2014-06-21.log

--- Log opened Sat Jun 21 00:00:41 2014
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jrayhawk_man, that guy is freakin' ready for the post-apocalypse00:54
mosasaurit's difficult to prepare for a post-apocalypse if it can take so many forms01:02
EnLilaSkoJust zombies or aliens01:02
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jrayhawk_don't forget paperclip optimizers01:15
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mosasaurany paperclip optimizer smart enough to be somewhat effective will hack their utility function01:15
jrayhawk_new utility function: destroy all humans01:15
mosasaurnah, still a utility function. It will keep hacking them until it's something else.01:15
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mosasaurofc that may happen after humans are extinct01:27
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||0_-_0||paperbot http://www.ncbi.nlm.nih.gov/pubmed/169740201:28
paperbothttp://libgen.org/scimag/get.php?doi=10.1038%2F346818a001:28
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Stevkopaperbot: http://link.springer.com/article/10.1007%2FBF0158022307:27
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/c3ca72faf9b0ae99828ba41249baf6f9.txt07:27
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kanzurehttps://github.com/pminervini/node-rtlsdr09:05
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JayDuggerpaperbot:http://www.ncbi.nlm.nih.gov/pubmed/1035093010:22
JayDuggerpaperbot10:22
JayDuggerpaperbot http://www.ncbi.nlm.nih.gov/pubmed/1035093010:22
kanzurehm maybe it broke10:28
JayDuggerNo worries. I have enough other papers to read.10:36
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chris_99nmz787, you about?10:38
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kanzurehuh, the market is much larger than i anticipated http://en.wikipedia.org/wiki/Lists_of_volcanoes10:49
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ParahSailinmarket?11:00
kanzurevolcano real estate11:01
nmz787chris_99: hi11:10
chris_99hey, i was just wondering what power co2 laser you used for the PCBs you mentiond a while back11:10
chris_99with the black paint11:10
nmz787mmm11:12
nmz787it was one of those Las Vegas converted from chinese lasers11:12
chris_99was it a chinese laser cutter you mean11:12
chris_99one of the small ones11:13
nmz787ahh http://fslaser.com/11:13
nmz787I think it was a 40W11:13
nmz787a 25W would likely work though11:13
nmz787as the point was just to convert the paint to ash11:13
chris_99gotcha that's about normal for the mini cutters11:13
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nmz787can anyone in here get me this? http://www.tandfonline.com/doi/abs/10.1080/07328319108046457#.U6Xg7vldXEn12:45
nmz787paperbot: http://www.tandfonline.com/doi/abs/10.1080/07328319108046457#.U6Xg7vldXEn12:45
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/dc3634b8805ca546fadcae1fc60748d1.txt12:45
nmz787i thought so12:45
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heathi don't get the point of ionic still13:25
heathand i don't understand why app.js is converted to an html file by cordova13:25
* heath is, as you can tell, a fantastic mobile dev13:25
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kanzurejoepie91_: hi16:14
nmz787kanzure: in the abi 391 manual  on pg 230 they actually show exploded views16:21
nmz787kanzure: i can see Zilog on pg 23316:22
kanzureyes?16:30
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kanzureso let's see..17:02
kanzure.wa 1920 * 1080 * 3017:02
kanzureassuming 30 bp per oligo17:02
yoleaux1920×1080×30: 62208000; Scientific notation: 6.2208 × 10⁷; Number name: 62 million 208 thousand; Number line: http://is.gd/ybCmtC; Number length: 8 decimal digits17:02
kanzureis 30 bp enough to do correct assembly of 2 million strands?17:02
kanzureneeds 7 bp on either end, right?17:05
kanzure*both ends17:05
jrayhawk_speaking of which, the huell howser volcano house apparently went off the market in 201217:08
jrayhawk_a bummer for all aspiring supervillains17:09
kanzuregoogle has it all wrong, people don't want to be in san francisco17:09
kanzurethey want to be living in a volcano17:10
nmz787it seems like valve muxing would save significant reagent waste over a constant flow system17:12
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kanzureor you could just use less flow in the first place17:18
kanzureinstead of using valves17:18
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ParahSailinligating 30bp is just gonna make smear17:36
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kanzurehow long17:37
kanzuregibson assembly requires 20-40 bp overlaps, hm17:38
kanzureseems a little high17:38
dingois there a method i can use in setup.py to test whether or not the environment is capable of building C extensions to python? so that I could provide optional install_requires packages only if it passes such tests?18:19
