2015-03-29.log

--- Log opened Sun Mar 29 00:00:36 2015
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kanzurebeep.05:50
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streetynmz787: thanks for the pointer, I've been considering starting a project recently that the esp8266 looked good for07:11
archelsnmz787: are you driving Peltiers or motors?07:24
archelsin case of the former I can give you an efficiency report in a few weeks07:24
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kanzure.title http://www.bionet.ee.columbia.edu/projects/neurokernel08:22
yoleauxNeurokernel: Emulating the Fruit Fly Brain | Bionet08:22
kanzure(same as the last time neurokernel was mentioned in here)08:22
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chris_99noones ever seen anything about a homemade mass spectrometer out of interest?10:14
streetychris_99: seen a few papers on minimal mass spec but nothing homemade as such10:23
streetymost of the ones I've seen weren't viable for proteomics so I didn't pay them too much attention10:23
chris_99ah, cheers for the heads up, yeah i haven't seen anything from a little googling either10:24
streetyit would be extremely nice10:25
streetythinking of working on one?10:25
chris_99well i saw a 2nd hand one that would have been cool, but i don't have the space for one atm alas10:26
streetythey are big beasts10:26
chris_99mmm10:26
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chris_99check this one! - http://www.purdue.edu/uns/x/2009a/090121CooksMelamine.html10:30
streetyhttp://pubs.rsc.org/en/content/articlelanding/2010/an/b923427f#!divAbstract is their publication10:35
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chris_99cheers lets see if paperbot can get it10:36
chris_99paperbot: http://pubs.rsc.org/en/content/articlelanding/2010/an/b923427f#!divAbstract10:36
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/Direct%20analysis%20of%20melamine%20in%20complex%20matrices%20using%20a%20handheld%20mass%20spectrometer.pdf10:36
chris_99yay well done paperbot10:37
streetyI didn't realize paperbot was working again10:37
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nmz787archels: got some motors and peltiers... have had some projects in mind but finding the right project to start on and finding the right drivers has been something I've been working on for a while10:45
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nmz787chris_99: i've /thought/ of what a home-made mass-spec might be... but the ion/electron optics are a huge undertaking I'm pretty sure. SEMs from like 30-50 years ago couldn't get much past ~3500X magnification from what I've heard... so if the column was applied to a mass-spec I think that measn the mass-to-charge ratio would have limited resolution. That said, I was thinking a SEM or FIB column might be applicable to a hacked together ...10:48
nmz787... instrument.10:48
nmz787not sure if the quadrapol/octopole would be easier to make on a MEMS scale... I've known there have been efforts for MEMS mass-spec for a few years, not sure how long those efforts have been underway in general though.10:49
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chris_99that sounds interesting10:53
chris_99theres more variants than i thought10:54
nmz787the mass-spec is one thing... the way to get the sample in a gas-phase is another (someone mentioned proteomics, which needs a much more advanced 'atomizer'/'gasifier' (not sure the general term for this piece))10:57
chris_99could you use ultrasound to create a vapour or is that not good enough for some reason10:58
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thundarachris_99: Most modern mass spec instruments also nee a fair bit of electrical power / pumps to maintain the vacuum, along with liquid nitrogen to keep things cool11:02
thundaraWould be pretty hard to do cheaply in a diy setting11:02
nmz787yeah they sell foggers for frogs and stuff at pet stores11:02
nmz787thundara: newish FIB/SEM can run on 110V 15A circuits11:02
chris_99i didn't realise they needed liquid nitrogen11:02
nmz787I don't remember the mass-spec I used recently needing any LN211:03
thundaraThis is for orbitrap ones11:03
thundaraDepends on what you need it for though, proteomics would be pretty hard to do cheaply11:04
thundaraBut if it's just testing 1 sample's mass, easier11:05
thundaraA lot of the HT proteomics stuff works with MS^2 though, which needs a gas (He / N) for ion fragmentation11:06
thundaraThere's also ECD (electron bombardment), but I'm told that's even more expensive (in terms of instrument cost)11:06
thundaraI've hear word of a microfluidics device for measuring molecules' mass/charge, but I think it was more a proof-of-concept than as a fully-featured device with high sensitivity / speed / MS^n11:08
