2015-10-19.log

--- Log opened Mon Oct 19 00:00:01 2015
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poppingtonicfenn: I watched it on Saturday. Much better than the book :)01:58
fennyep they actually managed to make a movie without injecting any ridiculously bad scientific errors02:00
fennsorta disappointed their computers ran MovieOS instead of some kind of linux though02:01
fennand most of the engineering problems were cut but i can see why they chose to do that02:03
fennwhat i don't really get is why they cut out mark watney's super snarky personality02:03
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poppingtonicThere were hints of it...02:12
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poppingtonicAnd in the book the OS was a version of Linux02:12
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poppingtonic.title http://link.springer.com/article/10.1007/s10670-014-9694-x02:17
yoleauxThe Epistemology of the Precautionary Principle: Two Puzzles Resolved - Springer02:17
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kanzureat least the hex editing scene was accurate05:47
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archelsOther maps represent action plans and goals, serving not as a sensory representation but as ‘source code’ that underlies behavior [73].06:17
archelssource code? seriously06:17
poppingtonicwhat's that from?06:18
archels"Flexible cognitive resources: competitive content maps for attention and memory"06:19
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kanzure"Physical principles for scalable neural recording" http://syntheticneurobiology.org/PDFs/13.10.marblestone.pdf06:47
kanzurecheck out page 6 table 106:47
kanzure"Summary of modalities, models, assumptions and conclusions" for various neural recording modalities06:49
kanzurewhat happened ot the voltage reporter contrast agent. why isn't that listed.06:53
poppingtonicwhat is spike sorting?06:53
poppingtonichttp://www.scholarpedia.org/article/Spike_sorting06:57
kanzurearchels: gimme some theoretical, speculative, but plausible things to make neurons (and brains) do to make them easier to record from06:57
kanzurehaving neurons and axons voluntarily grow up and around electrodes might be useful06:57
kanzurethere was a paper that we were reading in here that studied the outcome differences based on speed of impact of microelectrode array. fast insertion velocity caused less long-term damage. having brain experience zero long-term damage would be nice, but maybe requirs very slow 1 mm/day insertion rate.06:59
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kanzurethen there was the "jordan miller" idea (wasn't his idea, but i'm gonna call it his idea anyway) of growing neural tissue (using 3d printer deposition of cells) on an existing neural recording scaffold. but neural mass probably wont be doing the interesting things that anyone would want to be studying in the first place. (although i suppose studying of non-functional blobs of neural tissue is still a useful thing to do for now....)07:01
kanzureif direct contact with axons would be useful then you could prolly select for neurons that have axons that wrap around electrode tips like a helix.07:02
kanzureer, like a spiral07:02
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kanzurecurious to see max density of microparticle delivery to brain extracellular matrix. wonder if we can get uniform distribution of payloads.07:10
kanzure.title http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489602/07:10
yoleauxLocalized delivery of non-viral gene-bearing nanoparticles into the rat brain following focused ultrasound-mediated BBB opening07:10
kanzuresomeone was working on a similar microparticle delivery system (in tandem with focused ultrasound), but there was also something about receptor targeting for even further localization..07:12
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kanzureif the brain was flat then you wouldn't have the tissue depth problems that come with optogenetic recording07:19
fennyou also wouldn't have as much long-range communication07:21
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kanzurehm?07:23
fennneurons from opposite sides of sulci/gyri will communicate even though they are too far apart in cortical sheet distance07:28
kanzurehmm well if you had a two dimensional sheet of neurons then maybe you could correct for that with electronics07:31
kanzurebut probably need higher fidelity than we know how to do with current electronics07:32
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kanzurewhat we really need is brain surface display of chromatophores07:34
kanzure"Cephalopods such as the octopus have complex chromatophore organs controlled by muscles to achieve this, whereas vertebrates such as chameleons generate a similar effect by cell signalling. Such signals can be hormones or neurotransmitters and may be initiated by changes in mood, temperature, stress or visible changes in the local environment."07:39
fenn"Institute for the Study of the Neurotypical" http://isnt.autistics.org/index.html07:39
kanzurecool so we already have cell-signalling chromatophores07:39
fennjust glue a cuttlefish to your brain. they're called cephalopods for a reason07:41
kanzureare you mocking me :P07:43
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abetuskPeto's paradox: http://www.nytimes.com/2015/10/13/science/why-elephants-get-less-cancer.html?referer&_r=2&utm_content=buffer89a10&utm_medium=social&utm_source=twitter.com&utm_campaign=buffer07:51
