2014-08-11.log

--- Log opened Mon Aug 11 00:00:31 2014
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superkuhpaperbot: http://scitation.aip.org/content/aip/journal/apl/96/10/10.1063/1.335743003:34
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/An%20efficient%2C%20low%20profile%2C%20electrically%20small%2C%20three-dimensional%2C%20very%20high%20frequency%20magnetic%20EZ%20antenna.txt03:34
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kanzurehmm06:47
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kanzurei still think this whole page is embarrassing https://www.transcriptic.com/blog/2014/07/15/transcriptic-platform.html07:03
kanzureclearly he has no copywriter07:04
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kyknospaperbot, http://www.sciencedirect.com/science/article/pii/002228367590213207:31
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/2a6f71702219b367087ce6a5974ff38.txt07:31
kyknos:(07:31
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ParahSailinkanzure: i know of a ga2x thats gonna go real cheap09:31
kanzurehow much does it cost to operate09:31
ParahSailinhaha yeah09:31
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ParahSailinso, if you want to be a haxor and make your own flow cells, it could be cheap09:31
ParahSailinotherwise, scrap09:31
kanzureuseful scrap?09:32
ParahSailinyou could do a teardown09:32
ParahSailini dunno09:32
ParahSailinmaybe not easily repurposed09:32
kanzurewould the teardown actually be useful09:33
kanzurewhat's in there that isn't already known09:33
ParahSailinflow cell recycling is probably the most useful thing you could do09:34
ParahSailinthey are just little glass plates that illumina does magic on09:34
ParahSailinand thats your consumable cost09:38
ParahSailini imagine the microscope scanner is a decent thing also, if you just wanted to take it apart09:39
nmz787i'll dp09:40
nmz787o09:40
nmz787i'll do it!09:40
nmz787the teardown09:40
nmz787da fuck, it's hotter in portland than vegas today09:41
nmz787109 there supposedly09:42
nmz787not having AC might be backfiring when i grt home09:42
ParahSailinit looks like theyll probably ask 10-20+ for it, looking at ebay09:42
kanzure$20k?09:43
nmz787hmm09:43
gradstudentbotI'll be at the microscope.09:43
nmz787a lot for a teardown, unless we could resell or get to use it09:43
nmz787i wouldn't be opposed to driving it somewhere,e.g. the bay09:44
nmz787wit mah truck09:44
ParahSailinregenerating flow cells is a worthy project09:44
ParahSailinif illumina can turn blank glass into flow cell, then so can you09:44
nmz787what would consumable cost be with /without regen?09:45
ParahSailinits like 5k09:45
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ParahSailincompared to like 800 for nextseq flowcell09:45
nmz787so $5k vs $5.8k?09:46
gradstudentbotWhere are the hot plates?09:47
ParahSailin5k vs 0.8k, yes09:47
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nmz787so the flow cell itself is $4.2k then09:48
nmz787pricey glass09:49
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ParahSailinoh, no the flow cell is like 5k itself09:49
ParahSailinthe reagent vials are extra, but small cost compared to flow cell09:49
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nmz787have y'all seen the nsa playset?09:53
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chris_99what's that09:54
nmz787saw some cool talks on diff projects that fall under the term09:54
nmz787using vga/hdmi/dvi i2c for exfiltration via custom bios malware and a gsm dongle09:55
nmz787and gsm cracking using rainbow tables and sdr09:55
nmz787and usb to pcie/thunderbolt exfiltration09:56
chris_99you can capture gsm apparently with an rtlsdr09:56
nmz787(plx card/chips)09:56
nmz787yep09:56
nmz787even some cheap cingular cell phones09:56
chris_99what do you mean by usb --> pcie09:56
nmz787that you load custom firmware09:56
nmz787the plx chip does it09:57
nmz787it is a usb to pcie bridge09:57
nmz787you can set up anf vendor/product id09:57
nmz787any09:57
chris_99you can convert usb to pcie?!09:57
nmz787yes09:57
nmz787then start dumping memory09:57
nmz787via dma09:57
chris_99but usb doesn't give dma access09:58
nmz787pcie does09:58
chris_99yeah but how would that work09:58
nmz787the chip is a bridge09:58
chris_99it can't be proper dma09:58
chris_99then09:58
nmz787itbdoes09:58
nmz787it just sends the rigt packets to pcie bus09:58
nmz787which were crafted and sent to the chip over usb09:59
nmz787think a thunderbolt expabder09:59
chris_99i can't see how that'd work tbh, do you have more info09:59
nmz787expander09:59
chris_99like slides09:59
nmz787sure09:59
nmz787nsa playset pcie usb joe fitz09:59
nmz787google that09:59
chris_99cheers09:59
nmz787plx usb pcie09:59
nmz787http://www.plxtech.com/products/expresslane/bridges10:00
nmz787he had a box made to look like thunderbolt to vga, but was actually just cosmetic10:01
nmz787to trick ppl into plugging in the cable10:01
chris_99hmm i still haven't managed to grab the slides, it's a defcon talk?10:04
nmz787ya10:06
nmz787maybe not up yet10:06
chris_99mmm it sounds very intriguing10:07
chris_99i can only think the device driver windoze has for this pcie bridge thing, acts as a pass through10:07
chris_99to memory10:07
gradstudentbotOh man, that's a great scrabble word. I got to write that down.10:10
nmz787nope10:15
nmz787pcie needs no drivers10:16
nmz787afaik from the talk10:16
nmz787at least as far as the bus is concerned10:16
chris_99hmmm, so in certain cases you're saying USB can provide DMA10:18
nmz787with a bridge, yes10:20
chris_99intriguing10:20
nmz787i can't remember the driver part of it10:20
nmz787there was something about osx being vulberable by default but being able to disable it10:21
nmz787vtx maybe10:21
chris_99you don't mean vt-d10:22
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nmz787can't remember10:27
nmz787apparently there is some linux source that specifically mentions disabling some endpoints on hot-plug or something10:27
nmz787for security reasons10:27
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nmz787https://github.com/NSAPlayset/SLOTSCREAMER10:30
chris_99sweeet10:32
chris_99thanks10:32
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delinquentmekanzure, you around?10:39
delinquentmeNeeds opinions10:39
nmz787abt wat?10:40
kanzurespeak10:40
delinquentmeI'm working w a dude on some cloud infrastructure for sci compute .  I don't think this is a differentiated market offering.10:40
kanzureit is not10:40
kanzureeven ec2 offers free time for academic projects10:41
delinquentmehis current interest is "making super computation easy"10:41
kanzureabout $15k grants, approved in like a week or two10:41
delinquentmeOh realllly?10:41
delinquentmelink?10:41
kanzurehttp://aws.amazon.com/education/aws-in-education-research-grants/10:41
delinquentmeSo i keep pushing that he / we need to differentiate more10:42
delinquentmeI REALLY like hooking up with hardware manufacturers to provide compute for their machines10:42
delinquentmespecifically machines OTHER than sequencers10:42
delinquentmebut really anything that requires massive spikes in processing could work ... but in talking to a few people in the space ... they're not really compute constrained10:43
kanzurenope10:43
delinquentmeIE if they need it they've got it in house10:43
kanzureyep10:43
delinquentmeand I keep telling him that a company like cloudera could TOTALLY do this work ... and both have pre-existing scale and tons of money10:44
delinquentmehe seems to think they'd turn down a contract to do scientific simulations10:44
delinquentme( bad sign )10:45
kanzuresell docker containers to pharma companies10:45
delinquentmepreconfigured docer containers?10:45
delinquentmedocker *10:45
kanzurei don't know10:45
kanzurejust go in yelling about openstack and repeatability or something10:46
delinquentmehahahaha10:46
delinquentme,310:46
delinquentmekanz sometimes ihate you but sometimes you're the best10:46
kanzuretell them it's fda approved10:49
delinquentmebusiness kinds would be impressed. engineers would try to stab me10:49
kanzurewell it's shank or be shanked10:50
delinquentmeI need a deploy hook / callback post instancing a # of servers ... any idea if salt supports this kanzy ?10:52
kanzuresorry but i'm up to my horns trying to figure out what the fuck a salt pillar is10:52
nmz787a stalctite10:53
nmz787?10:53
nmz787or atalagmite?10:53
nmz787stalagmite10:53
nmz787ugh10:53
kanzurehttp://docs.saltstack.com/en/latest/topics/tutorials/pillar.html10:53
kanzurehttp://docs.saltstack.com/en/latest/topics/pillar/index.html10:53
delinquentmekanzure, best use case is configuring all the users on a server along w dir permissions10:54
kanzurebut why can't i do that like normal10:54
delinquentmeyou're currently using salt too?10:54
kanzurei am pretending to use salt10:54
delinquentmeyou mean writing it into a script or by hand?10:55
delinquentmeyou can.  But the salt markup for it is hella simple10:55
kanzureyes, like whenever my packages get installed10:55
delinquentmelike HTML is more complex than the salt pillar markup10:55
kanzurefor now i think i'm sticking with consul (or etcd)10:55
kanzurealready have consul working, i don't see a strong reason to switch to salt10:56
gradstudentbotYou know they keep the mice in better conditions than us.10:56
