2014-08-10.log

--- Log opened Sun Aug 10 00:00:30 2014
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kyknos_paperbot: http://www.sciencedirect.com/science/article/pii/S002228366880012901:42
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/d1a31dad420dfe2b63d22bc489e0c236.txt01:42
kyknos_paperbot: http://www.sciencedirect.com/science/article/pii/002228367090004501:42
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/70319e776ddd25010374a4dbbc69d84f.txt01:42
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kyknos_paperbot: http://www.sciencemag.org/content/147/3664/1462.short02:22
paperbothttp://libgen.org/scimag/get.php?doi=10.1126%2Fscience.147.3664.146202:22
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kyknos_paperbot: http://link.springer.com/article/10.1007/s10739-009-9184-102:43
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/A%20New%20Insight%20into%20Sangers%20Development%20of%20Sequencing%3A%20From%20Proteins%20to%20DNA%2C%2019431977.pdf02:45
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kyknos_paperbot: http://www.nature.com/nature/journal/v485/n7397/abs/nature11117.html03:33
paperbothttp://libgen.org/scimag/get.php?doi=10.1038%2Fnature1111703:33
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kyknospaperbot, http://onlinelibrary.wiley.com/doi/10.1111/mec.12269/abstract08:08
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/a64d08d68b04488e19d32090d347fb37.txt08:08
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kanzureugh i don't know what he wants me to do with this https://github.com/raj12lnm/OpenNurbs-Python08:38
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ParahSailin2146435072 looks like a special number10:20
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ParahSailinthey went retard here https://github.com/rcallahan/UNAFold/blob/c870c55552082c94ae51fbe94cc0e2ff86b7bd4c/src/hybrid-min.c#L110310:35
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nshlolpaperbot, pap10:57
nshlolpaperbot, http://link.springer.com/chapter/10.1007%2F978-3-642-31912-9_1610:57
gradstudentbotUgh, my clinical trial isn't going so well.10:57
nshlolpaperbot, http://dl.acm.org/citation.cfm?id=236344210:57
paperbothttp://libgen.org/scimag/get.php?doi=10.1007%2F978-3-642-31912-9_1610:57
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/f68b85d8404b29679d352876504abab6.txt10:57
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kanzurehttps://github.com/FeepingCreature/autofab/blob/master/recipes.txt11:10
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dpkkanzure: pm?11:30
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kanzureok11:34
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dingohttp://www.washingtonpost.com/blogs/the-switch/wp/2014/08/06/the-man-who-can-see-the-internet/ <-irssi and python supybot featured on washington post11:51
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kanzurethe future sure does look a lot like 199712:06
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archelspaperbot: http://link.springer.com/chapter/10.1007%2F978-1-4614-2383-6_513:05
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/cf5a4ba5c5159d1fb96c0b753c7c84d7.txt13:06
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kanzure.title http://3dprototypesandmodels.com.au/blog-2/13:50
yoleauxLow-cost 3D printers and crowdfunding suicide13:50
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kanzurehah "Stretch goals are a quadruple-blow on their bottom line. Kickstarter takes more and more money yet the profit on each printer is the same. The additions themselves cost more money, reducing the profit margin further on each printer and now the printer will take longer to make, using even more funds."14:01
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heathhttp://12factor.net/14:24
heath"The twelve-factor app is a methodology for building software-as-a-service apps"14:24
kanzurefirst one is silly: why use only one repository?14:26
kanzure#3 is also silly: the environment is not persistent, where are you going to develop your config?14:26
kanzure#7 is dumb, everything is already using ports almost everywhere14:27
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heathi had never heard of it14:28
heathreferenced in this guy jabbering: https://www.youtube.com/watch?v=f1hSvfDIfbo14:29
heathBaron Schwartz: MySQL, SQL, NoSQL, and Open Source in 2014 and Beyond14:29
