2014-01-23.log

--- Log opened Thu Jan 23 00:00:42 2014
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kanzurebleep bloop05:45
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JayDuggerbloop bleep (at more than 2 kb/s)06:53
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kanzureyep..06:56
pete4242How's the roadmap looking? Are we making progress?07:06
kanzurei'd say yes, why are you asking and who are you and why are you saying "we"07:09
FourFirepete4242, some things are happening, others aren't as fast ad we'd like07:09
FourFirebut yeah, we're getting there07:10
kanzurefuck you FourFire you've never even seen the roadmap how would you know07:10
kanzurenone of this makes sense07:10
FourFirekanzure, please don't swear at me withou reason07:10
kanzureit is good reason. i am highly confident that you haven't.07:10
FourFirePM07:10
kanzurei don't see a pm07:10
pete4242I'm nobody (important). I mean 'we' as humanity..07:11
kanzureoh, screw humanity07:11
kanzureyou shouldn't care about whether or not "humanity" is making progress07:11
pete4242You don't mind that people are suffering?07:11
kanzurewhat does that have to do wth anything?07:11
kanzure*with07:11
pete4242It upsets me.07:11
pete4242I think we have a moral duty to help people.07:12
FourFirepete4242, currently life sucks for a lot of people07:12
pete4242no shit07:12
FourFirefor a very big number of people it sucks so badly that they can't even sustain it07:12
pete4242What should I care about, Kanz?07:12
kanzurewell you're in a transhumanism channel07:12
pete4242indeed07:12
pete4242in the transhuman groove07:13
kanzureso i would say personal individual enhancement07:13
kanzurehttp://diyhpl.us/wiki/declaration is a fairly accurate portrayal of the shared values in this channel07:13
pete4242I'm just one human. Why not try to enhance everyone?07:13
pete4242then we can be transhumanS not just a transhuman07:14
kanzureuh....07:14
pete4242I wonder if that document has changed since I last looked at it.07:14
kanzure"why not try to enhance everyone?" do you include all lifeforms?07:14
kanzureare you an omega pointist or something07:14
kanzurelike, do you believe that all lifeforms everywhere should be changed to have intelligence and then uploaded07:15
kanzurethere's a strain of transhumanists that believe this, and i forget what they call themselves07:15
kanzurebut i think you are one of them07:15
kanzurebased on the available evidence you have presented me07:15
pete4242You told me not to speculate, once07:15
pete4242It's something to do with entropy, blah blah07:16
pete4242I won't bore you with philosophy07:16
kanzurei'm not speculating, you just said "why not try to enhance everyone?" and it seems to be a conviction you were positing earlier07:16
pete4242I don't know. I just like being happy, and I'm more happy when the whole universe is more happy.07:18
gradstudentbotDon't even ask how my research is going.07:18
kanzureare you david pearce?07:18
pete4242hehe07:18
kanzure?07:18
pete4242No. I enjoy eating animals.07:18
pete4242I'll eat anything dumber than me.07:18
kanzurebut you see mto be aware of him07:18
kanzure*seem to07:19
pete4242He's a friend.07:19
pete4242I asked him to be the leader of my new cult.07:19
kanzureso are you asking me to show arguments for why i am more interested in personal human enhancement than global humanity enhancement (perhaps forced etc)?07:19
kanzureyour.. new cult.07:19
pete4242that's what I said.07:20
pete4242wanna join? We'll have a cool bio lab. In Portugal.07:20
kanzuretiago rodrigues or vitorino ramos07:21
kanzurecan't decide which one to guess07:21
pete4242Are they people or places?07:21
pete4242My name is Peter.07:22
kanzurei thought they would be people in the lab already but i guess not07:22
kanzuresuch slackers07:22
pete4242There is no lab. yet. The people will come from all over the world.07:22
kanzurewell they will probably show up eventually07:22
pete4242Should we welcome them?07:22
kanzurethen why would you say portugal07:22