delinquentmesometimes its good to be salty though10:56
kanzurewhat are you, a pristine cracker10:56
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nmz787chris_99 vt-d10:58
nmz787not vtx10:58
chris_99yeah i've heard of that one10:58
chris_99well this sounds all v. interesting10:59
chris_99wouldn't mind trying it out10:59
chris_99i bought a pci-e fpga10:59
chris_99card10:59
chris_99to hack my memory10:59
gradstudentbotWhere did you put the revisions to the paper?11:00
nmz787he was selling the cards for $100 with the eeprom flashed (though that is trivisl to do)11:02
nmz787trivial11:02
chris_99i noticed that company sells dev kits11:03
chris_99are they essentially those11:03
nmz787yeah11:03
nmz787exactly11:03
nmz787but something about neede11:03
nmz787maybe needing to buy in bulk or be a biz11:03
chris_99ah11:04
nmz787not sure on that11:04
nmz787maybe he just bought a lot in case he broke them11:04
nmz787or anticipating selling11:04
chris_99heh11:04
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kanzureis this the original openbci project or is it a different one? http://openbci.com/index.php/downloads12:21
kanzurehttps://github.com/caru/StenoPCB https://github.com/caru/Stenoboard http://www.thingiverse.com/thing:411189 http://utopen.com/stenoboard-kits/21-stenoboard-11-kit.html12:22
kanzurestalk: Emanuele Caruso <emanuele.caruso@gmail.com>12:22
kanzure"Second, I am curious if you could describe the difference between the traditional single-surface steno keyboard and your fancypants split steno keyboard. Would you say you type faster with it? More accurately? is it just more comfortable?"12:24
kanzure"The main difference is that I'm able to type for 8 hours at a stretch with no breaks at >200 wpm without getting muscle pain or fatigue. But that's what you might call industrial use. If you find yourself getting RSI problems, by all means switch to the ergonomic keyboard. If you're feeling okay, you can probably keep the single plane keyboard for now. Though there's also the StenoBoard, which is only $300 for an easily assembled kit, if you ...12:24
kanzure... want a second split keyboard as a backup."12:24
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kanzurehttps://github.com/progrium/registrator "A docker-consul bridge that automatically registers containers with published ports as consul services. As docker containers are started, published ports are inspected and the container gets registered as a service in consul across the cluster. As containers stop, the services are deregistered. If the default service descriptions are unsuitable, you can customize them with environment variables on the ...13:46
kanzure... container."13:46
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ParahSailinkanzure: so they might be willing to get rid of that gaiix for 10k or less14:01
kanzureugh14:01
kanzurepass14:01
ParahSailinheh14:01
archelshttps://ultracortex.com/opencart/index.php?route=product/product&product_id=5214:06
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archels"we'll just buy a 24-bit ADC and put it on our board somewhere. that shou;d give us 24 effective bits of resolution!"14:06
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chris_99heh14:08
chris_99nmz787, you seen this http://hackaday.io/project/956-ChipWhisperer%E2%84%A2%3A-Security-Research14:08
chris_99looks v. cool14:09
kanzurescore: 2, insightful14:14
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poppingtoniccool14:18
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kanzureParahSailin: hahaha14:29
kanzure.title https://news.ycombinator.com/item?id=816486014:29
yoleauxGlowing Plant Is One of Y Combinator’s First Biotech Startups14:29
kanzurehow disappointing14:30
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ParahSailinwhat, you think pg is doing it for money at this point? its about cred and hype14:34
kanzurethere's no cred there14:37
kanzurelike, way to alienate your hackers14:38
ParahSailinthat was the biggest indiestarter in history14:38
kanzurehuh?14:38
kanzurekickstarter projects have raised like $2M and higher14:38
ParahSailinok i just made that up14:38
kanzurenice try14:38
bbrittainT_T14:39
kanzure"our cred is being able to lie extremely well"14:39
bbrittainT_T14:39
bbrittainwhy YC, WHY14:39
kanzurebecause they call themselves "genome compiler"14:39
kanzure"so it's like, really computing or something!"14:39
bbrittain"built on adobe air" - back away slowly, maybe it didn't see you.14:40
kanzureyeah no kidding14:40
kanzurewhat a pile of shit14:40
kanzurei should send in a yc application that's just me and someone's dog14:41
bbrittainbut... ginkgo is cool. :)14:41
kanzurehttp://i0.kym-cdn.com/photos/images/original/000/234/765/b7e.jpg14:41
kanzurewrong! gingko is not cool. wtf?14:42
kanzureit's like everyone has been living under a fucking rock14:42
bbrittainkanzure: oh why do you think not?14:42
kanzurethey sort of had an anti-kanzure campaign for a while14:42
kanzureso that wasn't cool14:42
bbrittainelaborate?14:42
kanzureit's just more of the igem snobbery14:42
* kanzure checks logs14:43
kanzure17:38 <@kanzure> i think mac cowell made gingko's website14:43
kanzure17:38 <@kanzure> http://cis-action.com/ginkgo/14:43
kanzure18:14 < delinquentme> waiiiitt what about ginko?14:43
kanzure18:14 < delinquentme> i sent them an email14:43
kanzure18:14 < delinquentme> and they were awesomely dismissive14:43
kanzure18:14 < yashgaroth> circlejerking, more accurately14:43
kanzure18:14 <@kanzure> yeah ginkgo has a history of being made up of elitist people14:43
kanzure18:15 <@kanzure> to be fair, i think they all hate me because of my email spam from 2007-200814:44
kanzure18:15 <@kanzure> they even made up up a thing.. "bishslapped"14:44
kanzure18:15 < yashgaroth> maybe once you get your phd from mit they'll open up14:44
kanzure19:25 < cluckj> ginkgo bioworks needs seed funding? wut14:44
kanzure19:30 < kanzure> my thoughts exactly14:44
kanzure19:33 < cluckj> haven't they engineered a bacteria to print money already?14:44
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kanzurehttp://web.archive.org/web/20081007133549/http://cis-action.com/ginkgo/14:45
ParahSailina bacteria to mine bitcoin14:45
chris_99heh14:45
kanzureyes and here's my phd14:45
thundaraSo...a company based around the same idea as openwetware?...14:45
kanzureit's scribbled in crayon and signed by the king of slashdot14:45
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kanzureopenwetware.org was setup by the same people14:46
kanzureso that doesn't really count14:46
kanzurewell, openwetware.org was more like drew endy i guess14:46
kanzureso not the same /precise/ people. but down the hall.14:46
bbrittainginkgo doesn't need "seed funding" in the traditional sense, they are starting to expand now that they have core functioning products. the've never taken funding (that wasn't grants before)14:46
thundaraDoes he still work on stuff?14:46
thundarakanzure: ginkgo == stanford?14:47
bbrittainginkgo== MIT14:47
kanzurei'm still strongly suspicious of this14:47
kanzurei mean, they accepted the fucking glowing plant scam14:47
kanzureso what does that say about also accepting ginkgo14:47
bbrittainoh, YC. yea, thats stupid14:47
thundaraIsn't that just GFP + constituitive promoter?...14:48
bbrittainventure capital should never be used as a way to validate a company... although it often is14:48
chris_99no14:48
kanzurebbrittain: that's not the problem here14:48
thundaraSec, getting caught up on scrollback >_>14:48
kanzurebbrittain: i mean, it might be a more pervasive problem, but no matter how much venture funding you raise, you still lied about your glowing poops14:48
bbrittainwell, you mean for the glowing plant... yea. it's ridiculous.14:49
gradstudentbotWe simply don't do enough titrations in my lab.14:49
kanzuregradstudentbot: do you want to submit to ycombinator with me and http://i0.kym-cdn.com/photos/images/original/000/234/765/b7e.jpg ?14:50
gradstudentbotI'm making a flamingo cell culture, but first I need to capture a flamingo, are you in?14:50
kanzurewhat14:50
chris_99haha14:50
bbrittainkanzure: so wait, is the only reason you dislike ginkgo because they are "igem snobs"?14:52
kanzurethere was another reason but i forget to be honest14:53
kanzuretom knight got angry because he was outed as a top poster14:55
thundaraWhat's bad about igem? (I don't know the program personally)14:55
kanzurethey are hostile to anything that isn't biobricks, iirc14:56
kanzurealso they used to be hostile to non-academic groups, but have recently allowed them to enter with 2x entrance fees or something14:56
bbrittainkanzure: as a "top poster" to what?14:57
thundaraNon-BB not allowed for their projects?14:57
kanzurebbrittain: https://groups.google.com/group/diybio14:57
bbrittainoh14:57
kanzurei wish i could find his hilarious "fairwell" email15:00
kanzurewhere he raised the middle finger to everyone15:00
chris_99what's top poster mean?15:01
kanzurehttps://groups.google.com/d/msg/diybio/LdVG3WHOizI/63DQsmZ62acJ15:01
thundara> My startup, DomainSquatters.com15:02
bbrittainwait, where is his?15:03
kanzurehmm15:03
kanzurelooking15:05
kanzurehttps://groups.google.com/forum/#!msg/diybio/IzQtsi22Lws/XcBix-l7QOsJ15:05