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kanzuredingo: you can extend some of the commands (like install) to do things18:21
kanzuredingo: here's a messy example, http://github.com/kanzure/python-brlcad/tree/master/setup.py18:21
kanzurein particular, command_subclass.run = modified_run18:21
dingosure, sure, i know that one18:22
kanzureand CustomInstallCommand18:22
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dingobut is there some way to ask, "Can I build a C extension for python?" -- other than, I suppose, like a ./configure script -- actually trying it18:22
kanzurewell, i would test in a before hook step, and then filter the list of requirements to exclude things that are c extensions18:22
kanzureso, the actual dependencies for c extensions are often not formally specified18:23
kanzurei believe the only requirement is $cc or something like that (for which compiler to use), and then whatever header flies that code might demand18:23
kanzuredunno if it's literally $cc or $CXXCOMPILERFLAG or w/e18:23
dingowell some users will tell me, they have cc -- but they didn't have "python-dev" package on debian or some such, missing Python.h, etc.18:23
dingoso testing for `which cc` isn't sufficient alone18:24
kanzurepkg-config? heh18:24
dingoyeah, i think it will be necessary to actually compile a mini test extension -- and only if it succeeds, then add 'paramiko' and 'bcrypt' to install_requires18:25
dingomy epic telnet bbs project now has ssh support, and has always had optional blowfish encryption of passwords supported18:25
kanzureparamiko has c extension requirements?18:25
dingoyeah, it depends on PyCrypto, which does18:26
kanzureaha18:26
kanzurepython packaging su18:26
kanzure*sux18:26
dingoi know... you're telling me18:26
kanzureif you can manage it, you should campaign to replace everything with debian packaging18:26
dingoi'm the defacto PyInstaller for windows expert at work now18:26
kanzurepyinstaller still hehe18:26
gradstudentbotShe keeps talking about her Nature paper, but she was only third author.18:27
dingoI think my project may have made it to ArchLinux18:27
dingobut thats any earlier pure python version anyway18:27
kanzurewhy did we use python packages anyway?18:27
kanzurewe really should have just used .deb's or .rpm's18:27
dingoyou talking about at my job?18:28
kanzureoh right, osx development..18:28
kanzureyes18:28
dingowell we do use both .deb and .rpm for the final mega-project18:28
kanzurei keep forgetting about the osx developers. that makes things problematic.18:28
kanzuresure18:28
kanzurebut for the python portions too18:28
dingowell theres a windows portion now too, you know18:28
kanzurela la la la not listening18:28
dingoi just helped finish windows secure direct migration this week18:28
dingowindows pe boots up, does the migraiton18:29
kanzureglad to hear there's progress18:29
dingohence the need for the PyInstaller, we have a cli.exe18:29
gradstudentbotWow, that would be a great sample to add to my collection.18:30
dingomanagement is talking about "cli.exe" like its some fucking magical thing, they don't even know what it is or what it stands for, or that its just 2 logical lines of python code18:30
kanzurehaha18:30
kanzuredon't tell them it's 2 lines, they won't understand that there was other work18:30
dingoi just regret not duplicating it to 'collector.exe' and 'target_worker.exe', they're all mega-confused about how cli.exe works in both sides of the equation18:31
dingoits an 11mb exe :)18:31
dingoi'm really trying to polish this turd up before i leave em18:32
kanzurei can see why they're confused, since they are probalby thinking of web applications18:33
kanzureand not desktop/server applications18:33
kanzureor applications that have network communication aspects beyond what it used to be18:34
dingoi got a new boss between our former one and myself ... he's a scientologist... nuff said ...18:34
kanzurethat's hilarious that they reward you by pushing you further down the ladder18:35
kanzurewhen you leave, you should try the "do as little as humanly possible" philosophy18:35
kanzureand the "give wrong answers" "follow up at the wrong hours" etc18:35
dingoyeah im going to go like lin18:35
kanzurethink of it as an experiment18:35
kanzurestart sending thoughtful emails up the chain (bypass at least 2-3 bosses)18:36
dingooh there's that game where you reply to every e-mail by including one more person18:36
kanzureoh yeah, and you win when the ceo gets included or something?18:37
dingoyup18:37
kanzurejust curious.. how long does the unit test suite take these days? and how many tests18:38
dingowe've done pretty good.. let me see18:38
dingo392 tests in 9 seconds -- for engine, 273 in 4 seconds in phore18:40
kanzurenot bad at all18:40
dingoand theres a windows project with hundreds of tests i'm not really in the mood to boot up18:40
kanzurecould be way worse18:40
dingoevery bug or feature i author comes with tests -- there are of course those amatures who shit all over the codebase still, can't help them18:41