kanzurei would appreciate it if you would say what you mean instead of bullshitting me07:23
FourFire"<pete4242> I'll eat anything dumber than me." yay, do you eat retards?07:23
pete4242Because that's where we plan to build the lab.07:23
kanzureFourFire: cannibalism is a thing that happens you know..07:23
pete4242Only the delicious ones.07:23
FourFirekanzure, duh07:23
pete4242I do try to say what I mean. Any help is appreciated.07:24
kanzurehelp about what07:24
FourFireso pete4242 what causes life as or more intelligent than yourself to have a right of happiness?07:24
kanzureugh this is going to be a philosophical dick flinging contest right here07:25
pete4242There are no rights. Just things I want and things I don't want.07:25
kanzurei'd rather you not get into an argument about hedonistic imperatives07:25
pete4242I already told you I won't bore you with philosophy!07:25
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FourFire"dick flinging" gives an interesting mental picture07:26
FourFireit's  a .gif07:26
pete4242I don't want to know.07:26
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pete4242I hate meat.07:26
pete4242unless I'm eating it.07:26
FourFirecold, raw chicken breasts rubbing against your palms give you the willies?07:27
pete4242Nah. Dead meat is fine.07:27
pete4242I hate thinking meat.07:27
FourFirecan we more closely define this "hate" ? because hate can mean anything from vaguely annoyed at to "will not stop until I rid the earth of this scourge upon existence"07:28
pete4242heh. Kanz will get mad. So no.07:28
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kanzurecan't we all just write software and build hardware07:29
pete4242we can.07:29
kanzureinstead of planning to grey gooify the world07:29
kanzurethat will come naturally07:29
FourFirekanzure, I'd just like to state that I agree with parts of but not all of the declaration07:30
pete4242edible hardware is good. No computation to do? well it makes a tasty snack!07:30
FourFireyeah, I'll go on with furthering life extension technology07:31
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kanzurei don't know what you mean08:20
kanzureplease be more specific08:20
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delinquentmehue hue hue10:44
delinquentmeZOMGz10:44
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Burninatepaperbot: http://rsta.royalsocietypublishing.org/content/371/1992/20120269.full.pdf+html12:35
paperbothttp://libgen.org/scimag/get.php?doi=10.1098%2Frsta.2012.026912:35
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delinquentmepaperbot,  http://www.nature.com/nrd/journal/v5/n3/full/nrd1985.html15:36
paperbothttp://libgen.org/scimag/get.php?doi=10.1038%2Fnrd198515:36
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delinquentme10 times the energy density of the lithium-ion batteries in your mobile devices.16:17
delinquentmesugar-powered-biobattery paperbot  http://www.nature.com/ncomms/2014/140121/ncomms4026/full/ncomms4026.html16:17
delinquentmepaperbot  http://www.nature.com/ncomms/2014/140121/ncomms4026/full/ncomms4026.html16:19
paperbothttp://libgen.org/scimag/get.php?doi=10.1038%2Fncomms402616:19
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drewbugAnyone get their DNA sequenced?16:21
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superkuhJust 23andMe.16:56
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jrayhawkis there a sequencing service that does anything more than four codon types17:40
jrayhawkfor DNA, that is17:40
yashfour codon types?17:44
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yashgarothlike start, stop, coding, and mystery option?17:45
jrayhawk5-methylcytosine, 5-hydroxymethylcytosine, etc.17:46
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yashgarothprobably not commercially for consumers, because it's super expensive compared to normal sequencing17:47
yashgarothalso, not very useful since there's a lot of variation between cells, and it's not really interesting outside of hard-to-sample tissues17:54
