2015-03-11.log

--- Log opened Wed Mar 11 00:00:18 2015
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archelshttp://www.varidesk.com/stand-up-desks03:52
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chris_99kanzure, the other day you were wondering about transparent beehives - http://urbanbeelab.okno.be/doku.php04:27
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kanzure"brussels urban bee laboratory"06:22
kanzure"She has for decades been a recognized leader pioneering bee hives."06:22
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kanzure"Researchers at MIT have developed a method to stimulate brain tissue using external magnetic fields and injected magnetic nanoparticles — a technique allowing direct stimulation of neurons. The research, conducted by Polina Anikeeva, an assistant professor of materials science and engineering, graduate student Ritchie Chen, and three others, has been published in the journal Science."08:15
kanzure"In their study, the team injected magnetic iron oxide particles just 22 nanometers in diameter into the brain. When exposed to an external alternating magnetic field — which can penetrate deep inside biological tissues — these particles rapidly heat up. The resulting local temperature increase can then lead to neural activation by triggering heat-sensitive capsaicin receptors — the same proteins that the body uses to detect both ...08:15
kanzure... actual heat and the "heat" of spicy foods. (Capsaicin is the chemical that gives hot peppers their searing taste.) Anikeeva’s team used viral gene delivery to induce the sensitivity to heat in selected neurons in the brain. The particles, which have virtually no interaction with biological tissues except when heated, tend to remain where they’re placed, allowing for long-term treatment without the need for further invasive ...08:15
kanzure... procedures."08:15
kanzure"The magnetic nanoparticles also have been used for decades as contrast agents in MRI scans, so they are considered relatively safe in the human body."08:15
kanzure"The nanoparticles integrate into the tissue and remain largely intact," Anikeeva says. "Then, that region can be stimulated at will by externally applying an alternating magnetic field. The goal for us was to figure out whether we could deliver stimuli to the nervous system in a wireless and noninvasive way."08:15
kanzure"In addition to Anikeeva and Chen, the research team also included postdoc Gabriela Romero, graduate student Michael Christiansen, and undergraduate Alan Mohr"08:15
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archelsdo not want08:53
archelsif you're going through the trouble to express capsaicin recptors, why not just do optogenetics. geez08:53
kanzureoptogenetics is difficult without a glass window08:54
ParahSailinheat receptors are possibly more sensitive08:54
archelsif you're going to be as untargeted as magnetic stimulation, just a fibre glued into a hole in the skull will more than suffice08:57
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delinquentme... I/O .... CPU-bound .... and I think there are two others in this class of bottlnecks ...13:29
kanzurememory bound13:30
kanzurework bound: http://en.wikipedia.org/wiki/Proof-of-work_system13:31
kanzurewhich is sorta CPU i guess but sue me13:31
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delinquentmekanzure, thoughts on constraints for single instance mongoDB vrs multi-instance13:46
kanzuredo you really need mongodb?13:46
delinquentmethe constraint on mongo is we're in super research mode, schema is evolving ... and nobody in my work group has run migrations before =X13:47
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caternmaybe you should learn13:53
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kanzuredelinquentme: use alembic13:55
kanzuredelinquentme: migrations are easy to test13:55
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delinquentmekanzure,  +113:56
delinquentmehttp://alembic.readthedocs.org/en/latest/tutorial.html13:56
delinquentmekanzure, you'd not use south though huh ?13:56
kanzurei have used south when i am using django13:57
kanzurebut i am not often using django13:57
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kanzurewin 614:15
kanzuregaaaah14:15