thundaraOh, you linked that above >_<11:11
streetywhen I've done mass spec proteomics in the past it was MALDI or electrospray ionisation11:29
streetyThe apparatus didn't seem that complex11:29
streetyFT-ICR instruments need liquid nitrogen and helium - orbitraps seem to work similarly so it would make sense they also need cryogenic cooling11:33
streetyuseful for discovery but if you know what you are looking for simpler instruments should be viable11:33
thundaraThat's only part of the method though, you have sample prep -> chromatography -> ionization (ESI/MALDI) -> filtering -> fragmentation -> measurement11:34
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thundaraYeah, if you have a simple sample or know what you're looking for, it's easier11:35
delinquentmeHOY.11:35
thundaraBut would be hard to replicate a full proteomics setup in a diy setting11:36
thundaraOr at least, you'd want a different approach (Quadrupoles / TOF removes the need for cooling, iirc, unsure what is cheap / good for fragmentation though)11:37
t12orbitraps dont need cooling11:38
streetythe chromatography would be the most challenging part prior to the MS11:38
thundarat12: Erm, yeah, you're right, N gas is for the collision gas and some other parts11:40
t12fancy mass specs are11:40
thundarahttp://planetorbitrap.com/download.php?filename=4fb4392c31382.pdf11:40
delinquentmeTIL orbitrap11:40
t12pretty painful to keep going11:40
delinquentmeUGH. I love this channel11:40
t12easier to deal with a core facility11:40
thundaraYep11:41
t12acqual quadrapoles arent TOO complicated11:41
t12but way untrivial11:41
t12easiest diy bet is to frakenstein up various junked mass specs11:42
thundaraI'm told the strict tolerances of the machine make it expensive, since having magnetic fields out of alignment gives you incorrect measurements / ions banging into walls11:42
t12well you calibrate all that out11:42
t12at some point mechanical becomes limiting i believe11:42
t12i have a scrap quadrapole around here somewhere11:43
thundaraOnly within some tolerance, no? Shielding / vacuum are issues too11:43
thundaraBut maybe this is all propaganda to convince me that mass specs should cost six-seven figures >_>11:44
delinquentmet12 thundara where are you guys geographically11:44
delinquentme?11:44
t12https://www.dropbox.com/sc/28n3xpwjdvg93hb/AADuxPlutvSv2sLsG0_rj-r0a11:44
t12theres a triple quad11:44
t12in a bathtub11:44
t12sf11:45
t12mass specs are pretty impressively built11:45
t12no single part is really THAT expensive11:46
t12except maybe an orbitrap itself11:46
t12or the magnet in an ft11:46
t12but theres just lots of stuff11:46
kanzurehave you seen nmz787's spectrometer design?11:46
t12neg11:47
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thundaraYeah, the core device is mostly machined metal and electronics11:48
thundaraNeg^^11:48
t12i have a junk triple quad i need to put somewhere11:48
t12it might work11:48
t12needs turbo/controller rework11:49
t12been offline at at atmosphere for a few years though11:49
thundaraLab has an old one lying around that I was planning to dissect over the summer11:49
streetydo you have a link kanzure?11:49
kanzurehttps://github.com/nmz787/open-spectrometer11:50
streetythanks11:50
delinquentmet12 you're in sf? how don't I know you irl?11:50
t12unknown11:50
delinquentmecore speciality?11:50
t12god i dunno at this point11:51
delinquentme<< servers, web bits of rbotics, python talking shit11:51
t12previously hpc stuff11:51
delinquentmehentai11:51
t12right now i do microscope/lab automation11:51
t12some engineering11:51
streetyah, that's a spectrophotometer, not a mass spectrometer11:51
t12some machining11:51
delinquentmet12 can I ask for who?11:51
t12a little electronics/reverseengineering11:51
thundaraAutomation at a company? or academic11:51
t12company11:51
delinquentmeim currently working in battery / energy grid space ... automation + bidding11:52
t12holding back name for now11:52
t12ahh like11:52
delinquentmet12 you wanna come hangout?11:52
t12that weird ca energy storage mandate thing11:52
delinquentmesmoke some crack ?11:52
t12lol11:52
delinquentmechill out ?11:52
delinquentmecool!11:52
delinquentmet12 if you do the FB thing11:52
t12ya sure sometime11:52
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delinquentmehmm im not on native irc client ...11:53
delinquentmehttps://www.facebook.com/delinquentme11:53
delinquentmethere we go11:53
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t12https://www.youtube.com/watch?v=0_x73hpl6io&t=2511:53
delinquentmeyeah add me up if you want.11:54
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kanzure.title11:55