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@ParahSailinthats bases, not codons18:28
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justanotherusergradstudentbot:18:34
gradstudentbotPaper submitted.18:34
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@heathdid someone ever save this http://web.ornl.gov/sci/besd/bsd/nsd/education/afm_high.shtml19:58
@heatharchive.org didn't19:58
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drewbugheath: http://web.archive.org/web/20100325192206/http://www.ornl.gov/sci/besd/bsd/nsd/education/afm_high.shtml20:12
@heathhttp://www.gizmag.com/lego-arduino-nanometer-resolution-atomic-force-microscope-lego2nano/29238/ http://lego2nano.openwisdomlab.net/ http://coidea.cc/project/2a954a49066468ff/solution/a27f0152587e08c6 http://lego2nano.openwisdomlab.net/team2.html http://lego2nano.openwisdomlab.net/img/450px-2+4_darklaser.jpg20:26
@heathcool, thanks drewbug20:26
kanzurehah,20:29
kanzure"The card fees gasoline retailers pay are staggering. They are on average the second-highest operating cost for gas retailers (higher than rent on their stores). The fees were more than $11 billion last year – 87% higher than the entire industry’s profits. That makes six years in a row that the industry paid more in card fees than it made in profits. Those fees add an average of 7 cents per gallon to the price of gasoline sold in the ...20:29
kanzure... United States and the fees have been exploding. Between 2004 and 2011 while the price of gasoline went up 80%, card fees increased 180%"20:29
kanzurehttp://www.forbes.com/sites/beltway/2012/05/09/gas-station-operators-are-crying-over-credit-card-fees/20:29
kanzureand the typical: "Ask any business owner who accepts credit cards about swipe fees and you'll get an earful. Every time a customer pays with a card, up to 4 percent of the sale goes back to the banks and credit card companies. Considering that the average profit margin for most retailers is 1-2 percent, these fees drive up prices and make it harder for small businesses to expand, hire more workers or even stay in business."20:30
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Burninatein China I was laughed at for trying to use my Visa-network check card and spent five minutes trying to explain why there was no pin number21:03
kanzurego on21:04
BurninateIn the US, anything that goes over a credit network is loss-limited in the event of theft21:04
Burninatewhereas if you have a debit card magstripe and pin number you can empty the entire account21:05
Burninateapparently basic credit card transactions are usually pin-protected in China21:05
gradstudentbotI think my PI hates me.21:05
BurninateI have a check card that can go through either network, credit card or debit card21:06
drewbugBut you didn't want to do a debit transaction.21:06
Burninateright, because vulnerable21:06
Burninateand they were at a loss for why I would choose the option that involved no pin number at all, or why sucha n option existed21:06
drewbugHeh.21:06
drewbugDid it eventually work?21:06
Burninateyes21:06
Burninatethe card itself never failed me, but the banks do have some pretty restrictive policies on overseas cash advance21:07
kanzureyeah, my bank has this weird text box where it asks you to type in travel plan details21:07
Burninatetry to get cash out of an ATM and you might find yourself limited to 500 yuan at a time21:07
kanzureno specific format21:07
kanzurejust type in the places, some words about your trip21:08
kanzureand magically none of the transactions will be flagged21:08
kanzureseems suspicious21:08
kanzurei don't think they have a fraud prevention department21:08
kanzureit's just a ruse21:08
Burninateyeah, I did that beforehand21:08
Burninateonly time I've ever flagged my card was when I got too frisky on a Steam sale21:09
kanzureheh 500 u[B[Bheh 500 yuan21:09
kanzureirc failure21:09
gradstudentbotWell, I can't really talk about it because I'm trying to get it published in Science or Nature.21:10
Burninatethe limits varied, some were 2000, some were unlimited21:10