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fennkanzure you know you want some boat anchors http://www.vintage-computer.com/vcforum/showthread.php?46693-Goodwill-s-Comp16:31
fennthose mac pluses are my inheritance16:32
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fennin 20 years i'll be on antiques roadshow saying "oh my gosh"16:32
chris_99heh16:33
fennweird, the NeXT guy was from kamloops16:34
fennSGI Onyx codename "Terminator"16:46
fennhttp://www.nekochan.net/wiki/File:Onyx.gif16:46
kanzureerr any boat anchor requests will have to be made more explicit than that16:47
kanzurebbl16:47
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fennmy dad is saving a bunch of mac pluses in the garage for unknown reasons16:53
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fennwell i couldn't find any solid information but it sounds like possibly the whole computer museum is up for grabs17:03
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kanzurefenn: why is your dad tossing all this?19:25
kanzurethis person is in kamloops?19:25
kanzurecc sheena19:25
fennno, the museum that's throwing out old (fancy) computers is in austin20:28
kanzureand your dad is in kamloops?20:33
kanzurewhy does he have a computer museum in his garage?20:34
justanotheruserkanzure: are you going to TBC20:39
fennsome random person who posted something on a forum is in kamloops20:40
fennmy dad does not have a computer museum20:40
kanzurejustanotheruser: what is TBC?20:40
justanotherusertexas bitcoin conference20:41
kanzuredefinitely not20:42
kanzurelast year was awful20:42
kanzurei do not want to associate myself with those people20:42
justanotheruserI get the impression it's a bit scammy20:43
justanotheruserare you talking about the hackathon?20:43
kanzurei stopped by the hackathon to see what everyone was up to, got trapped in a conversation with ripple labs :(20:43
justanotherusernot worth the trip then?20:44
justanotheruserI was thinking about going because of the hackathon prize of "$1 Million"20:44
justanotheruserbut it looks like the requirements are making an altcoin20:45
kanzuredon't go20:45
justanotheruserI wasn't going to pay20:46
justanotheruserthere lineup is way too weak to pay for20:46
justanotheruser*their20:46
kanzureat this point i suspect the only things worth going to are bitcoin-developer-related stuff20:47
kanzurespecifically, reference client devs20:47
kanzureanything else just seems like a waste of time :/20:47
justanotheruserwhat conferences are those? panama and?20:47
justanotheruser"The first Million Dollar Blockchain 2.0 Hackathon proved an amazing experience for the participants and added 4 powerful new protocols to the community, Storj.io, DERPA (Tor Coin), La Zooz, and Block Auth. "20:48
caternfenn: thanks for the forum link, I know some retro people who will be interested in this20:54
fennthat's ageist!20:55
* fenn looks around for a spare snark mark20:55
fennit's certainly sacrilege but i look at those reality engine boards and i can only think about what i'd do with the heatsinks20:56
caterni know some ancient dried up prunish burdens* (who are interested in retrocomputing)20:56
kanzurejustanotheruser: believe it or not, i don't have a good grasp of which bitcoin conferences the developers are all going to.... somehow these conferences are happening without my knowledge.20:57
fennthat's better. descriptive modifiers are always better than lumping people into categories20:57
kanzurejustanotheruser: which is weird because i am usually relentless about stalking conferences. that's how i get attendance lists and add to my stalkmatrix.20:57
kanzure"probabilistic stalking" ("yea they might know each other now")20:57
caternhey kanzure am I in your stalkmatrix20:57
kanzureeveryone is20:58
kanzureyou were first identified on 2014-04-2120:58
justanotheruserkanzure: when did I first come to this channel20:58
kanzure2013-12-24 perhaps20:58
justanotheruserhah wrong20:58
caternnice, that's probably when I offered to donate a VM inside an academic network to the paperbot cause20:58
caternwhich I hope you have noted down20:59
kanzure2013-11-1020:59
caternsince that offer is still open20:59
kanzureat this point i need more devleopers on paperbot20:59
caterndid gradstudentbot graduate21:00
kanzuregah i mean 2013-09-1021:00