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bbrittainuhh. that doesn't look so bad to me. DIYbio is full of junk15:10
kanzurehaha15:11
kanzureyeah it's not bad rally15:11
kanzure*really15:11
kanzurejust some hard feelings :)15:12
gradstudentbotI am completely satisfied with the size of my bench space.15:12
nmz787chris_99 ya seen it15:12
chris_99the RPi demo of it seems nifty15:13
nmz787my gf's lab had one i think15:13
nmz787has15:13
nmz787kanzure airdroid was a major disappointment15:13
nmz787did. not. help.15:13
kanzureouch15:14
nmz787why the hell my phone requires mobile data to start a hotspot is beyond me15:14
nmz787were the engineers actually retarded monkeys?15:14
kanzureyes15:14
nmz787:/15:14
nmz787i may have to convert to apple15:15
bbrittainnmz787--15:16
bbrittain>_<15:16
bbrittainwhy15:16
bbrittainwhat do you need?15:16
nmz787android pisses me off all the time15:17
nmz787drivedroid also failed15:17
nmz787list is kinda long tio fingertype now15:18
nmz787but i guess it's just normal shit to me, maybe advanced to the normal person15:18
bbrittainoh, I see your problem:  it's because you are trying to use a phone like it's a real device.15:18
bbrittainit's not.15:18
bbrittain:P15:18
kanzure"hold on a sec let me reboot my phone"15:18
nmz787i havr he htc one m8 and it's the flgagship device this year and its junk15:18
nmz787removed optical stabilization for some depth sensing canera that i dont care about15:19
nmz787cant do mesh15:19
kanzurei think a lot of the telephony/gsm/cdma/wifi stuff would be lots better if there was an open source or at least accessible firmware for those aspects15:19
nmz787easily at least, def not out of box15:19
nmz787cant send files via bluetooth to chromebook15:19
kanzurewere you able to do that before?15:20
nmz787couldnt get chromebook to work with drivedroid15:20
nmz787idk didnt have chromebook15:20
nmz787but my htc evo 4g (2010 i believe) had a much nicer camera15:20
kanzurechris_99: it's just email netiquette stuff :p15:21
nmz787ahh, what else15:21
chris_99kanzure, ah15:21
nmz787flashlight doesnt work on low battery15:21
kanzurei am sure that camera variance is large enough to be noticable, i doubt that phones are competing on the performance of their cameras overall15:21
nmz787earlier i was listening to music and snapping cam pics caused music to get choppy15:21
kanzurestill having trouble figuring out if this stuff didn't happen to you before15:22
nmz787they added another cam to this tho15:22
nmz787so they were thinking of it15:22
nmz787gtg15:24
kanzurebbrittain: why hasn't mozilla funded an open source broadband system on a chip radio doohickey15:27
bbrittainworking on it15:28
kanzureany details?15:28
bbrittainpart of the logic behind FFxOS is that we can pressure manufacturers into opening up these systems... working? not yet.15:29
bbrittainthere is really _no_ incentive for them to do it15:29
bbrittainwhich is very frustrating15:29
kanzureno incentive for mozilla to do it, or no incentive for manufacturers to open up?15:30
bbrittainzomg. the manufacturers. I've never worked somewhere that was actually as altruistic as Mozilla15:31
kanzurei think that the cost of opening up is pretty big in a few cases, because of existing contracts/ip law that they might have already agreed to and already forgotten about15:31
bbrittainvery much so15:31
kanzurei think that mozilla probably could come up with a handful of incentives, not to mention just brand ("hey it's the only fucking radio chip that's open source and not nsa")15:31
bbrittainthe culture at these companies are very differnt15:32
bbrittainthey just don't get it. they are stuck in their ways15:32
kanzurei mean incentives for mozilla, not the other companies heh15:32
bbrittainahh. yea.15:32
kanzurebut knowing mozilla, it would end up being a javascript-emulating chip15:33
kanzure"it's like sun's chip, except web 2.0ier"15:33
bbrittainI don't like some of the marketing strategies for FFxOS and I'm skeptical of long-term success15:33
kanzurego on?15:33
bbrittainbut I agree with a lot of it's long term goals15:33
kanzure.wik java processor15:33
yoleaux"A Java processor is the implementation of the Java Virtual Machine (JVM) in hardware. In other words the bytecodes that make up the instruction set of the abstract machine become the instruction set of a concrete machine." — http://en.wikipedia.org/wiki/Java_processor15:33
bbrittainaka jazellle15:33
bbrittain*shudder*15:33
kanzurei wonder if the antenna hardware is particularly hard to manufacture for wifi, gsm, etc15:34
bbrittainwell, adoption of FFxOS has been OK, but not as much as we would like. monetization is gonna be difficult15:34
bbrittainand if we can't monetize, it's gonna be difficult for mozilla to survive in a few years15:34
bbrittainit's not, as long as you actually mean the antenna :P15:35
kanzureyes the actual antenna part15:35
kanzurei don't know if that's etched or just a filament attachment15:35
bbrittainthis is actually my last week at Mozilla. mixed feelings.15:35
kanzurekick the servo people in the rear for me15:35
bbrittainI do, like every day.15:35
bbrittain'cause rust >> like anything15:36
bbrittainor, has the potential to be15:36
gradstudentbotSo, I'll let you have my reagents when I'm done with my project.15:36
gradstudentbotWhere are the pipettes?15:36
bbrittainomg. gradstudentbot is so annoying.15:38
gradstudentbotYeah, but that was only a sample size of one.15:38
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kanzuresorry about that15:38
bbrittainahh, np. I was just gonna hide him15:39
kanzureno, it's a stupid bot anyway15:39
bbrittainit's like an actual grad student15:39
kanzurehttps://www.youtube.com/watch?v=ovEghdXC4tE15:39
kanzure.title15:39
yoleauxShit Graduate Students Say15:39
* bbrittain is so grad I've never been a grad student15:43
bbrittainmaybe soon though15:44
* bbrittain has no life plan15:44
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kanzurefor now your goal can be to avoid becoming the guy in that video15:47
bbrittainwell, I've worked with enough grad students to know being them sucks15:48
bbrittainbio ones especially15:48
* bbrittain wonders if kanzure was ever one of them15:48
kanzurei was an undergrad working in 3 labs at the same time15:49
kanzuredropped out of college15:49
bbrittainahhh15:49
kanzuremolecular biology, mechanical engineering, and a plant physiology biofuel group15:49
bbrittainwell, I've always said college is overrated - I don't have a degree either... at least yet.15:50
kanzurealthough the mechanical engineering group was more like a computer science graph theory group heh15:50
kanzurei keep forgetting the things you claim to work on at mozilla15:51
* dingo is a dropout also, dropout party!15:51
kanzurewebrtc?15:51
bbrittaindaala, webrtc, networking, tcpinc-tls... I dunno. shit.15:51
dingowhos the mozilla? bbrittain ?15:52
kanzurebbrittain bkero etc15:52
dingodo you know erik rose by chance?15:52
dingoi know mozilla is big, just asking15:52
bbrittainnah, he's a remote15:52
dingoi think he just started working remote now in SC or some shit15:52
bkeroMe15:53
bkerodingo: I do15:53
kanzurehaha15:53
bkeroI've been talking with him all day.15:53
bkeroHe just fucked off for dinner.15:53
dingotell him dingo/jquast says hello :)15:53
bbrittainbkero seems to be one of those portland people...15:53
* bbrittain is suspicious of them15:53
dingoi forked his 'blessings' python project to 'blessed' and gave him a lot of grief in pull requests15:53
bbrittainthey somehow managed to have the allhands up there...15:53
kanzurethere's a good number of portland people in here15:53
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dingoi managed to double his codebase, he couldn't keep up with me15:53
bkeroYup15:53
* bkero is portland people15:54
bkerocurrently dicking around with oculus rift15:54
bbrittainno way. we are doing that in MV right now too in the kitchen15:54
kanzureany particular sort of dicking?15:54
bbrittainlike. right now.15:54
bkeromv moz office?15:55
bbrittainja15:55
bkeroI'm considering making an x11 wm for it15:55
bbrittainewww.15:55
bbrittainwayland15:55
bbrittainactually usable right now15:55
bbrittainand easy too15:55
bbrittainjust for the basic shell15:56
bkeroI saw it. The code's a bit bitrotted.15:56
bbrittainfork*15:56
bkeroalso qt15:56
kanzurei think the wayland.freedesktop.org maintainer is in here15:56
kanzurewayland is qt specific?15:56
bbrittainnooo15:56
bkerono, but the oculus rift compositor is15:56
bbrittainthank god noooo15:56
kanzurebkero: forwhy?15:57
bbrittainreally? well qt can be used with wayland15:57
bkerokanzure: dunno  ask him15:57
kanzurensh: oculus rift tabbed browsing?15:57
dingomy aspirations for occulus rift are weak... i just want a good terminal emulator and vim...15:58
bbrittainsounds like the perfect usecase for a screen15:58
bkeroI do terminals and browsers, yeah15:59
dingoi have bad eyesight, so it would let me sit back for once instead of leaning in so much hehe15:59
bbrittainnah, I'm joking. I totally get it.15:59
bbrittaindk2 is pretty impressive15:59
bbrittainI've heard the consumer beta is absolutely astounding.15:59
dingoyeah it'll be a game changer, no doubt about it16:00
dingoim feeling a bit too old for it myself16:00
bbrittainlolz https://news.ycombinator.com/item?id=816486016:00
bbrittainkanzure: ^16:00