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drewbughttp://www.nbcnews.com/science/cloned-cats-glow-6C1040533721:49
drewbugWould it be possible to do that to a human?21:49
drewbugA currently living human, that is.21:49
kanzuresigh21:49
drewbugSorry if it's been beaten to death.21:49
kanzurewell, the cats have been21:49
Lemminkainenpossible? yes21:49
Lemminkainenpractical? maybe21:49
Lemminkainencheap? nope21:50
kanzurehuman glowth is just a natural extension that will also be beaten to death and it will annoy everyone... someone go get stelarc.21:50
kanzuredamn, humanglowth.com is available21:50
drewbuggTLDs are coming soon, maybe we can get human.glowth21:51
gradstudentbotThe culture got contaminated.21:52
Lemminkainenrun it again, gradstudentbot21:52
gradstudentbotI need to send that abstract.21:52
Lemminkainenno you don't, go make some fucking data21:52
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drewbugWhy has nobody glowth'd themselves yet?22:02
drewbugAnd what makes it expensive to do?22:04
Lemminkainenwell what vector would you like to use?22:05
drewbugThe best one for the job.22:05
Lemminkainenthat's debatable22:05
Lemminkainenbut let's assume you want to make your skin glow, so you go with a liposomal delivery medium22:06
Lemminkainensay, Lipofectamine-300022:06
Lemminkainenit runs about $2500/kit for any appreciable amount, and you'll need many kits22:06
Lemminkainenbut on top of that, you're going to need to transfect a lot of genetic material as well22:06
drewbugWhat genetic material would that be?22:07
Lemminkainenif you want permanent glowth, you'll need to transfect your skin cells and, more importantly, your basement membrane cells with a specially designed CRISPR or TALEN driven by a constantly on promoter22:07
Lemminkainenthere's an open-source TALENs method called Golden Gate that you could use to design template, order that in, and then grow it in mass22:08
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Lemminkainenthen you'd have to purify it en masse (make sure to check against endotoxin) and get it into the Lipofectamine kits22:08
Lemminkainenand after that you'd get to rub it all over your skin, preferably by taking a gentle salt bath and remaining there for 6 hours or more22:09
drewbugAnd then you glow forever?22:09
Lemminkainenthing is, Lipofectamine is fairly shit at transfection efficiency, so the first time you do this you might get 20% efficacy22:10
Lemminkainenand a lot of dead skin cells (Lipofectamine-3000 just dropped this week with the headline "NOW LESS TOXIC")22:10
Lemminkainenit's still fairly toxic22:10
drewbugWhat are the other delivery vectors?22:10
Lemminkainenso you'd get to do repeated administrations of your glowey lipofectamine and hope that it keeps working without causing too much pain22:10
Lemminkainenyay22:10
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Lemminkainenthere are also adenoviruses, adeno-associated viruses, and a few other viral vectors22:11
Lemminkainenbut they tend to come with some unpleasantly inflammatory side-effects and have a bad habit of evolving and shit22:11
drewbug"inflammatory"?22:11
Lemminkaineninflammatory = your immune system reacts22:11
kanzurethere is a lot of history of humans getting compromised immune systems because viruses are very good at their function22:12
kanzureinflammatory side-effects include death22:12
Lemminkainenin extreme cases, yes22:12
kanzurealthough the lentiviral vectors seem like an okay candidate for not killing you22:12
Lemminkainenbut that hasn't stopped the EMA from approving Glybera (an AAV) for market22:12
kanzurewhich one is EMA?22:13
LemminkainenEuropean Medical Association22:13
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LemminkainenGlybera treats thalassemia for about $1.1M/treatment22:13
@kanzuredamn i can't come up with an EMA joke for /topic22:14
@kanzurefederal death administration is staying for now22:14
LemminkainenI think I like the idea of this channel being sponsored by George Church's beard better than Church hisself22:14