yoleauxWolf of Wall St - Smoking Crack - YouTube11:55
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thundarat12: I'm curious if you could ECD cheaply for the fragmentation step11:56
thundaraSince it's expensive on for-sale instruments, but could just be a patent thing11:56
thundaraUnsure about upkeep / eletricity costs for ECD11:57
t12i've seen installs of some custom ones11:57
t12i dont think its that bad, its more a matter of having the rest of the stuff to install it in11:58
delinquentmeha! can I like things over IRC? not yet hahaha11:58
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thundaraAh, yeah, I see "electrons" and think "those are cheap!", but I don't really know what actually goes into the method11:59
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nmz787haha, quadrapole in a bathtub12:53
* nmz787 imagines the white-rabbit scene of fear and loathing except with a quadrupole instead of a radio12:54
chris_99haha12:55
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chris_99i'm just looking at http://en.wikipedia.org/wiki/Coulter_counter again, could you possible just use a microfluidic slide to do it13:04
nmz787yep13:06
nmz787using those integrated spectrum analyzer chips13:06
nmz787this or one of it's similar variants (found on ebay in modules, but can have cheap non-working crystals sometimes) http://www.analog.com/en/digital-to-analog-converters/direct-digital-synthesis-dds/ad5933/products/product.html13:07
nmz787we got someone in here who was working on them13:07
nmz787i can't remember their name13:07
chris_99i'm confused, how does a spec analyser relate to this? or is that a response to something else13:07
nmz787http://gnusha.org/logs/2014-11-21.log13:08
nmz787nickjohnson: ^13:08
nmz787you were there chris_99 :P13:09
nmz787you get a bode plot13:09
nmz787which is your 'fingerprint'13:09
nmz787consider your sample an antenna13:09
nmz787or a signal filter13:09
nmz787you get the response/lack-thereof of it13:09
nmz787and for faster detection, you don't scan all the freqs, you use one or a range that is indicative/unique enough for your target of interest13:11
delinquentmekanzuragi dataframe = convert_start_time(dataframe)13:11
nmz787and the common signal noises that can influence other freqs response13:11
delinquentmedis. does this rewrite that object ... ?13:11
chris_99i thought you just detect 'pulses' nmz787, which are created as a change in resistance13:12
nmz787you could probably also do something with fourier transforms, to use only square waves with diff slew-rate as input to the sample... since square waves are composed of infinite-series of sines13:14
nickjohnsonThat's me, but doing a bode plot is different from having a spectrum analyzer.13:14
nickjohnsonnmz787: Square waves only have odd harmonics. A noise source is a more common approach.13:14
nmz787chris_99: yeah but impedance is resistance but across more freqs13:14
nmz787resistance is impedance at 0Hz13:14
chris_99ah oh yeah it's impedance13:15
nmz787nickjohnson: it was just an idea that came to mind... i'm no expert, but thanks for the tip for more investigation!13:15
nmz787g2g drive into town13:15
nickjohnsonnmz787: In theory if you feed in white noise, what you get out of the FFT is your response graph13:15
chris_99nickjohnson, i see your project is funded :)13:22
chris_99*product13:22
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streetythe millipore scepter is not much more than a disposable microfluidic chip13:25
streetynice concept, I really should try to get our device up and running again13:26
chris_99oh not seen that13:27
chris_99so it sucks up the cells and does the coulter counting thing?13:27
streetyyeah13:27
chris_99neat13:27
streetyour device doesn't suck though which is "apparently" fixed by a firmware update but we've lost the "usb2" cable that isn't like any usb cable I have13:28
fennchris_99: the closest i've seen is brian hemond's paper "Development and performance of a miniature, low cost mass spectrometer" http://dspace.mit.edu/handle/1721.1/67584 http://fennetic.net/irc/mass_spectrometer_miniature_low_cost_brian_hemond.pdf  although he doesn't provide any code or actual schematics (despite them existing in a non-public git repo here: http://web.mit.edu/bhemond/git/13:29
fenni'm guessing glass-blowing would be a main technology for the DIYer without a full machine shop13:30
fenni dunno why the hell everyone immediately assumed you would be using a low cost DIY mass spec for proteomics13:33
chris_99cheers fenn13:34
chris_99that seems really interesting!13:35
streetyI think I brought up proteomics - just wishful thinking13:37
nickjohnsonchris_99: Yup! :)13:38
fennone nice thing a mass spec can do is unambiguous detection of elements13:38