kanzure"I funded this project on kickstart." what a moron, it's not called kickstart and nobody cares that you gave them money (you and 1000 other idiots)16:03
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kanzuredingo: a stenographer emailed me today and says she types 200 wpm for 8 hours straight with no breaks with this doohicker, http://www.infinitytraditional.com/infinity-ergonomic-court-w-lcd/16:04
dingoahh yes16:05
kanzurethis might be an acceptable alternative not sure http://utopen.com/stenoboard-kits/21-stenoboard-11-kit.html16:06
kanzure(the plastic looks a little weak or uncomfortable)16:06
dingomm that 2nd one, the black image, looks a lot like the layout of my kinesis16:06
dingomore focus on the thumboard section16:06
kanzuredownside is you will be muttering "what's the key combo for 'write an angry email'?" all day every few hours16:08
dingoahh i don't write angry emails anymore16:08
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kanzurewhat!16:08
dingoi'm on my way out any day now16:08
kanzureangry emails aren't just a result of employment, it's a way of life16:09
kyknos_paperbot: http://onlinelibrary.wiley.com/doi/10.1046/j.1365-294x.1999.00699.x/abstract?deniedAccessCustomisedMessage=&userIsAuthenticated=false16:19
paperbothttp://libgen.org/scimag/get.php?doi=10.1046%2Fj.1365-294x.1999.00699.x16:19
kanzurehint: don't include userIsAuthenticated=false16:20
kyknos_GOOD POINT16:21
delinquentme_does hadoop facilitate talk between nodes?16:21
delinquentme_specifically intra-compute nodes16:22
kanzure"Development at Google has since moved on [from hadoop mapreduce] to technologies such as Percolator, Flume and MillWheel that offer streaming operation and updates instead of batch processing, to allow integrating "live" search results without rebuilding the complete index."16:24
dingomillwheel i think was robert pikes project?16:28
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dingolooks pretty good, its like a map-reduce awk16:28
dingo:)16:28
dingohe talks about it in one of his go talks16:29
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kanzuredingo: give me a reason to bother with golang?16:29
dingonope! it was a language that inspired golang, not go itself, hehe16:29
kanzurenothing about golang looks /bad/ but i do not feel particularly compelled yet16:29
bbrittainreally? it doesn't verify *anything* about multi-thread memory safety16:30
bbrittainno generics16:30
bbrittainnot actually fast16:30
bbrittainI see no compelling reason for it at all16:30
bbrittainbesides the cute mascot16:30
kanzureso, i haven't looked into golang criticisms at all yet16:31
kanzurebut i do remember googlers were complaining about everything else being inefficient (which i thought was an odd claim)16:31
ParahSailingo is efficient at compiling16:31
kanzurei also don't remember what they were comparing to- maybe java- in which case lots of purpose-specific things can outrun that16:31
ParahSailinmaybe efficient for strangers to pick up code and maintain it16:32
kanzureehh is it? i was looking at some golang code the other day and was not very amused.16:32
ParahSailinit takes the "only one way to do it" to extremes, even enforcing whitespace rules16:33
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ParahSailinof course its really low level and verbose is you get out of the domain it is useful in, which must be pretty limited16:33
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kanzurethe gripe i had about rust when i tried it was the standard library was lacking16:34
ParahSailinit doesnt have a decent bigint library yet16:35
ParahSailinwhich i guess is partly because mozilla doesnt want to link to gmp16:35
ParahSailinalso i dont think it even has semantics around epoll yet?16:36
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ParahSailinat least rust is using some concepts developed in computer science from less than 40 years ago16:38
bkerobbrittain: Are you on the moz vr team?16:39
bbrittainbkero: hah, no16:39
bbrittainbkero: https://phonebook.mozilla.org/#search/bbrittain@mozilla.com16:41
jrayhawk"15:58 < kanzure> i think the wayland.freedesktop.org maintainer is in here" there are a lot of maintainers16:42
kanzureokie dokie16:43
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kyknos_paperbot: http://onlinelibrary.wiley.com/doi/10.1111/mec.12234/abstract16:58
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/f8be5de78d0078a95d999e5f9095f22.txt16:58
dingo19:33 < ParahSailin> go is efficient at compiling16:59
dingoalso very easy to deploy16:59
dingojust a single static binary16:59
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newbeehello17:15
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Guest19104hello17:22
Guest19104Installed wxPython from rpm17:34
Guest19104 tried to find the rpm and finally I got rpm file for my OS as well.  Installation was good..but when I do python >>> import wx Traceback (most recent call last):   File "<stdin>", line 1, in ?   File "/usr/lib64/python2.4/site-packages/wx-2.8-gtk2-unicode/wx/__init__.py", line 45, in ?     from wx._core import *   File "/usr/lib64/python2.4/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 4, in ?     import _core_ Impo17:34
bbrittainuhhh. Guest19104 probably wrong channel.17:35
nmz787yo17:40
nmz787guest whatever i told to come hete17:40
nmz787here17:40
nmz787bbritain17:41
nmz787kanzure any ideas re good links on teaching her how to compile or install on linux?17:41
bkerodingo: he sez hi back17:42
dingowithout any cuss words? :)17:43
bbrittainGuest19104, nmz787: probably a good first step would be to upgrade to a recent python version17:44
bbrittainat least a 2.6.*17:44
kanzurenmz787: compilation can be handled by reading gcc manual?17:44
* bbrittain rolls eyes17:44
kanzurehm?17:44
kanzurei can't telepathically transmit all my knowledge about "compile or install on linux"17:45
kanzurethat's a huge topic?17:45
dingoyeah its more like "lets share screens and i'll figure it out and explain it when I'm done"17:45
dingohard to do that kind of stuff over irc conversation17:45
kanzurei wish people were more upfront about requests for that17:45
bbrittainit's also not a very helpful response though, it's like saying go google it.17:47
bbrittainit comes off as dismissive, even if understandable.17:47
bbrittainnmz787, Guest19104: what is the endgoal of this?17:50
dingoi guess Guest19104 is learning/wanting to make a python gui program?17:51
Guest19104python version is 2.717:51
dingoGuest19104: is this CentOS or RedHat linux, by chance?17:51
bbrittainprobably fedora, yes?17:52
dingoinstead of 'python', try 'python2.7'17:52
Guest19104yes I want to build a GUI Application using wxPython17:52
Guest19104Its Linux 2.6.1817:53
bbrittainwell, update then17:53
dingonaw forget that, that'll open a whole new can of worms!17:53
dingogosh that is like 8 years old, too :)17:54
bbrittainhence it being problem #117:54
bbrittainbut... this is like 100% off-topic17:54
dingoi thought this was the IT support channel17:54
dingoi always come here to trick kanzure into solving interesting problems17:55
dingoi think Guest19104's problem just isn't interesting -- thats the problem17:55
nmz787sshe seems new in general to compuling17:55
bbrittainthere is no compiling going on here17:55
nmz787figured someone here would know where to point her as a newb17:55
bbrittainto #python17:55
nmz787there was17:55
nmz787in a google group discussion17:56
nmz787but they werent as smart as ppl here17:56
kanzureugh17:56
bbrittainGuest19104: go join #python, they can help17:56
bbrittainGuest19104: or even #wxpython17:57
Guest19104??17:57
Guest19104horrible group17:57
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nmz787wxPython RC is dead17:59
kanzurebbrittain: i don't even know where to begin mocking all of this17:59
nmz787irc17:59
bbrittainkanzure: I should have never engaged17:59
dingoi privmsg'd Guest19104 my offer for help for the next hour, if Guest19104 can figure out how to find private msgs :) but we can't continue this here17:59
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kanzurebbrittain: well maybe, but the root cause here is nmz78718:00
dingoim just babysitting PyInstaller builds for windows right now anyway18:00
dingoPyInstaller :) way harder than wxPython18:00
kanzurebbrittain: it's not the newbie's fault for showing up in here18:00
* bbrittain glares at nmz78718:00
kanzurewell i was hoping for help explaining to nmz787 why that's a bad idea, not only glaring18:01
kanzure(but glaring is acceptable)18:01
* bbrittain glares angrily at nmz78718:01
kanzurehah18:01
bbrittainbetter?18:01
kanzurewell it's like showing up in #firefox and asking them to help with llvm because "you guys are pretty smart"18:01
bbrittainevery. single. day.18:02
kanzureoh that happens huh18:03
bbrittainthankfully it takes some level of ability to add irc.mozilla.org to your irc client18:03
kanzure"how am i bookmark? devs pls respond"18:03
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kanzurei guess that's vaguely browser related18:03
kanzuredamn18:04
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bbrittainI'm a big fan of bars simple tests to gain access to groups18:04
bbrittaincan you compile? you may join #llvm18:05