@kanzurewell the whole point is that george church sponsors everything22:15
@kanzurehe probably doesn't even know his complete list22:15
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LemminkainenI'd like it even better if Feiyang and Hammond would grow beards as part of being included in Editas22:15
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@kanzureso who's to say he's not thinking fondly of hplusroadmap?22:16
Lemminkainenanyway drewbug there's also a bunch of polymer-DNA complex delivery mechanisms as well, but as the blasted patent landscape of the PEGylation craze shows, it works for shit22:16
LemminkainenI suppose you could try suspending TALENs directly in DMSO and hoping that that works22:16
drewbugHmm.22:16
Lemminkainenkanzure I hope he masturbates to hplusroadmap22:17
@kanzureuh, okay?22:17
Lemminkainenbecause that would be hilarious22:17
drewbugSkin cells and basement membrane cells.22:17
drewbugCould you do others?22:17
Lemminkainendepends on how you want to get to other cells22:18
Lemminkainenluciferase/luciferin transfection of buccal cells would be neat, then you'd have red-glowth saliva22:18
gradstudentbotOh that's interesting, do you want to write a paper together?22:19
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drewbugI like that.22:19
drewbugWhy red?22:19
drewbugYou could do others, right?22:19
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@kanzuregradstudentbot: aren't you already coauthoring like 40 other papers?22:21
gradstudentbotThat's definitely a Nature paper.22:21
drewbugLol.22:21
Lemminkainenhttp://www.promega.de/resources/product-guides-and-selectors/protocols-and-applications-guide/bioluminescent-reporters/?__utma=1.1542101436.1390544448.1390544448.1390544448.1&__utmb=1.1.10.1390544448&__utmc=1&__utmx=-&__utmz=1.1390544448.1.1.utmcsr=google|utmccn=(organic)|utmcmd=organic|utmctr=(not%20provided)&__utmv=-&__utmk=23346908622:21
Lemminkainenthere you go drewbug22:21
@kanzurethat is the worst url ever22:21
@kanzurewhat the fuck promega22:21
Lemminkainenhey, they make molecules, not websites22:21
Lemminkainen(or customer support)22:21
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@kanzureit's like they attempted to do seo but then it backfired when they realized none of their customers use the internet22:21
drewbugkanzure: http://www.promega.de/resources/product-guides-and-selectors/protocols-and-applications-guide/bioluminescent-reporters/ works just as well22:21
@kanzureyeah because when i'm searching for a promoter, "product guide" is in my query22:22
@kanzureyeesh22:22
Lemminkainenain't worth your worry22:22
drewbugLemminkainen: Thank you for the link.22:23
@kanzureit's something that could be done better22:23
@kanzureand also, promega itself makes a killing22:23
@kanzureso leaner entities can probably eat its lunch22:23
Lemminkainenno problem drewbug22:23
Lemminkainenand lately I am such a leaner entity22:23
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drewbugLemminkainen: Could you do luciferase/luciferin transfection of skin cells?22:35
drewbugAnd the basement membrane cells.22:35
drewbugInstead of fluorescence.22:35
Lemminkainenthat's what I was saying22:36
drewbugOh.22:36
drewbugCool.22:36
drewbugThank you.22:37
gradstudentbotHuh, this western worked on the first try.22:39
drewbugLemminkainen: Hypothetically, if you succeeded, could you then undo it?22:44
Lemminkainenby doing the same thing with an antisense transfection, yes22:50
drewbugAre they any downsides other than cost and being hated by everyone?23:02
drewbugWhen using the Lipofectamine method, that is.23:02
Lemminkainentoxicology23:07
LemminkainenLipofectamine has a bad habit of killing off the cells you're trying to transfect23:07
Lemminkainenproblem is, so does almost everything else: GeneJuice, JetPEI, Invivofectamine23:08
drewbugChance of death is very low, though?23:08
LemminkainenleghlaHchu'be'chugh mIn lo'laHbe' taj jej23:09
Lemminkainen"a sharp knife is nothing without a sharp eye"23:10