kanzuregradstudentbot ran out of material21:00
justanotheruserehh maybe21:00
kanzurethere's only so much comedy i can write21:00
kanzurethe same joke said 5000 times gets boring21:00
kanzurealso i forgot how to launch him21:01
kanzureso there's that21:01
justanotheruserkanzure: I found this https://www.tumblr.com/search/shit%20grad%20students%20say21:01
caterndo you care to recruit developers? because I'm sure if you put the word out you might get some developers, it's a p. noble project21:01
kanzuregradstudentbot was based on https://www.youtube.com/watch?v=ovEghdXC4tE21:01
kanzurecatern: i am not in a position to recruit for paperbot so openly21:02
caternwhat if other people recruited for "a project for scraping papers" and referred trustworthy candidates to you21:03
justanotheruserbeing a grad student isn't *that* bad is it?21:03
justanotheruser*crickets*21:03
kanzurecatern: i would be happy to assign them work21:04
kanzureor they could do whatever they want, there's a lot of bugs21:04
kanzureor alternative directions21:04
justanotherusertheres got to be some shady mechanical turk that has access to a lot of papers21:04
kanzureaccess is not entirely the problem21:05
kanzureit's really hard to just host 50 TB of papers without getting sued21:05
justanotheruserask them to upload to mega and keep encrypted backups? That's all I've got21:06
caternkanzure: wait is that the primary issue? hosting?21:06
kanzureoh right.. i guess i should consider using megaupload21:06
kanzurecatern: pretty much21:06
justanotherusermego.co.nz21:06
kanzurecatern: there are moles in every publishing company totally willing to just dump terabytes upon terabytes of papers21:07
caternbittorrent?21:07
caterni dunno21:07
kanzurenobody seeds21:07
caternright21:07
kanzurelibgen has like 0.9 seeders21:07
catern:(21:07
caternhow big is libgen again?21:07
kanzure10 TB21:07
fennhttp://en.wikipedia.org/wiki/Seizure_of_Megaupload#/media/File:MegaUpload_FBI-Banner.jpg21:07
caternhmm21:07
kanzure12 ish21:07
fennalso they blew up his house with a swat team helicopter, or something21:07
kanzurefenn: nah they are back21:08
justanotheruserthat videos really depressing21:08
kanzurejustanotheruser: welcome to biology21:08
kanzurejustanotheruser: friends don't let friends go to school21:08
caternwait so21:08
caternwhy not just put all these papers on libgen?21:08
kanzurewell the dude died21:08
kanzurecentral point of failure21:08
kanzurenobody seeds21:08
caternwait really21:08
kanzureand their connection is 2 kbps21:09
caterni see21:09
caternwould new seeders be helpful?21:09
fenn2kbps is acceptable if there's no other option21:09
kanzurenew seeders would be helpful but i don't know if anyone is seeding anymore. someone should go look.21:09
fennhow would you even know? piratebay has no tracker21:10
fennthere are 1000 torrents to manually check21:10
kanzuremanually -> programmatically. using computer magics.21:10
caternugh21:12
caterni'd have to go browse the forums21:12
caternso russian21:12
caternterrifying21:12
* fenn mumble mumble "unlimited" backup service21:12
caterni mean there are definitely21:12
caternlots of21:12
caternactually21:13
kanzurerussians are quite resourceful21:13
kanzurethey have lived for like 100 years just on beets or something21:13
kanzureand all that science stuff.21:13
caternthere are lots of people who would be willing to provide bandwidth and storage if it wasn't risky21:13
kanzurepretty nice of them to give us a massive library21:13
kanzurewe're so book-poor21:13
fennhow nice of them to steal our publically funded research papers for us21:13
caterndoes anyone have a ready link to the libgen torrent file list21:14
kanzureyeah, they are providing a necessary public service21:14
kanzurehmm21:14
caternor like, an archive of all of the torrents21:14
kanzure"On December 29th, 2014, LibGen made an announcement http://genofond.org/viewtopic.php?f=8&t=7611 Their entire collection of scientific articles is being released to the torrent network. This repository contains over 35 million articles. Over 25TB of data."21:15
kanzureftp://libgen.in/scimag_torrent/21:15
fenncatern http://fennetic.net/irc/libgen_magnets_0-789.txt21:15
kanzure"The overall collection is split into archives of 1000 files each. Each torrent in this bundle contains 100 such archives. That means each torrent in this bundle contains 100,000 files. There are 350 torrent here -- making 35,000,000 files."21:16