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bbrittainactually, the most worthwhile channels I am on are not on freenode... because it is too easy to get here18:05
bbrittainOFTC ftw18:05
dingoi thought about making a "hacker's test" as part of the application for an account on my telnet/ssh bbs :)18:05
kanzurethat's hard to do for this channel, because it would cut off most of the biology lizards18:06
bbrittainI mean, the bar needs to be incredibly low in my opinion... but the amount of people it will keep away is astounding.18:06
bbrittainhow many of them actually are here anyways?18:06
bbrittainI only ever see tech talk18:06
kanzurethree or four18:06
dingoi stay on efnet because of its maturity, everybody there is minimum age 30 for the most part, its quiet but its good conversations.18:07
kanzure"i stay on irc because of its maturity" butthead18:07
kanzurehehe18:07
dingoshutup or i'll hack your channel!18:07
dingoand ddos you18:08
kanzureParahSailin: let's ddos glowing plant and demand a ransom18:08
bbrittainthe way to actually get them involved would be to not use IRC18:10
bbrittainhmmm18:10
kanzurewell, it's not like i'm interested in hearing 100 grad students tell me how doing anything outside a lab is illegal18:10
bbrittainwait. wat.18:10
bbrittainreally? do they do that?18:10
kanzurethere's a bunch of trolls on the diybio list18:11
kanzureangry people who are angry that they had to go through academia to get their "credibility"18:11
bbrittainpshaw. I'm not gonna do that.18:11
kanzurenot all of them do that, of course18:12
bbrittainI've always wondered where the YCnews clone of biology is18:12
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bbrittainis there one?18:12
kanzuredidn't we already have this conversation18:12
bbrittainmaybe?18:12
kanzureand i claimed something about biologists hating interneting18:12
bbrittainseems plausible18:12
bbrittainyea18:12
bbrittainwe did18:13
bbrittainI forgot how that convo started18:13
kanzureprobably someone complaining about no forums18:13
bbrittainbut... but... HOW DO WE MAKE THEM DO IT18:13
kanzurewhat about blackmail?18:13
bbrittainI'm of the opinion that one of the reasons that tech has exploded at such a rate is that it is inherently linked to increased communication.18:14
bbrittainin particular communication that is open18:14
bbrittainhow do we get the biotech people onboard18:14
bbrittain??18:14
kanzurei'm not sure that's a real problem18:15
kanzurei mean, go look at the quality of "discussion" at bioforums or w/e18:15
kanzuretotally boring useless crap18:15
kanzurehttp://www.protocol-online.org/forums/index.php18:15
kanzurehttp://www.protocol-online.org/forums/topic/29628-celecoxib-forms-crystals-when-diluted-in-rpmi-how-do-i-avoid-this/18:15
kanzureand nobody can type a reply worth a damn18:15
bbrittain:(18:16
bbrittainso the community sucks18:16
bbrittainwell, also the focus of the site is wrong, there is no culture18:17
bbrittainnor does it seem to facilitate it18:17
kanzurewhat would you expect the culture to be18:17
bbrittainlike HN of 3 years ago please.18:18
bbrittain:D18:18
kanzurethere's culture there, but i dunno about community18:18
bbrittainhah, well it's hard to not have a culture18:19
bbrittainhuh, I wonder if the abrasiveness of the early tech community was a net positive. an abrasive (diy)biotech community might keep out the problem ppl18:20
kanzurethere was a wonderfully abrasive core group of people in diybio, but then a bunch of assholes that wanted to include everyone (including people that weren't interested in diybio)18:21
kanzures/was/is18:22
kanzurethere are very different "market structures" at play in the biology world18:22
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kanzurelike, for one, the secrecy of different competing labs, keeping everything on paper in notebooks that you have to return to the school when you leave, etc18:23
kanzurenever-ending stream of incoming students18:23
bbrittaindamn. maybe I should actually read the diybio lists. they always seemed like junk18:23
kanzurelike any other feed, there are good contributors and then there are boring contributors18:23
bbrittainkanzure: so what is needed then is "simply" a stronger open/libre culture, no?18:25
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kanzurehonestly i have no idea18:27
bbrittainbut... I just want a biology hackernews I can waste time on18:31
kanzurewell, at minimum, you will have to make sure that the "press release frenzi" stays the hell away18:32
kanzurebecause that is just damaging and deadly18:32
bbrittainyea...18:33
bbrittainstep one: acquire code. step two: acquire legetimate orginization to attach name to a la HN style. step three: acquire 10-15 people. step four: tell them not to advertise18:34
kanzurei think hacker news is a good idea for lead generation for their venture capital plans18:34
kanzurei am pretty surprised that nobody else has caught on to that strategy18:34
bbrittainit's genius18:35
kanzurelike, not even the major non-profits?18:35
bbrittainwell, really I hate that aspect of YC18:35
kanzurehm?18:35
bbrittainVC pisses me off18:35
bbrittainnot like I'm about to go join a startup anyways18:35
kanzureoh, well it might be an annoying debasement of human decency, but still genius18:36
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bbrittainas a way of minimizing risks for the companies that inevitably wind up buying them (assuming success)? yes.18:37
bbrittainex: google, fb18:37
kanzurei meant hacker news, not the venture capital game itself18:37
bbrittainahh yes18:37
bbrittainI view bio-HN as the same but with an academia bent (unfortuntly)18:38
bbrittainkanzure: hmmm, I know you hate them, but would you use a news.ginkgobioworks.com? or a news.genomecompiler.com?18:40
bbrittainassuming it existed18:40
kanzurei wouldn't be opposed to stalking them18:41
* bbrittain rolls eyes18:42
bbrittainthat wouldn't be helpful18:42
kanzureheh18:42
kanzurei might go for one from transcriptic18:45
bbrittainugh. really? out of all of these companies you like transcriptic?18:46
bbrittainit's cool. I would never use one from genomecompiler either though18:47
kanzure"like" heh18:47
bbrittaintranscriptic is ease of use at the cost of centralization. which is bad18:48
bbrittainit'll make the inevitable regulation that much easier18:48
kanzurei agree that the centralization they are pimping is bad, but that has sort of already happened18:49
kanzureand also i dunno if the market can support the opposite. not sure.18:49
jrayhawkhttp://www.youtube.com/user/AncestryFoundation/videos piles of new videos today18:50
bbrittaindo you work at one of these companies, or are you pure diyer?18:51
kanzurei do not work at those companies18:51
kanzurei prefer open source hardware in general, and i'm particularly fond of people doing things on their own18:52
bbrittain"these"18:52
kanzureerm, i do independent contracting to fling code at various software companies18:52
nmz787OMG back to my laptop!!!18:53
nmz787sorry to piss you off bbrittain but it is actually kinda neat that it stirred up so much activity :)18:54
nmz787last few weeks have been a little slow IMO18:54
kanzurethat's not neat, you moron anyone can fucking troll better than that18:54
nmz787?18:54
nmz787I wasn't trolling18:54
kanzurestirring up activity that is off topic is not trolling?18:54
nmz787just that I know the ppl in here /could/ help18:54
kanzureyou have a really weird definition of trolling18:55
nmz787everyone talks about software all the time in here18:55
kanzureanyway, i'm just informing you that you could potentially troll better if you actually put your mind to it18:55
nmz787oh ya18:55
nmz787i been trolling since i was in preschool18:55
kanzurewait is that disgusting?18:55
nmz787I reformed mostly, before I met you18:56
kanzurewhat's wrong with people knowing about software anyway18:57
nmz787I guess I shouldn't have mentioned anything18:57
nmz787maybe you would have posted some real links18:58
kanzurehuh?18:58
nmz787featuring keywords like 'howto' and such18:58
nmz787'tutorial'18:58
nmz787why do I get the blame?18:58
kanzurewell at the moment because just saying "howto" doesn't explain anything to me18:59
nmz787re the guest earlier18:59
kanzurei am completely unaware of any generic tutorial about "compiling and installing on linux" that would be both correct and actually helpful19:00
* bbrittain still hasn't stopped glaring at nmz787 19:00
* nmz787 is immune to glaring19:00
* nmz787 continues eating his food-cart indian food platter19:01
kanzurehttps://en.wikipedia.org/wiki/A_Modest_Proposal19:08
kanzure"A Modest Proposal for Preventing the Children of Poor People From Being a Burthen to Their Parents or Country, and for Making Them Beneficial to the Publick,[1] commonly referred to as A Modest Proposal, is a Juvenalian satirical essay written and published anonymously by Jonathan Swift in 1729. Swift suggests that the impoverished Irish might ease their economic troubles by selling their children as food for rich gentlemen and ladies.[2]"19:09
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bbrittainlol, I'm reading the diybio mailing lists21:01
bbrittainand a post?21:01
bbrittainkanzure, first to respond21:01
kanzure"and a post?" what?21:03
bbrittainsorry, I'm reading it through google groups like a scrub right now21:04