nickjohnsonchris_99: Just finished redesigning part of the input frontend to support higher counting rates. :)13:38
streetywhat's the product?13:39
chris_99whatcha mean by counting rate13:39
nickjohnsonstreety: kickstarter.com/projects/nickjohnson/tsunami13:40
nickjohnsonchris_99: For frequency counting on the input13:40
chris_99oh gotcha, cool13:40
nickjohnsonThe comparator is still limited - theoretically - to 4MHz, though I'm fairly sure it goes faster13:41
nickjohnsonBut I replaced the XOR IC with a greenpak (tiny little programmable gate array from silego) for an extra $0.08, and was able to add a 2 bit selectable divider to the frontend13:41
nickjohnsonSo the AVR pin gets the input frequency divided by 1, 16, 256, or 409613:41
chris_99XOR IC, as in logical xor, or something else13:42
nickjohnsonLogical xor13:43
nickjohnsonThe Tsunami does phase detection by XORing the input signal with the generated signal, then using an RC filter to take the average13:43
chris_99dumb question, what does phase detection mean exactly13:45
streetylooks like an interesting project - congrats on your funding success13:46
nickjohnsonstreety: Thanks :)13:46
nickjohnsonchris_99: So, you generate a signal, feed it through some stuff (say, an audio amp), and get it back13:46
nickjohnsonIt'll be attenuated somewhat, and it'll also be delayed13:46
nickjohnsonThe delay, as a proportion of the waveform, is the phase shift13:46
streetywould I be right in thinking it has some of the same use cases as the red pitaya that was on kickstarter as while back?13:47
chris_99aha that makes sense13:47
nickjohnsonYes, but this is cheaper, lower frequency, and easier to program.13:47
chris_99you could release a high freq. one too ;)13:47
nickjohnsonchris_99: So, I was paying $0.42 for a dedicated single gate XOR IC. But I realised I could swap it out for a greenpak3 for $0.50, and have a little programmable logic array13:48
nickjohnsonchris_99: I've thought about it. I know someone who's working on something similar in fact. But then you're competing with the red pitaya.13:48
chris_99ahh13:48
chris_99neat, what kind of stuff can you do with that programmable chip13:48
chris_99is it similar to an FPGA13:48
nickjohnsonLots. It's got a bunch of lookup tables, a bunch of counters, some d-flipflops, some analog comparators13:48
nickjohnsonYes, just much smaller13:48
nickjohnsonAnd one-time programmable13:48
chris_99oh, it has eeprom then?13:49
nickjohnsonI think of them as modern versions of GALs/PALs13:49
nickjohnsonYeah. All you need is the chip itself and one bypass cap.13:49
chris_99that sounds really interesting13:49
chris_99i'll check that out13:49
nickjohnsonHere's the design I put together for the Tsunami: http://i.imgur.com/L6qsitL.png13:49
nickjohnsonOh, and the dev kit is $60, and comes with a bunch of samples. It's really easy to work with, too13:49
chris_99oh is that the way you program it via a flow chart kind of thing?13:49
nickjohnsonYeah, pretty much13:50
nickjohnsonOne day when I have spare time, I'm going to write a VHDL compiler for it :)13:50
nickjohnsonThe registers are extensively documented13:50
chris_99heh that'd be neat13:50
chris_99what pin package does it have13:51
nickjohnsonThat's the only downside: they're tiny13:51
chris_99bugger :(13:51
nickjohnson0.4mm QFNs13:51
chris_99i only have a normal soldering iron13:51
nickjohnsonDo you have a hot air gun?13:51
nickjohnson(If not, why not? They're $20 on ebay :P)13:52
chris_99no i don't heh, i should buy one13:52
nickjohnsonYou could do it with an iron, but a hot air gun would be easier13:52
nickjohnsonI've been thinking about putting together little dip breakouts13:52
chris_99with QFN don't you need to apply pasted13:52
chris_99*paste13:52
chris_99and reflow?13:52
nickjohnsonThey could be awesome for retro computing enthusiasts - emulate any <18 pin 7400 series IC.13:52
chris_99heh that'd be cool13:52
nickjohnsonWell, it helps. But you can instead tin the pads with your regular iron, add some flux, then heat it up with the hot air.13:52
chris_99ah hadn't thought of that13:53
chris_99i got a qfn adapter for an ADC i got13:53
fennemulate any retro computer13:53
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streetyare the cheap hot air guns worth it? how good are they for SMD?14:01
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nickjohnsonstreety: They're absolutely fine for SMD.14:02
nickjohnsonI use mine all the time and feel no need to upgrade, personally.14:02
nickjohnsonI noted with amusement that dave from eevblog uses one too :P14:02
chris_99i just thought i do have one of those air guns we use for a BBQ sometimes, i dunno if i could use that though14:02