nshis this accessible for anyone? (should be ~16Mb pdf): http://booksc.org/dl/36029940/849731  -->   http://libgen.io/scimag/get.php?doi=10.1142/9789812831323_002307:55
nshactually, i think i've got it07:55
nshjust at a snail's pace07:56
kanzurehttps://littlemaninmyhead.wordpress.com/2015/09/28/so-you-want-to-learn-to-break-ciphers/08:09
poppingtonic"After my reply, the author modified his design and sent it for publication, carefully making sure that the sci.crypt people didn’t see his updated design in the time frame of the publication attempt.  The author claims that the paper was published (see bottom of page), but the updated paper made no acknowledgement of the insecurity of the previous version or my finding.  The evidence for the security in the updated paper is pret08:29
poppingtonicHaha!08:29
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poppingtonicIn a "it's actually not funny" way.08:44
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kanzureshort guide to servo (the browser) https://gist.github.com/paulrouget/2f00941e6e82aeecad2309:37
chris_99nmz787, i'm thinking of possibly getting one of the spectrometers like yours, just wondering, did you pay $200, for the grating that has a 3nm res09:39
kanzurehttp://www.symmetrymagazine.org/article/october-2015/is-the-universe-getting-bigger-or-am-i-getting-smaller09:39
kanzure"Control of REM sleep by ventral medulla GABAergic neurons" http://www.nature.com/nature/journal/v526/n7573/full/nature14979.html http://news.berkeley.edu/2015/10/15/researchers-find-neural-switch-that-turns-dreams-on-and-off/09:39
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poppingtonickanzure: Which of the modalities in the summary you posted are you interested in tackling?09:47
kanzuremy intention was only to test which things fall out easily if i apply the "speculative biology is allowed" concept09:49
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kanzureteratoma comments from other day were result of me looking for any animals that have bone in their brain. so far no results.09:58
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maakukanzure: where was that avenue of research leading you?10:54
kanzurehuh?10:59
kanzurethe value of speculation is that most solutions are wrong and broken, but some can be reappropriated for similar purposes that wouldn't have been otherwise considered.11:00
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kuudeshmm... canadian elections tonight, but no predictions on predictionbook? :-/11:48
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kanzurehttp://www.technologyreview.com/view/542601/the-science-surrounding-cryonics/13:14
kanzure"successfully cryopreserving and later transplanting sheep ovaries and rat limbs, and routinely recovering rabbit kidneys after cooling to -45 °C. "13:15
kanzure"carrying out a Defense Department-funded clinical trial to induce profound hypothermia (body temperatures of less than 10 °C) in critically injured trauma victims"13:15
kanzure.title http://echo.jpl.nasa.gov/asteroids/2009FD/2009FD_planning.html13:22
yoleaux2009 FD and 2015 TB14513:22
kanzurehttp://www.anishathalye.com/2015/02/07/an-asynchronous-shell-prompt/13:24
kanzurehttp://blogs.lse.ac.uk/impactofsocialsciences/2015/09/08/wikipedia-amplifying-impact-of-open-access/13:24
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poppingtonic"On the other hand, the fully functional brain self-organizes from a14:13
poppingtonicless-structured precursor during development and learning. If we14:13
poppingtonicunderstood the rules governing these self-organization processes, we14:13
poppingtoniccould begin to know which aspects of the brain’s complexity are14:13
poppingtonicrelevant or ir- relevant, at different scales and in different types14:13
poppingtonicof neural computation. The apparent complexity will likely continue to14:13
poppingtonicpile on, however, at least until we understand the principles14:13
poppingtonicunderlying brains and minds much better, so that we know something14:13
poppingtonicabout what to look for and what to expect.14:13
poppingtonic"14:13
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poppingtonic"15:42
poppingtonicAgainst the background of longstanding “uniformist” vs. “specialist”15:42
poppingtonicdebates, and in contrast to accounts under which functional15:42
poppingtonicspecialization derives principally from di ferences in input, we argue15:42
poppingtonicfor a conception of the cortex as a computationally heterogeneous15:42
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kanzuresomeone randomly mentioned to me 4698 gene yeast paper from http://gnusha.org/logs/2015-10-12.log16:56
kanzurebut used some description about fasting that i don't remember from the paper16:56
kanzurehttp://www.cell.com/cell-metabolism/abstract/S1550-4131%2815%2900465-916:56
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maakukanzure: you have need for a fullstack web engineer with a bio engineering background?17:29
kanzurenot directly at the moment, but i know a few places to send one17:32
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kanzurestar wars trailer https://www.youtube.com/watch?v=sGbxmsDFVnE19:29
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catern"i will finish, what you started" the fight of PROOOOOOOOTOOOOOOOOOOMAAAAAAAAAAAN19:33
drethelinso is the implication that luke becomes newvader there19:34
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kanzuredrethelin: nope, different actor19:41
kanzurethat video even shows that character unmasked, sooo... no.19:41
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