bbrittainan email21:04
bbrittainI approve21:04
kanzurei generate a lot of email21:04
kanzuresort of hated for it21:04
bbrittainit's like "we are making this open source", and you come in and are like "LIES"21:05
kanzurewell someone has to call them on their bullshit21:05
bbrittainstrongly approve21:05
bbrittainsooooon I will have a 100% free software/open hardware laptop. and it will be amazing.21:05
bbrittainnovena ftw21:06
kanzureeven wifi?21:06
bbrittainya21:06
kanzuredetails?21:06
bbrittainwell... the SSD won't be21:06
bbrittainbut... we can pretend21:06
bbrittainraw board: https://www.crowdsupply.com/kosagi/novena-open-laptop21:06
bbrittainmade by xobs & bunnie21:06
bbrittainthen I'm making a carbon fiber case21:06
kanzureoh right bunnie isn't dead21:06
bbrittainand only sourcing open hardware for the rest21:07
bbrittainIt'll be a shit laptop... but so awesome21:07
bbrittainall these bio people I'm gonna be working with are gonna be so confuzeled. so will TSA21:07
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kanzuresoon you will be contributing gradstudentbot lines with the best of them21:08
bbrittainnah, I shouldn't have to deal with any grad students. I swear I'll never go to a bio academia lab21:09
bbrittainagain21:09
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kanzureoh i thought that's where you were going?21:10
bbrittainnaaaah21:10
kanzuremozbio?21:10
bbrittainhaha, I can't tell you. you would harsh on me way too much21:10
kanzuredon't deny me my uh.. something.21:11
bbrittainnah, I'm about to start working at Ginkgo. :P21:12
* bbrittain waits for the dislike to boil over21:12
kanzurebtw you may prefer reading diybio in reverse21:12
kanzureoh dude you're totally going to have to prank tom knight for me21:12
bbrittainhaha21:12
kanzureput a woofie cushion on his chairs21:12
bbrittainhe was out of town when I went to go interview. I'm looking forward to meeting him21:13
kanzurehmm where did the email archive go21:14
kanzure141 MB http://diyhpl.us/~bryan/irc/diybio.maildir.tar.gz21:15
bbrittaindownloadin'21:15
bbrittainI hate my internet so much. thats gonna be the best part of going to boston21:16
bbrittainyou'd think SV would have good internet21:16
bbrittainNOPE21:16
kanzureall the cool kids just use ec221:16
bbrittainok. opinions on Ryan Bethencourt?21:16
kanzureworth meeting21:17
bbrittainreally? he keeps coming of as a tool21:17
kanzureyes but he's a useful tool21:17
bbrittainproblem #1) posting articles on linkedin21:17
kanzureand i haven't seem him wrong, iirc21:17
bbrittainsome of us don't even have a linkedin.21:17
kanzureoh, don't judge him by his emails his emails are boring and dumb21:18
bbrittainand his tweets21:18
bbrittainI'll keep that in mind though21:18
bbrittainsorry for all the questions. I'm trying to immerse myself in this stuff21:26
kanzureno, everyone else should be apologizing21:27
bbrittainfor what? not immersing themselves?21:28
kanzurepretty much21:28
bbrittainor for not responding to my attempted immersion21:28
kanzurenah they should be welcome to ignore you21:28
bbrittainexcellent. I would highly advise it :P21:29
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bbrittainI keep seeing nmz787 on these emails as well21:33
kanzureyes he is a person that exists21:33
kanzurethat's where we abducted him21:33
bbrittainlol at nmz787 trying to form an iGem team at RIT. thats never gonna work. too much co-ops and apathy21:34
nmz787https://www.youtube.com/watch?v=MkTL2Ug6llE21:38
kanzure"I don't know whose idea this was, but I don't think they thought it through very well."21:38
nmz787bbrittain: that was like 5 years ago21:38
kanzure.title21:38
yoleauxScienceCasts: The Sound of Earthsong21:38
kanzurenmz787: he reads fast21:38
bbrittainnmz787: you know joey bullard?21:39
bbrittainkanzure: I'm only back till january. I'm slow. but he made an irritated iGem comment about it at Ellen Jorgesun21:40
nmz787idk the name offhand21:40
kanzurereading in that order seems a little backwards21:41
bbrittaingenspace founder21:41
kanzureif you read the other direction, you would see how genspace started21:41
kanzureand when ellen got involved21:41
nmz787bbrittain: do you know tom knight?21:41
bbrittainI know that history21:41
bbrittainI've met ellen21:41
bbrittainnmz787: not yet :P21:41
bbrittaingimme 2 weeks21:41
kanzureand a woofie cushion21:41
bbrittainI'll flip reading directions now that your archive is downloaded21:42
kanzurenot sure what to suggest you for that. notmuch?21:43
bbrittainvim21:44
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kanzurestdout, duh21:44
bbrittainprobably easier tbh21:44
bbrittainahh. starts off with Jason Kelly. I know these people :P21:45
nmz787are you starting from the beginnning?21:45
nmz787or the end? (when does that end?)21:46
bbrittainbeginning I think? It's 200821:46
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bbrittainomg. I'm gonna need to write a script to parse this or something21:46
kanzurehaha 2008 "[Hplusroadmap] Fwd: Re: Garagista Protocols and Equipment"21:46
bbrittainthis is unreadable21:46
kanzurei keep forgetting that hplusroadmap was pre-diybio21:47
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bbrittaindamn. what was I doing back then21:50
kanzuremining bitcoin21:51
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nmz787http://en.wikipedia.org/wiki/Plasma_antenna21:51
kanzure.wik plasma antenna21:52
nmz787sooo, it mentions solid-state versions21:52
yoleaux"A plasma antenna is a type of radio antenna currently in development in which plasma is used instead of the metal elements of a traditional antenna. A plasma antenna can be used for both transmission and reception." — http://en.wikipedia.org/wiki/Plasma_antenna21:52
nmz787sounds like the perfect compliment to sdr21:52
kanzuredid you ever end up meeting gene_hacker21:54
nmz787bbrittain: you went to RIT?21:54
nmz787or are now?21:54
bbrittainstill, kinda21:54
nmz787me too :P21:54
nmz7873 classes left21:55
bbrittainhaha, you should wrap that up21:55
nmz787yeah21:55
nmz787it's getting there21:55
bbrittainI'm taking a year off to work for ginkgo21:55
nmz787ahh21:55
nmz787they're tried that on me21:55
kanzurewhat?21:55
nmz787I think I went to JBEI that year instead21:56
bbrittainI'll probably graduate21:56
bbrittainmy parents would murder me if I didn't21:56
kanzuremurder them first, problem solved21:57
nmz787i actually still need the english 101 type class21:57
nmz787like the one I should have taken the very first quarter21:57
bbrittainhaha, you know semesters now :D21:57
nmz787yeah21:57
nmz787they don't care for me21:57
nmz787i just have to replace with the same classes21:58
nmz787i left just before semesters started21:58
nmz787i need a calc b/2 class, and an analytical chem class... since the time I took it i didn't do any of the writeups at all. Got great yields and results on experiments though!21:59
bbrittainsemesters are awful21:59
bbrittainI've only done one21:59
bbrittainbut it was awful21:59
nmz787quarters were OK21:59
nmz787they were kinda too quick21:59
nmz787in some cases22:00
nmz787everyone always complained about long classes that were like 3+ hours long22:00
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nmz787but I prefer them generally over 2x or 3x a week22:00
bbrittainsame22:00
nmz787I also tend to hate non-project-based homework22:01
bbrittainwhich is why I just don't do them22:01
nmz787or homework that is using some shitty software/reporting standard22:01
nmz787yeah22:01
bbrittainI told my physics teacher I wasn't gonna install flash to do his demos22:01
bbrittainhe was ok with it. he was an emacs user22:02
bbrittainall of his slides were done with beamer :P22:02
bbrittainnah RIT is OK.22:04
bbrittainI'm glad not to be there right now there22:04
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bbrittainnmz787: are you gonna go back?22:07
bbrittainis there any point to going back?22:07
kanzurenot having to murder parents?22:10
kanzureotherwise no22:10
bbrittainhmm. is it possible nmz787 posts more on diybio than kanzure??22:12
bbrittains/posts/emails/22:13
kanzureyeah he's sent about 800 emails more than me22:14
kanzurehttps://groups.google.com/forum/#!aboutgroup/diybio22:14
nmz787oO22:14
nmz787stats22:14
nmz787bbrittain: nah I live in Oregon full-time22:14
nmz787I can do it all locally,  I just don't really see much point in geting it done fast22:15
nmz787I have other things to do22:15
nmz787I've been doing one class per quarter/semester22:15
nmz787taking the summer off22:15
nmz787:P22:15
bbrittainnoice22:15
nmz787but I work at Intel22:16
nmz787and my quest for The One Strand22:16
nmz787my precious22:16
nmz787nice, we are the top 2 posters22:18
nmz787who was unknown?22:18
nmz787kanzure: have you got these stats manually from the archive?22:18
bbrittainhuh, I wonder what the ginkgo people think of you all22:18
kanzurethey think pretty negatively of me22:19
kanzureconsidering i pissed off tom knight22:19
bbrittainI'll let you know what institutionalized "diybio" has to say22:19
nmz787I can see why mega is 4th22:19
kanzureprobably cathal22:19
nmz787but 3rd must be Cathal22:19
kanzuresince he went all rogue and deleted his gmail account blah blah blah22:19
kanzure"fuck the feds!!!1oneoneone eurodance forever"22:19