heathhttps://www.youtube.com/watch?v=BUCZJWo9MZo14:31
heathman and computer, from IBM (1965)14:31
heathlist of cheap fpgas: http://www.joelw.id.au/FPGA/CheapFPGADevelopmentBoards14:33
heathdoesn't mention the cypress boards though14:33
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heathyou can get them for less than $514:33
heathhttp://www.cypress.com/?mpn=CY7C65211-24LTXI14:33
heathhttp://www.cypress.com/?rID=9214614:34
chris_99i don't think the psoc4 is an fpga?14:35
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heathoh yeah, it offers cpld instead of fpga14:44
heathhttp://www.cypress.com/?docID=4323214:47
* heath walks away from the IRCs for a bit14:47
chris_99oh neat14:48
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kanzure.title http://www.nature.com/news/organic-synthesis-the-robo-chemist-1.1566117:19
yoleauxOrganic synthesis: The robo-chemist17:19
kanzurehmm "A British project called Dial-a-Molecule is laying the groundwork. Led by Whitby, the £700,000 (US$1.2-million) project began in 2010 and currently runs until May 2015. So far, it has mostly focused on working out what components the machine would need, and building a collaboration of more than 450 researchers and 60 companies to help work on the idea."17:20
thundaraAccompanying criticisms: http://pipeline.corante.com/archives/2014/08/07/the_synthesis_machine.php ^^17:20
kanzure"Jamison, for example, is working on flow chemistry at the Novartis–MIT Center for Continuous Manufacturing in Cambridge, and he is part of a team that last year reported1 the first end-to-end, completely continuous synthesis and formulation of a pharmaceutical: aliskiren hemifumarate, a treatment for high blood pressure. Jamison and his colleagues built a machine (now dismantled) that was more than 7 metres long, and about 2.5 metres high ...17:21
kanzure... and deep. “It took four years of 'everything that can go wrong, will go wrong',” says Bernhardt Trout, head of the MIT centre and leader of the project. After a lot of trial and error, he says, the researchers got to the point at which they merely had to flip the switch and feed in fresh drums of solvent and raw materials. The machine would hum like a large air-conditioning unit as stirrers whipped up chemicals, pumps whirred, ...17:21
kanzure... filtration units dripped and squeezed, and a screw conveyer pushed solids through a 2-metre drying tube to be injection-moulded. Finally, after 14 operations and 47 hours, finished tablets dropped down a chute. Batch synthesis would have required 21 operations over 300 hours."17:21
kanzurehe is really boring, "My guess is that we're going to see many years of machines that can do some things in very well-defined areas, but which will prove useless (or worse) if you try to push them into unknown territory. And unknown territory is what it's all about."17:22
kanzureno, unknown territory is not what it's "all" about..17:22
kanzure"The following decade, Corey created software called LHASA (Logic and Heuristics Applied to Synthetic Analysis), which could use these rules to suggest sequences of steps towards a synthesis2. But LHASA and its successors have never taken off, says Grzybowski: either the databases have included too few reactions and too many errors, or the algorithms have not properly assessed whether proposed reactions are compatible with all functional ...17:23
kanzure... groups in the molecule."17:23
kanzuremy hardest problem has been getting access to the relevant databases on sane licensing terms17:23
kanzureit's pretty easy to cull out errorful results if there are 10^60 targets17:24
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kanzure"Grzybowski has spent the past decade building a system called Chematica to address those problems. He started by creating a searchable network of about 6 million organic compounds, connected by a similar number of reactions, drawn from one of the main databases behind Reaxys. "17:24
kanzureexcept reaxys will bleed you dry so why would you bother17:24
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kanzure"Eli Lily actually has something really close to this. It's a completely automated organic synthesis machine. I don't know how many they have but I saw the one in the Indianapolis lab. I don't think people are supposed to know about it though."20:04
kanzure"I just want a robot to run chromatographic columns for me, honestly" huh?20:05
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