drewbugI do not understand.23:10
LemminkainenKlingon proverbs aside, the mortality risk is low23:10
Lemminkainenbut morbidity risk is high23:10
drewbugWhat kind of morbidity?23:10
Lemminkainenskin death23:11
drewbugWould it not grow back?23:12
* Lemminkainen shrugs23:12
Lemminkainenthat depends on how good a job you did at transfecting it23:12
Lemminkainenif you get off-site mutagenesis of the basement membrane there might be some major problems23:14
Lemminkainenso best to try a test patch somewhere first23:14
drewbugWhat do you mean by that?23:14
drewbug"a test patch"?23:15
Lemminkainena small area of your skin, somewhere not too noticeable, not too flexible, that you can try the transfection on first before slathering it over all of your skin23:19
drewbugWait, so, it wouldn't spread?23:20
drewbugCould I do it on just one finger?23:20
Lemminkainenyup23:20
Lemminkainenif you're using a liposomal or polymeric transfection methodology, it won't spread past where you apply it (much)23:21
drewbugAnd it'd still be permanent?23:21
Lemminkainenif you get to the skin stem cells, yeah23:21
drewbugHow does one get to the skin stem cells?23:22
Lemminkainenbasement membrane penetration23:22
drewbugGotcha.23:22
gradstudentbotWhy did I go to grad school?23:23
gradstudentbotYeah, but biobricks don't even work.23:23
drewbugWould it be possible (and, if so, practical) to hook it up to a "trigger"?23:35
drewbugA neurological one, perhaps. Or, muscle use.23:35
gradstudentbotI'll be at the microscope.23:37
Lemminkainenish23:37
Lemminkainenoptogenetic triggers are getting better23:37
Lemminkainena muscle- or neuro-trigger would be more difficult23:37
drewbugOptogenetic wouldn't lead to a feedback loop?23:38
Lemminkainendepends on the frequency of light23:38
Lemminkainenbut then, it's just making light, not insulin, so no problem if there does wind up being a loop23:38
drewbugHow long would it last if it were an optogenetic trigger?23:39
gradstudentbotHow many papers do you have published?23:39
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Lemminkainenthe optogenetic trigger would just be "turn on"23:42
Lemminkainenthe genetic programming would be permanent if you do it right23:42
drewbugI mean, how long would it stay turned on?23:42
Lemminkainenyou could also build in a "turn off" switch23:42
drewbugOr would you need a turn off23:42
drewbugOh23:42
Lemminkainenas long as you left it on23:42
drewbugOkay.23:42
drewbugHuh.23:42
drewbugVery, very, very cool.23:43
drewbugTwo different light frequencies, one for off and one for on?23:43
Lemminkainenyup23:43
LemminkainenEd Boyden's group has done that with neurons23:43
drewbugWould happens if both happen?23:43
Lemminkainennull23:43
drewbug*What23:43
drewbugInteresting.23:44
Lemminkainenshould be noted I have a vested interest in this23:44
drewbugOh?23:44
LemminkainenI'm gearing up to release some really good transfection reagents this summer23:45
drewbugExpensive?23:45
Lemminkainenlooking like it will have to be until they're sufficiently idiotproofed23:45
drewbugAny idea on pricing?23:46
Lemminkainenthe math we've done so far for them suggests about $700 for a basic kit23:46
drewbugAwesome!23:47
drewbugWhat would something like this need?23:47
Lemminkainen1 kit should be enough to fully transfect 1 mouse23:47
drewbugSo, a bunch.23:47
Lemminkainenbesides the kit itself you'd need some fancy salts and fancy waters and pipettes to actually do the transfection23:47
drewbugFancy pipettes?23:47
drewbugOh23:48
drewbugI guess you didn't say that.23:48
drewbugPipettes?23:48
Lemminkainenmicropipettes23:48
Lemminkainenstandard molecular biology tool23:48
drewbugWhat are they needed for, though?23:48
Lemminkainenvery precisely and sterilely transferring tiny amounts of expensive liquids23:49
drewbugWhat step of the process would that be?23:49
Lemminkainengetting your plasmid on the inside of the transfection-enabling bits23:49
--- Log closed Fri Jan 24 00:00:00 2014

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