nmz787I came to that independently, I think... so that seems to add validity22:19
nmz787(I totally could have been subconsciously influenced while alt-tabbing)22:20
kanzurewell the other reason it makes sense is because cathal is not elsewhere on the list22:20
nmz787yeah22:20
nmz787my logic also22:20
bbrittaindelete gmail +122:20
bbrittainhost your own22:20
kanzureyeah but you don't have to do that while pimping eurodance22:20
kanzuresome of us have refined musical tastes22:21
nmz787some dude told me he pwned google audio capcha but on the demo day they changed their capchas22:21
kanzurelike pop eurodance thank you very much22:21
nmz787something that made his ANN stop working22:21
nmz787which I wonder, if it was an ANN, shouldn't it be easy to add new training?22:21
nmz787not that I've had great experience with ANNs22:21
kanzureweighted perceptrons don't necessarily respond well to all new types of data22:21
nmz787the one i did was backprop something22:22
nmz787bbrittain: diybio was pretty much my answer to RIT not fully satisfying22:23
nmz787RIT was/is good though22:23
nmz787I did a year of CS, took some semiconductor labs and lectures22:23
nmz787had a job with Jon Schull for a while and got to 'innovate' all over campus (generally increasing my access to resources)22:24
* bbrittain is actually a CS major22:24
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nmz787that was all in addition to the core biotech22:24
nmz787with most of the lab courses there except for plant biotech and the bioremediation/fermentation course22:25
nmz787(biotech lab courses)22:25
bbrittainI'd like to see an iGem team there22:26
bbrittainbut I don't see that working out with co-ops22:26
nmz787probably a lot of other stuff I don't remember22:26
kanzurewhy igem though.22:26
kanzurewhy not non-biobrick stuff22:27
bbrittainbiobrick is a good standard22:27
kanzurehave you ever used a biobrick22:27
bbrittainyes22:27
kanzurehave you ever used a non-biobrick22:27
kanzurelike regular old gene stuff22:27
bbrittainyes... but I wouldn't say what I used was standardized22:27
bbrittainwell yes22:27
nmz787why standardize though? why not just perfect writing arbitrary high-fidelity DNA22:28
kanzurestandardization can be useful22:29
bbrittainit's simply standards. there is nothing harmful about that, and there is good in decreasing cognitive load22:29
nmz787I guess from a software perspective22:29
nmz787or engineering22:30
nmz787I mean in the lab22:30
bbrittainmore or less how I think of things22:30
bbrittainminimal benefit22:30
nmz787I guess that may be a different module from what you're talking about22:30
bbrittainI understand why you would be anti-igem, it is an orginization that is academia centered22:31
bbrittainand biobricks... I imagine getting them is very had22:31
bbrittainhard*22:31
bbrittainbut isn't there a biobricks foundation?22:31
kanzurethe biobricks foundation is just drew endy22:32
nmz787can you suppress nerve pulses with something highly temporal? i.e. it can be modulated on-demand22:32
nmz787psh22:32
nmz787no one is really anti-academic22:32
nmz787it's just anti-they-way-it-generall-goes-down22:32
nmz787generally*22:33
nmz787i guess the institution?22:33
nmz787which may be malleable somewhat, but most often seems not22:33
bbrittainlike, isn't the point of biobricks to become a standard for synth bio engineering?22:34
kanzureone of my professors was extremely anti-biobrick http://ellingtonlab.org/blog/2012/11/09/on-apologetics/22:34
nmz787I love being a student though, I get papers!22:34
bbrittainit's great22:34
nmz787that's like saying objects or classes or structs are great though. It's old news.22:35
nmz787ZOMG a database!22:35
nmz787at least that's what the media makes of it22:35
nmz787they also don't really have any non-competition purchasing options.22:36
bbrittainkanzure: wait. wat. did you compete that year?22:36
kanzure"Now, these kids, they’re such crazy idealists. If you’re not a liberal when you’re young, you don’t have a heart, and if you’re not a conservative when you’re older, you don’t have a shotgun, amiright? They actually had a slide (which mercifully the judges did not ask to see) in which they thought they rationally set out some reasons for a different standard. It included, in part:"22:37
kanzure"“…unfortunately it was rejected due to multiple illegal restriction sites. Our assembled operon came from a 13 kb segment, a size that will almost invariably contain illegal sites. In smaller constructs, it may be viable to change these sites, but as iGEM projects become more ambitious in size and scope, this becomes less and less feasible. And now, since we have Gibson assembly and other next-gen methods, the traditional assembly ...22:37
nmz787at least they used to not, but I was turned off basically when the costs were several thousands of dollars and the Science college was hella poor compared to all the other RIT colleges... so we were priced out due to lack of grants for it basically.22:37
thundarakanzure: I saw ellington give a talk last year, smart guy22:37
kanzure... standards have become unnecessary, and mutating away restriction sites has become a waste of time, and we have been thinking about ways to improve it. Is it time for a new standard?”"22:37
kanzurenope22:37
kanzurealso scary22:37
kanzureellington is really fun22:37
bbrittainuhh. soo ellington is anti-standardization?22:39
kanzureno. read the quote?22:39
thundara22:36:02 < nmz787> I love being a student though, I get papers!22:39
kanzurebiobricks is not optimal in various ways22:39
thundaraWhat's the benchmark then? Cures? Other people using your work?22:39
bbrittainI did. it still sounds like he is.22:40
bbrittainlike, why submit something wis multiple illegal restriction sites22:40
thundarakanzure: Yeah, I learned other methods last year that had fewer pots / no scares22:40
thundaraScars*22:40
bbrittainisn't part of iGem all about making parts22:40
kanzuredoesn't that seem a little stupid?22:41
kanzure"genetic engineering competition, BUT you can only do genetic engineering that is outdated and broken"22:41
thundaraBut even ignoring dna synthesis, seems like an outdated system that would run into roadblocks on anything large22:41
kanzurebbrittain: i don't think they submitted the 13 kb fragment to the biobricks registry22:42
bbrittainyea, but such is life with standards. you obviously have never had to deal with the IETF :P22:42
nmz787http://schmerzzentrum.ch/newsletter/2006-05/artikel-zu-cord-stimulation/shealy.pdf22:43
nmz787electrical inhibition of pain by stimulation of the dorsal columns22:43
bbrittainI mean, I guess gibson > biobrick assembly. I wonder how they will fix this in iGem22:44
kanzurewasn't there an entire medical profession about that22:44
kanzuresomething about anesthesiologists22:44
nmz787bbrittain: but the standard you're thinking I think, is determined by the cells, not computer storage methods22:45
nmz787storage/access22:45
nmz787and even those we really are discovering22:46
nmz787a gene is always changing definition22:46
nmz787we don't even know if genes are the wrong way to think about things at a fundamental level22:47
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bbrittaintrue22:47
bbrittainelaborate further?22:47
nmz787(by 'and even those' I mean the rules of the biosphere)22:47
kanzuremethylation22:47
nmz787we aren't talking about storing ascii string units22:47
ParahSailinkanzure: so, you know oxford nanopore and the minIon?22:48
nmz787I tend to think of it like demoscene22:48
kanzureParahSailin: whatabout22:48
bbrittainok. that makes sense to me :P22:48
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ParahSailinthey are very serious that people dont "mispronounce" it as the english word spelled the same way22:48
nmz787non-local weirdness22:48
kanzureParahSailin: they are morons22:48
nmz787frameshifting probably/maybe/sometimes22:48
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ParahSailinso much that in their contracts with anyone licensing their tech, that they have a clause specifying how the other parties employees must refer to the machine22:49
kanzurethat's cute22:49
kanzurewhat are the other terms22:49
bbrittainnmz787: well, my understanding is that the whole point of standardization is to minimize that as much as possible, no?22:49
bbrittainParahSailin: thats horrible22:50
ParahSailinyou have to give them microbeads with all the brown ones removeD?22:50
kanzureParahSailin: we have acquired a ginkgo mole22:51
* bbrittain hides22:51
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kanzureoops i mean sleeper agent22:51
bbrittainmuch better22:51
ParahSailinwhats gingko22:51
kanzuresome bullshit22:51
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bbrittainkanzure--22:51
kanzuretom knight's thing22:52
kanzurejason kelly etc22:52
kanzurebbrittain: i reserve the right to mock anything and anyone22:53
bbrittainkanzure: and I reserve the right to decrement you22:53
nmz787bbrittain: that kind of standardization is physics/chem/biochem moleculez-n'at22:54
bbrittainnmz787: damn I have so much to learn. I've got 2 weeks. at least my CS skills are way better than what they need :P22:55
nmz787if they have you programming it should be fine22:55
bbrittainlol. yes.22:56
nmz787 but remember to have fun if you start pipetting22:56
