also, if you want something that doesn't require a vacuum chamber, you need 40 kW lasers, which, oh by the way, require a DARPA license20:39
jrayhawkhttp://reprap.org/wiki/Metal_deposition_print_head20:40
dv9700jrayhawk, yes, there are ways around it, you can use low melting allows20:40
dv9700people who think 3D "printing" is going to change the world tomorrow know next to nothing about the engineering problems. Not to say the tech isn't neat, but it isn't a panacea20:41
jrayhawkIt'd pretty doubtful it'll be more useful than subtractive metal manufacturing in the next decade, but if you're enamoured with the technology, you can always work on development.20:44
jrayhawkAt least it'll be fun for art trinkets.20:44
dv9700jrayhawk, yeah like I said, it's not so much that I want to say it's useless, but rather I grow weary of the delusional people who think they're GONNA CHANGE THE WORLD LEL20:48
justanotheruserWhat, with metal printing?20:51
dv9700justanotheruser, no just in general20:51
dv9700with 3D printing, techno-utopianism in general irritates me20:52
dv9700"if we just air dropped iPhones in Africa everything would be fixed"20:52
dv9700because Africa is a single country of course with a completely homogenous culture and set of problems20:52
dv9700it's white man's burden 2.020:53
justanotheruserdv9700: umm.. does anyone actually believe giving iphones to africa will fix them?20:53
dv9700justanotheruser, that was facetious, but yeah, just look at OLPC20:53
justanotheruser<(11:52:17 PM) dv9700: with 3D printing, techno-utopianism in general irritates me> You must love project venus20:53
dv9700somehow, I think figuring out how to deal with, you know, eating, is higher up on their list than useless gadgets20:53
dv9700oh god20:54
dv9700it's by the zeitgeist guy?20:54
dv9700fuck no20:54
justanotheruseryes20:54
dv9700fuck him for his ahistorical bullshit20:54
dv9700and his 9/11 truther garbage20:54
justanotheruserdv9700: but if we just fight against the illuminati and 3d print houses everything will be fine20:54
dv9700justanotheruser, oh god, no, don't even get me STARTED on "3D printed houses"20:55
dv9700talk about a solution looking for a problem20:55
dv9700or you could do this really cool thing called taking planks of wood and hammering them together for a fraction of the price20:55
dv9700electricity? lel20:55
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justanotheruserWhoever is managing diyhpl.us, probably kanzure: For some reason you can't use the search with logging in21:12
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@kanzurejustanotheruser: the only relationship between hplusroadmap and hplusmagazine is that i mistakingly did work for hplusmagazine.com in the past, i guess21:27
@kanzureAdifex: correct, humanityplus.org is basically a newsletter and not worth guessing about21:27
@kanzure20:16 < jrayhawk> bitterness, regret21:27
@kanzureah my spokesperson..21:27
@kanzure20:27 < jrayhawk> transport is literally the least complicated part of the problemspace21:28
@kanzuresee, i would have just gone ballistic and started telling everyone to go fuck bodies in graves or something21:28
@kanzure20:28 < justanotheruser> right now it seems there are 5 projects you can use skdb with21:29
@kanzure20:29 < jrayhawk> there are?21:29
@kanzureindeed! there are multiple skdb packages: screw, thread, dremelfuge, etc.21:29
@kanzurethingiverse pages are not skdb packages21:29
justanotheruserkanzure: why would you have gone telling people to be necrophiles?21:30
@kanzureiirc our collective opinion on project venus is net negative, so that doesn't surprise me that dv9700 would say so21:31
@kanzurejustanotheruser: which search are you referring to?21:31
dv9700kanzure, how do you mean?21:31
justanotheruserkanzure: http://diyhpl.us/wiki/21:31
dv9700also anything started by a guy who believes that Jesus is literally a roman clone of Horus is utterly insane and idiotic21:31
@kanzurejustanotheruser: i would have told them to fuck off because of how extremely apparent it makes their lack of comprehension of the scope of the problem. transferring packages over http in a web ui versus ftp versus email has almost zero relevance.21:32
@kanzurejustanotheruser: you hsould bug jrayhawk about that one; but if you really must search, just do: git clone git://diyphl.us/srv/git/diyhpluswiki.git21:32