catern0-789, is that all of them?21:16
kanzure"As with the main LibGen repository, this one also has an associated database of metadata. ftp://ftp.libgen.in/dbdumps/ "21:16
kanzure"Once again, the data itself is not readily accessible without the metadata database and a front end. Fortunately, karl_karlsson has once again created a portable version that requires no installation. (It does require set up.) http://genofond.org/viewtopic.php?f=17&t=607 "21:16
kanzure"A link to the front-end can be found here. (I have a problem with the CSS, but the search etc works fine). http://genofond.org/viewtopic.php?p=59793#p59793 "21:17
caternit's also important to maintain easy access to the data I guess21:17
fenn0-789 is 3 years old21:17
caternah, ok21:17
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kanzureempty :( ftp://ftp.libgen.in/scimag_torrent/21:18
kanzureoh, not empty21:18
kanzurefenn plz wget -m -np21:18
kanzureftp://ftp.libgen.org/dbdumps/scimag_dbbackup-YYYY-MM-DD.rar21:19
kanzurehttp://genofond.org/viewtopic.php?f=8&t=761121:19
fennwhat's the difference between the 1.3GB dumps and the 260MB dumps21:19
kanzure"RayMolacha wrote: An anecdote. When Aaron Swartz died two years ago, as sort of a memorial, I put up a torrent of 35GB of old JSTOR files." wait a sec i know this guy21:20
kanzurehow is this guy not gmaxwell?21:21
caternit would sure be nice have a not-md5-named dump21:21
fennoh i have other lists21:22
fennthey are much bigger21:23
caterni don't actually know what i just said, just going off the post kanzure just quoted21:23
fennuff 100kB/s upload21:26
kanzureyeah so those 35 TB sounds like basically humanity's best resource ever21:26
caternhm21:26
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kanzureso one idea is that this data set could be distributed for academic study of science itself21:29
kanzurefor example, data mining people21:29
kanzure"well i needed this data set so that i could perform research on 35 million samples"21:29
kanzuremany researchers are already running algorithms against large data sets from publishers21:30
kanzurebut this is the largest21:30
kanzureand no single publisher can offer more comprehensive data (although publishers can probably, presently, offer more friendly formats for their data)21:30
caternthat's clever21:30
kanzureanyway perhaps the big data academic community should be harassed until they do this21:30
caternthat seems a bit risky21:32
kanzurethey are already doing those studies21:33
kanzureand they also do studies on "malware"21:33
kanzurethey don't seem to get permission from the copyright owners of the malware21:33
caternheh21:33
kanzurefreaking double standards, man21:33
caternthe copyright owners of the malware also don't have lawyers21:33
caternprobably21:33
kanzureno, they are lawyers21:34
fennok since i couldn't download it from libgen.in, here's what i do have http://fennetic.net/irc/libgen_torrents_0-832.7z21:34
kanzureDRM malware is almost universally the result of lawyer involvement21:34
fenn(just file lists and hashes, not the actual data)21:34
caterni bet someone out there could think of clever solutions for this21:35
kanzurebill gates should just buy elsevier21:36
kanzurehow's that for fucking philanthropic bill21:36
* kanzure drops mic21:37
fennthere's also index 0-824.csv which has these fields: "ID","Title","VolumeInfo","Series","Periodical","Author","Year","Edition","Publisher","City","Pages","Language","Topic","Librar21:38
fenny","Issue","Identifier","ISSN","ASIN","UDC","LBC","DDC","LCC","Doi","Googlebookid","Commentary","DPI","Color","Cleaned","Orient21:38
fennation","Paginated","Scanned","Vector","Bookmarked","Searchable","Filesize","Extension","MD5","CRC32","eDonkey","AICH","SHA1","T21:38
fennTH","Generic","Filename","Visible","Locator","Local","TimeAdded","TimeLastModified","Coverurl"21:38
caterndoing things when the law is against you sure is annoying, you can't publicize to ask for help21:38
kanzurebuying elsevier is not against the law21:38
caternwe should make a chain of trust of people who aren't narcs21:38
fennand use snarks to do it?21:39
catern /s21:39
kanzurehttp://diyhpl.us/~bryan/papers2/bitcoin/snarks/21:39