bbrittainthey have robots for that22:56
bbrittainnah, I want to learn that stuff22:56
nmz787or counting cells with a sharpie22:56
bbrittainand cameras for that22:56
bbrittain<- seen 'em22:56
nmz787nah bro, you need to load the .bmp into excel cells22:56
ParahSailinlua is really quite shitty isnt it22:57
bbrittainnah uh. lies.22:57
ParahSailinhad to derp around with openresty stuff today22:57
bbrittainif so. I will fix that.22:57
bbrittainnah, the whole reason I'm working there is so they will teach me the wetware stuff. which they said they would22:57
bbrittainbut I'm primarily leveraging my bioinformatics background for them22:58
bbrittainand my coding skills22:58
ParahSailintheres nothing to learn in wetware22:58
nmz787cool22:58
ParahSailinjust pipette shit22:58
nmz787hahaha22:58
nmz787don't listen to that lie!22:58
bbrittainI've pippeted stuff before...22:58
bbrittainso I'm done?22:58
ParahSailinyou might be smarter than a tecan robot, so you're overqualified22:59
nmz787more useful is actually just learning about /everything/ though22:59
nmz787like, everything.22:59
thundaraParahSailin: Intuition about physical systems? (Though that doesn't take 6 years to learn)22:59
bbrittainnmz787: thats the plan22:59
bbrittainregardless of kanzure's opinion: my impression is my coworkers are very smart and can teach me a lot.23:00
ParahSailinbbrittain: you're just on a farm team for illumina23:00
bbrittainelaborate?23:01
nmz787yes they are smart23:01
ParahSailinin sportball there are sometimes minor league teams that are based in third tier cities23:01
nmz787i don't think I read anyone saying otherwise23:01
nmz787or at least I didn't get that message23:02
bbrittainnmz787: kanzure was harshing on ginkgo earlier today :P23:02
nmz787well recently we were harshing on biobricks23:02
ParahSailinthat are mainly for training players for real teams, but still make money themselves because sometimes people just want to see a cheap sportball game and dont need to deal with traffic and shit for a major team23:02
nmz787I still didn't see any attacks on intellect23:03
bbrittainnmz787: OH! thats not what I meant23:03
thundara"Small fries"?23:03
nmz787or frys23:03
nmz787like a fish fried23:03
nmz787a small fish23:03
bbrittainnmz787: although they were accused of being elitist :D23:04
nmz787at least that was how I think a felix the cat cartoon portrayed the term23:04
bbrittainParahSailin: but... why would I work for Illumina?23:04
nmz787oh, well that's part of academic institution at large23:04
ParahSailinbecause san diego is sunny every day, and illumina has moneys?23:05
nmz787but yeah MIT is cool too23:05
nmz787so it's kind of like teasing a girl you like instead of being nice to her23:05
nmz787I think23:05
nmz787maybe I'm wrong about the other's ideas.23:05
bbrittainParahSailin: but... thats like saying I'm gonna work at google. I'm not.23:05
bbrittainjust as likely23:05
nmz787why not?23:05
* bbrittain looks surprised23:05
nmz787google is cool too, they suck a lot too.23:06
bbrittainwelllllll, because they are actively bad.23:06
nmz787.ud same same but different23:06
thundaraAlso just not the most interesting place to be, too many smart people minds, not enough smart people problems23:07
bbrittainI'm more impressed with the people that work at FB tbh23:07
bbrittaina lot of the smart google people have left23:07
bbrittainbut FB is bad too23:07
bbrittainthey try to recruit me harder than google does too23:07
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bbrittainbut I'm like "I don't even have a FB", take what you will from that.23:08
ParahSailinyou turned down offers at goog and fb to be at ginkgo?23:08
bbrittainnah, recruiters23:09
bbrittainI don't like SV23:09
nmz787google is in OR too23:09
bbrittainso I left23:09
nmz787and many other places23:09
bbrittainplus like... I'm still in school. I don't know what I wanna do23:09
nmz787I think NYC, MD maybe23:09
bbrittainright. but actively evil23:09
nmz787:/23:10
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bbrittainParahSailin: I also turned down a job offer at mozilla :P23:11
bbrittainthat one was an offer23:11
nmz787.d same same but different23:11
nmz787.dict same same but different23:12
yoleauxnmz787: Sorry, that command (.d) crashed.23:12
nmz787.urban same same but different23:12
thundarabbrittain: When did you start getting offers? O.o23:12
nmz787oh well http://www.urbandictionary.com/define.php?term=same%20same%20but%20different23:12
thundaraOut of college / years of work?23:12
bbrittainthundara: well that one was after my internship there. the others were just recruiters. very different. one is awesome, the others are annoying as all hell23:13
bbrittainalso, I haven't graduate yet23:13
bbrittaingraduated*23:13
thundaraUndergrad? grad?23:13
bbrittainundergard23:14
bbrittaingrad23:14
bbrittainundergrad* sorry. I hate this keyboard23:14
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thundaraIf it's ginkgo now, where in the future?23:15
bbrittainno clue23:15
bbrittainI'll see if I like biotech23:15
bbrittainif not... maybe back to mozilla23:15
bbrittainI <3 mozilla23:16
thundaraMmm, that's me too, minus any actual experience in biotech :P23:16
bbrittainwell... first school probably23:16
bbrittainnmz787: kinda the same, but very different. mozilla == good for web. google == bad for web23:17
nmz787bbrittain: you should talk to www.deshawresearch.com if you still have time23:17
bbrittainfor?23:18
nmz787some real CS type fun23:18
bbrittainI'll look into it23:19
nmz787they actually put the tech in biotech23:19
nmz787or make it23:19
bbrittainaffiliated?23:20
nmz787nope23:20
nmz787I looked into them when I was living in NYC, but that was short-lived23:20
nmz787or maybe that was before I moved there23:20
bbrittainwell, I'd love to move back to NYC. I lived there for a summer too23:20
thundaranmz787: Are they still making their own supercomputers?23:21
nmz787I guess so, haven't checked up lately23:21
bbrittainwait. what do they MAKE?23:21
nmz787I think they may still be bootstrapping23:21
bbrittainlike.. how they have money?23:21
bbrittainoh23:21
bbrittainthe world is so weird23:21
nmz787like the silicon is there23:21
nmz787but they are coding and testing23:21
nmz787I assume making APIs and drumming up contracts for problem solving23:22
thundarabbrittain: D.E. Shaw was an early computer guy in trading world23:22
nmz787they may already have their own/other ideas that they have in the work pipeline23:22
nmz787not really sure23:22
thundaraMade tons of money with algortihms and shit23:22
bbrittainahhh23:22
nmz787I didn't even know that much thundara23:23
thundaraLast I'd heard, they made their own supercomputer to specially do protein folding / MD stuff23:23
thundaraBut that was a few years ago23:23
bbrittainand what does thundara do?23:23
thundaraStructural bio moving to synbio23:23
bbrittaincoool23:24
nmz787coming from programming and some electronics in high school, then into biotech and minor in bioinf at RIT, I like all the hardware and stuff too23:24
nmz787'full-stack' in a broader sense23:24
thundaraBleh, slow internet + irc proxy == lazy typing23:24
nmz787eww, I got that at the conference a lot23:24
thundarabbrittain: I don't know the synbio world very well though, hence me asking questions here and there all day :)23:24
bbrittainme too!23:25
nmz787but also it seemed like i had to switch between the android keyboards i have installed to get it to go through23:25
nmz787back and forth23:25
bbrittainor at least, that was my plan :P23:25
thundaraBut I guess that's tangential to the purpose of this channel23:25
bbrittainkinda23:25
nmz787synbio is pretty core to transhumanism23:25
nmz787like, i'd say doudble-digits of some theorhetical pie chart23:26
nmz787double*23:26
bbrittainI would agree with that23:26
bbrittainmaybe even as much as 25%23:26
nmz787https://careers.deshawresearch.com/recruit/JoiningDepartment.html23:26
bbrittainbut there is a lot of shit we need23:27
thundarabbrittain: I just want to be Crake23:27
nmz787'a limited number of internships are also available'23:27
bbrittainI know what you mean23:27
thundaraI don't even know what transhumanism even is, I just joined this channel because someone mentioned it elsewhere23:27
bbrittainbut like... do better23:27
* bbrittain cracks my knuckles. 23:27
bbrittainthere is so much ahead of you23:27
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bbrittainnmz787: maybe I'll hit them up in a year or so23:28
bbrittainI'm locked in for now :P23:28
bbrittainthundara: just read this for starters: https://en.wikipedia.org/wiki/Transhumanism23:28
thundaraI'm just going to pretend you all are part of MaddAdam23:29
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thylacinethundara: I call this nick then23:31
thylacineI mean. an extinct marsupial dog?!23:31
thylacinecan it get better23:31
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bbrittaintbh, I've only ever read the first book23:33
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nmz787thundara: but didn't they release some GMOs without proper safety protocol or something?23:41
* nmz787 sleeps23:41
thundaranmz787: ?23:42
thundaraIn the book?23:42
bbrittainthundara: lol yes. that is what he was saying23:44
* bbrittain also sleeps23:44
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