streetyI might buy one and some cheap chips, give it a try14:03
chris_99sounds like a good plan14:04
streetyis it just take PCB, apply solder paste, place chip, apply heat?14:04
nickjohnsonchris_99: I wouldn't risk it. Temperature control is vital.14:06
nickjohnsonstreety: Yes, though you can use regular solder and an iron, followed by flux, in place of paste14:06
chris_99yeah i don't really want BBQ'd chips14:06
streetyare there advantages to either approach?14:07
nickjohnsonstreety: Solder paste, IME, works best with a stencil, though you can get those nice and cheap, or with very careful dispensing.14:09
nickjohnsonSolder and flux is self-limiting - you can't add too much solder - but it's slower and requires more attention than using a stencil14:10
* nickjohnson -> bed14:10
chris_99i saw something really neat recently that autodispenced paste14:10
chris_99night14:10
streetythanks nickjohnson, sleep well14:10
nickjohnson'night14:10
streetyI saw on dirtypcb that they offer stencils as an option, now I know why14:11
chris_99https://www.kickstarter.com/projects/voltera/voltera-your-circuit-board-prototyping-machine/description14:11
chris_99(not that i could afford to spend that much, but pretty cool)14:12
streetythere was another one I saw at the maker faire in New York last year, pick and place together with applying solder paste14:14
streetyagain, not cheap14:14
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streetywould love to see one at a local makerspace though14:14
nickjohnsonchris_99: https://www.tindie.com/products/Pieco/paste-press/14:15
chris_99yeah i've seen the guns :)14:15
fennthis looks like the sort of thing one could easily make on a 3d printer14:17
chris_99mmm14:17
chris_99it does14:17
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t12here have some troll bait14:26
t12http://amormundi.blogspot.com/2012/12/is-transhumanism-racist.html14:26
andytoshiwhois carissa14:29
andytoshioops, i didn't mean to draw attention to quiet people14:29
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carissaI am Bryan's sister, just here lurking.14:35
andytoshihi carissa. i was at lunch with bryan today, he mentioned you were here14:36
andytoshiwe have met before, i'm andrew, i had thanksgiving with your family14:36
kanzuret12: please no14:38
kanzuredae carrico is a known moron and must be avoided at all costs14:39
kanzure*dale carrico14:39
kanzuret12: and also i'll kickban you, so that is extra incentive to not bother us with dale carrico things14:40
t12sorry was just going for entertainment!14:41
kanzurethat's some weird entertainment man14:41
kanzureyou should also avoid james hughes14:42
t12you could make tumblr meme generator out of14:47
t12http://upload.wikimedia.org/wikipedia/commons/thumb/c/cd/James-Hughes---rays.jpg/1024px-James-Hughes---rays.jpg14:47
t12very the correct aesthetic14:47
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chris_99.title https://www.youtube.com/watch?v=1gu3z7w4Vc814:55
yoleauxFesto – eMotionButterflies (English) - YouTube14:55
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fennvery appropriate that the image has gratuitious noise added to it15:02
fennt12 i want to frame that photo of the mass spec core in the bath tub15:04
t12i can take a better one15:05
fenntell people it's high concept art photography15:05
t12though i kinda cleaned the bathtub up15:05
t12i have some nice pictures of it somewhere15:06
t12hum no full length ones15:18
t12https://www.dropbox.com/sc/0augzr1j7q5tfhb/AACjOrQ4smQzyX8lta3qR5d3a15:18
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nmz787that tri-quad-pole in a bathtub might go on a trial run as my work desktop background15:46
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t12https://www.dropbox.com/s/j06rfhyi1el1r5x/20150329-20150329-_3290007.jpg?dl=016:34
t12heres a better picture16:34
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thundarat12: https://lh5.googleusercontent.com/-o0OhYkHi55k/VMHvlQRqsNI/AAAAAAAABis/avWx66KVVyM/w2960-h1665-no/20150121_162914.jpg The one I want to dissect16:36
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t12qstar?16:42
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t12they're fun to take apart16:44
t12if its destined to the trash save the stainless main chamber16:44
t12they scrap out for alot16:44
t12also the electronics are likely resaleable to a 3rd party repair shop16:45
t12i never had luck actually doing that, but also didnt try too hard16:45
t12rebuild houses will buy turbos16:48
t12and the controllers16:48
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kiba-immlehi16:56
kiba-immlehow to request a paper from the paper bot?16:56
kiba-immle!request https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923616:56