kanzurei've been having that problem elsewhere18:41
kanzurei can catch most stuff in code review,18:41
dingothe windows project even rejects the build if test coverage goes under 90%18:41
kanzurebut it's really hard to convince people to totally redo their work18:41
kanzurewithout rewriting it for them18:41
dingoit also rejects build for any pyflakes and pylint issues18:41
dingoso its very pure and clean18:41
dingoit also means you can't throw 100 TODO items18:42
dingoi swear.. some of these kids.. can't write 5 lines of code without saying "TODO: I should have done this better, but i don't know how"18:42
kanzure# TODO: correct for gravitational constant once humanity figures out the value18:42
dingoif it weren't for these two other people, i would have already left -- i don't feel so much like its a losing battle18:44
dingoi like some of the folk -- but i would fire the lot of them, they cost more than they help when they write difficult to maintain code18:44
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kanzurecan't fire me if i'm already gone :)18:45
kanzurehehe18:45
dingoi earnestly beleive just 3 or 4 great developers can do a colossal amount of work -- history shows C compilers, unix, all kinds of mega projects that were completed with just a handful of people18:45
kanzureyup, absolutely18:45
kanzurefor every additional programmer added to a project, at least one year of your life expectancy is removed18:46
dingoi told the new scientologist manager this idea, and he replied, "Thats only true if your company is started out of a garage -- thats not true in the *real world*"18:46
kanzuregood thing my garage isn't part of reality18:47
dingoi just dropped the subject, he's a former java developer, he probobly only knows mega-corperation software houses18:47
caternlol, "the real world"18:48
dingothat VV who sits by me has gone an entire 2 weeks without submitting a single thing to review, not a single thing, yet his editor is open all day18:48
dingoi submit on average 1 thing a day to review. some days my diffs are over 1,500 lines18:48
catern"that's only true if you're not employed by a company that pays people to interfere with you"18:48
dingoi bought a chess clock, a right and left side-mechanical timer, you know?18:49
dingoand i timed actual programming vs. bullshit distractions18:49
dingoaverage actual programming time between 9 and 5? about 30 minutes to 1 hour18:49
kanzurefor yourself?18:49
kanzurei wouldn't be surprised18:49
dingoso now i just work in the evenings when everybody's gone, i can get in at least 4 hours of programming that way, sometimes the full 6 i feel i'm entitled to have18:49
kanzurewould you believe me if i told you i was watching movies the whole time i was coding18:50
dingoi come in just before lunch, hehe18:50
dingoyou got a warped attention span, don't tell me your process18:50
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dingoits inhuman18:50
gradstudentbotYou know, I'd like to biopsy that butt.18:51
kanzureoffice life is weird anyway18:52
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kanzureooh, how about we paint this on the side of the synthesizer:20:38
kanzurehttp://www.clipartbest.com/cliparts/Rcd/K4A/RcdK4Akgi.jpeg20:38
kanzureor if we want something more involved, http://ih3.redbubble.net/image.15027782.1633/fc,550x550,asphalt.u1.jpg20:39
kanzuresafe enough yet? http://rmc205a.files.wordpress.com/2013/04/biohazard-suits.jpg20:42
kanzuredamn how about this one http://thumb9.shutterstock.com/display_pic_with_logo/1059320/138565472/stock-vector-gas-mask-stencil-isolated-over-tatto-element-138565472.jpg20:43
nmz787heh20:49
nmz787more work???20:49
nmz787paint could foul the optics20:49
nmz787;)20:49
kanzurewell, we could have someone else do it, dunno if it matters20:52
kanzurei think most of the panels are not functionally relevant20:52
kanzureso we could just ship one to some art dude20:52
kanzuredoesn't have to be *paint* either20:53
kanzurejrayhawk_: maybe mike would be up to do a thing?21:00
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joepie91_kanzure: yes, working on PDF stuffs :P22:33
kanzurecoolio22:33
joepie91_reading pdf.js codebase to understand exactly where to hook stuff in22:34
joepie91_seems well-engineered, though I encountered some major WTFs in the colorspace department, but that's probably just not code used in production yet22:35
joepie91_(stuff like a function that supposedly returns a boolean based on input data, but is hardcoded to return false, etc.)22:35
kanzurelolz "Oligos produced from microarrays are 2-4 orders of magnitude cheaper than column-based oligos, with costs ranging from $0.00001 - 0.001 per nucleotide."22:36
kanzureoh gen9bio.com is doing inkjet printing of phosphoramidite reagents22:38
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kanzurethey are doing ~10,000 oligos per pool22:39
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