dv9700also this "venus" thing just comes across as technocratic singularity millenarianism21:32
@kanzureiirc the venus person doesn't profess any knowledge of singularity technobabble, not that it matters..21:33
dv9700kanzure, they might not, but it's a similar line of thinking21:33
dv9700"let's handwave away all of these incredibly difficult problems with TECHONOLOGY"21:34
@kanzurenow you've lost me21:34
dv9700kanzure, do you ever read Time? If so, or not, did you at least happen to see a recent issue claiming that Google is going to "solve" aging?21:35
dv9700that's the kind of garbage I'm talking about21:35
@kanzurethat's clearly just journalists misunderstanding press releases21:35
@kanzurethis is why you shouldn't read the news21:35
dv9700is it? Google bothers me on the accoutn that they seem to believe delusions of grandeur21:35
justanotheruserkanzure: I don't really understand that. Do you literally mean don't read any news?21:35
@kanzuredv9700: if they want to invest money into their own projects, why not let them? yes their marketing is going to be ineffective, but i think their goal was just to get a press release out, not something that makes sense.21:36
dv9700kanzure, I don't read Time, but regardless, let's assume you're right, Google doesn't seem to mind letting that kind of BS be out there21:36
dv9700kanzure, that's not what I'm saying, it's that certain people at Google have some sort of messiah complex about themselves21:36
dv9700it's bizarre21:37
@kanzuredv9700: so is your complaint about (1) funding people who are working on research projects related to aging, (2) bad marketing, or (3) bad journalism?21:37
dv9700kanzure, my complaint are companies making completely bullshit claims21:37
dv9700that pander heavily21:37
@kanzurei think their claim that they are investing in research projects related to aging is probably true. they probably do have some biologist on payroll somewhere.21:37
dv9700that's entirely different then achieving immortality21:38
@kanzurei21:38
@kanzure!~21:38
dv9700which is what their PR is trying to suggest21:38
@kanzuregrr ssh21:38
@kanzurejustanotheruser: yeah, i am only mostly serious there. in the vast majority of cases the news is absolutely wrong about something they read from a paper.21:39
dv9700Google has this whole aura that they sell, that they're this savior of the earth. No, they're a profit-seeking corporation, and there's nothing wrong with that, but jesus christ come back down to earth will you21:39
@kanzurei didn't know we were talking about a fictional aura. next time please mention context upfront...21:39
dv9700it's an expression. . .21:39
dv9700Technocracy is an intrinsically dangerous concept, and I immediately skeptical and suspicious of those trying to sell that idea21:40
@kanzurewhat does any of this have to do with technocracy?21:40
@kanzurea moment ago you were complaining about their PR campaign21:41
dv9700pandering to the public namely21:41
dv9700google fancies themselves technocrats21:41
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dv9700as do singularitarians, techno-utopians, and that whole gross silicon valley culture21:41
@kanzurei think you keep changing context in this conversation and i hate you. bbl.21:41
justanotheruserdv9700: what? I don't think google takes any stance on technocracy21:41
dv9700justanotheruser, Google has openly said that we "need more engineers in government" or whatever21:42
dv9700I hear lots of engineers types praise countries like China because "hurr engineers in government" ignoring the whole "human rights" thing21:42
justanotheruserYeah, that isn't exactly a technocracy, but I see what you're saying.21:42
dv9700I mean more figuratively21:43
dv9700it's under the mantle of scientism21:43
ZhwaziEngineers in China have experimentally determined the tensile strength of the average Chinese male, I'm sure. They probably even have a function to look up tensile strength by age.21:57
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jrayhawkjustanotheruser: it might be prudent to watch http://www.youtube.com/watch?v=iZM_JmZdqCw23:54
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jrayhawkh+ magazine and the WTA are not really interested in a determinate future because it's much less sensationalizable23:56
jrayhawk##hplusroadmap is a community of people with a determinate outlook23:56
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