kiba-immle.request https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923616:56
kiba-immle:-/16:56
kiba-immle!paperbot https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923616:57
kiba-immle.paperbot https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923616:58
kiba-immle!fetch https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923616:58
kiba-immleshiiiit16:58
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fennpaperbot: https://www.thieme-connect.com/DOI/DOI?10.1055/s-2000-923617:03
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/afd2fb9d816093c8e49aaf45ef2b9d66.txt17:04
n_benthathanks fenn! it's been a while and i had forgotten >.<17:04
n_benthapaperbot: https://www.thieme-connect.com/products/ejournals/html/10.1055/s-2000-923617:05
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/1236ceffe65c63713f1e0ec8ef68729c.txt17:06
fennpaperbot: http://www.thieme-connect.com/products/ejournals/pdf/10.1055%2Fs-2000-9236.pdf17:06
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/4153005c741d4f711f445a1a45370b09.txt17:07
fennpaperbot: http://www.thieme-connect.com/products/ejournals/pdf/10.1055/s-2000-9236.pdf17:07
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/952c5c05aa68b0065fcfa2d681bad700.txt17:08
fenni guess that's a bad url17:08
fennalso paperbot can't get it, sorry17:09
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n_benthaok thanks17:11
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thundarat12: Good to know, haha17:16
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n_benthapaperbot: http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=1989297519:31
n_benthahey nootropics are in the discussion! awesome :D19:32
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/Hematopoietic%20Stem%20Cell%20Gene%20Therapy%20with%20a%20Lentiviral%20Vector%20in%20X-Linked%20Adrenoleukodystrophy.pdf19:32
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nmz787met this guy's son tonight http://www.mse.ncsu.edu/research/labean/20:29
kanzure.title20:40
yoleauxLaBean Research Group20:40
kanzure"We use biopolymers"20:40
kanzurelooks like lot of winfree/rothemund stuff20:41
nmz787paperbot: http://link.springer.com/chapter/10.1007/978-3-540-24635-0_1220:42
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/b2f98ddd0b9c24c5a5528fe660670b32.txt20:43
nmz787yeah, you recognize any of the papers?20:43
kanzurenot exactly, but the topics are quite similar, just more heavy metals i guess20:44
nmz787http://diyhpl.us/~nmz787/pdf/Aspects_Of_Molecular_Computing.pdf20:48
nmz787DNA-crypto chapter therewithin20:48
nmz787one-time pads20:52
nmz787hmm20:52
kanzurenot really one-time, you probably have millions of dna molecules floating around with the same sequence20:53
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nmz787"Finally, adding ligase enzyme results in a continuous reporter strand R that runs through the entire assembly. If bi = ai ⊕ a i, for i = 1,...,n, then the reporter R = a1a2 ...an.a 1a 2 ...a n.b1b2 ...bn. The reporter strand is shown as a dotted line in Figure 3. This strand may be extracted by first melting apart the hydrogen bonding between strands and then purifying by polyacrylamide gel electrophoresis. It contains the input ...21:01
nmz787... message, the encryption key, and the ciphertext all linearly concatenated. The ciphertext can be excised using a restriction endonuclease if a cleavage site is encoded between the a0 and b1 tiles. Alternatively the reporter strand could incorporate a nick at that point by using an unphosphorylated oligo between those tiles. The ciphertext could then be gel purified since its length would be half that of the remaining sequence. This may ...21:01
nmz787... then be stored in a compact form and sent to a destination."21:01
nmz787Fig 4 is pretty cool21:04
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n_benthapaperbot: http://onlinelibrary.wiley.com/wol1/doi/10.1111/cen.12730/full22:03
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/d2f63091c82e303d33e97b9356f12ac3.txt22:04
n_benthapaperbot: http://onlinelibrary.wiley.com/doi/10.1111/cen.12730/epdf22:05
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/7cd38a745c8de3f2459dc73dae607a57.txt22:05
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nmz787.tell chris_99 congrats man! http://hackaday.com/2015/03/29/measuring-alcohol-content-with-time-of-flight-sensors/22:20
yoleauxnmz787: I'll pass your message to chris_99.22:20
nmz787.tell chris_99 this seems like the best/most-constructive comment http://en.wikipedia.org/wiki/Oscillating_U-tube22:23
yoleauxnmz787: I'll pass your message to chris_99.22:23
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