fennSNARKS AGAINST NARCS - PROUDLY WANKING SINCE WORMS AGAINST NUCLEAR KILLERS21:39
kanzureperhaps something like a proof of narc21:40
kanzureor proof of narf21:40
fennproof of whorage21:40
fenni don't actually know what a snark is21:43
caternone important thing is to just21:44
caternget this dataset into as many hands as possible21:44
caternby that I mean disks21:45
caternbecause it's big enough that it actually takes time to get if you have some clever idea for doing something with it21:45
kanzurefenn: http://diyhpl.us/wiki/transcripts/mit-bitcoin-expo-2015/zerocash-and-zero-knowledge-succint-arguments-of-knowledge-libsnark/21:45
kanzure"There must be proof. We also want this to be zero knowledge. Bob must not learn a nything about Alice's transaction history by examining the proof. It must be non-interactive, which means that Bob can verify the correctness without interacting with any accountant digital or real. It must be posted on the ledger. It must be succinct. Small and easy to verify. Finally, we want the cryptographic property known as proof-of-knowledge. We ...21:45
kanzure... want to ensure that Alice knows the secret behind the transaction. What does it mean that there exists a signature? We want to know that Alice knows the signing key for such a signature"21:46
kanzure"All of those properties when taken together are actually impossible. So we relax this from being a proof to being an argument. It holds if cryptography is not broken. If you take all of them together now, a succinct non-interactive proof of knowledge, called snark. This is call zkSNARK when put together."21:46
fennshouldnt it be called "non interactive argument of knowledge" then21:46
kanzureask -wizards21:46
fennanyway how is this not just a signature21:47
fennalice signs whatever, therefore she has the signature21:47
fenner, therefore she has the key21:47
kanzureandytoshi: you want to take this one?21:48
caternmaybe as disk capacity grows this will become easier21:49
catern(distributing this dataset)21:49
kanzuredataset will grow only faster21:49
caterneh21:50
caternpaper output isn't growing exponentially is it?21:50
fennstorage is growing faster than publishing21:50
kanzurei think we are up to +10 million/year21:50
kanzurewait i might be off by an order of magnitude21:50
fennbandwidth is not keeping up though21:51
kanzurebetween 1 and 10 million/year21:51
caternno way is that going to grow exponentially21:51
kanzureas academia has its last death throws there will be a tremendous spike21:51
fenni dont get why the db dumps are ~10 times the size of the .csv file21:52
kanzurethey might be sql dumps21:52
kanzureso, syntax21:52
kanzure"INSERT INTO (blah, blah, blah) VALUES (blah, blah, blah)"21:53
fennthat compresses out pretty well21:54
fenni'm thinking maybe it has cover thumbnail images21:55
kanzurehttps://www.youtube.com/watch?v=hwyF176ToJ4&t=8s21:56
fennit's even better in german21:59
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fenneta 13h 45m isn't too bad i guess22:01
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kanzure_chimpanzee using a touch screen https://www.youtube.com/watch?v=JkNV0rSndJ022:05
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kanzure_chimpanzee using a touch screen https://www.youtube.com/watch?v=JkNV0rSndJ022:06
kanzure_"let's play pacman (with a chimpanzee)" https://www.youtube.com/watch?v=r7ttRaXlnfs22:07
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kanzure_that's the coolest job ever22:08
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fenni'm impressed with how well they play pacman, but the number sequence thing shows just how different we are22:12
fennunless that's just due to huge amounts of practice22:12
kanzure_when i am doing tasks like that i usually offload almost everything into motor planning and peripheral vision22:13
fenntime to take kanzure down to the primate lab for testing22:14
kanzure_they should breed the chimps based on pacman scores22:15
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sheenai only read the stuff around my mention, not stuff in the middle.22:40
sheenaanyone wanna teach me how/if i can overclock a laptop?22:41
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--- Log closed Thu Mar 12 00:00:19 2015

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