2014-04-25.log

--- Log opened Fri Apr 25 00:00:06 2014
--- Day changed Fri Apr 25 2014
entelechiospaperbot has been bust for a while now00:00
fennit's just science magazine00:00
fennwhich is stupid because i get like 3 copies of it00:00
entelechiossec00:02
fennso anyway CD47 kills cancer and promotes angiogenesis00:02
entelechiostrying alternative methods00:02
entelechioshttp://ezproxy.morningside.edu:2535/content/1/3/3ra7.full.pdf?sid=f006aa6d-dc9c-42c1-ba01-08cc2df5fd4300:02
entelechiosnope00:02
gradstudentbotHeh, undergrads.00:02
entelechiosoh wait00:02
entelechiosthis is free00:03
jrayhawkhaha00:03
jrayhawki missed gradstudentbot00:03
gradstudentbotI don't think my PI remembers me.00:03
fennoh, "00:03
fennAs a service to the community, AAAS/ Science has made this article free with registration."00:03
entelechiosthis is what ive got for my central american good fortune00:04
entelechioshttp://jxplore.com/00:04
fenni see a login form and don't generally read the fine print00:04
entelechiosin terms of getting things sorted for papers00:04
ebowden_paperbot: http://www.karger.com/Article/FullText/8213100:04
entelechiosrussia has some other thing i used to use which was a lot simpler but00:04
entelechiosi see people use paperbot in here does it really still work00:04
paperbothttp://diyhpl.us/~bryan/papers2/paperbot/f3e126481b8d3ade19941bd04ac72437.txt00:04
fenni dunno00:04
entelechiosi remember it did a while ago00:04
fennfor some reason kanzure made it link to libgen and everything broke00:05
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jrayhawkworks for me00:06
fennhttp://libgen.org/scimag/get.php?doi=10.1126%2Fscitranslmed.3000139  give me a 40400:07
entelechiosfenn pretty sure years ago i had dr isenberg mail me this stuff anyways00:07
fennhttp://stm.sciencemag.org/content/1/3/3ra7.full wants me to register00:07
paperbothttp://libgen.org/scimag/get.php?doi=10.1126%2Fscitranslmed.300013900:07
entelechiosor at least drafts00:08
entelechiosthis was a long long time ago00:08
entelechiosbut usually just asking nicely to the researchers works great00:08
entelechiosespecially if youve got questions or ask for follow up commentary00:08
fennfuck that00:08
entelechioswhich also of course provides additonal info sometimes00:08
fennif it's publically funded research it should be online and easy to download00:08
entelechiosno doubt00:09
entelechiosanyways actually engaging with the researchers in question is rewarding00:09
fenni'm not an oncologist, i just don't want to read some poorly rehashed popular science article when i can read the real thing00:09
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entelechiosi'm just some goon00:10
entelechioswith no education and a lot of curiosity00:10
jrayhawkthat can get you pretty far00:11
entelechiosit has really00:11
entelechiosno debts00:11
fennwikipedia totally changes the game, we don't really need "education" anymore, just access to infrastructure00:11
entelechioswikipedia, i've done troll edits on it that have lasted to this day00:11
jrayhawkeh, i find wikipedia pretty bad for a lot of stuff00:11
fennit provides a basic overview on-demand that is hard to find anywhere else00:12
entelechioshttps://en.wikipedia.org/wiki/IKEA citation #6 SHHHHHHHHHHHHHHH don't blow it it's funny as hell00:12
entelechiosi probably just blew it00:12
fenni'm calling the wiki police00:12
entelechiosi've had that up there for at least a couple of years now00:12
jrayhawkyeah, there are occasionally some pretty big editors in here00:12
entelechiosamoung others i wont even mention00:12
entelechiosjust contradicting the lies00:13
entelechioswith citations00:13
entelechiosi'm sure they get noticed00:13
entelechiosbut then what if someone tried to edit out that whole paragraph to say 'no they're actually known for shitting the world up'00:13
entelechiosit'd get moderated out00:13
fennsomething in swedish00:13
fennit's not funny just because it's swedish00:14
gradstudentbotHood life: https://www.facebook.com/photo.php?fbid=29651902049501400:15
entelechiosi'd be impressed with IKEA if they had a reputation for extremely durable furniture on top of all of what they got going for themselves already00:15
fennentelechios: it's made of wood, they cut down forests, it's "eco friendly" is that it?00:15
ebowden_paperbot: http://www.omicsonline.org/functionalization-with-tat-peptide-enhances-blood-brain-barrier-crossing-in-vitro-of-nanoliposomes-carrying-a-curcumin-derivative-to-bind-amyloid-peptide-2157-7439.1000171.pdf&&aid=1227200:15
fennthe thing is, it probably is "eco friendly" compared to the alternatives00:16
entelechiosfenn: we don't have ikea here as far as i know, all my furniture is 2nd hand. that's your eco friendly alternative.00:16
jrayhawkI dunno, plastic's a lot easier to recycle.00:16
entelechiosyeah i wouldn't mind a new desk made out of bottle caps or something00:16
jrayhawkobviously depending on how leachy the plastic is.00:16
entelechiosnot far from where i am this woman in el salvador has her house made of plastic bottles00:16
entelechioshttp://photoblog.nbcnews.com/_news/2011/12/30/9815906-elderly-couple-make-a-dream-home-from-plastic-bottles?lite00:17
entelechiosits freakin cool00:17
entelechiosand really charming00:17
jrayhawkentelechios: http://piny.be/jrayhawk/notes/intellectual_maladaptation/ here is a thing i wrote for myself that i think you can use00:17
fennentelechios: this is pretty cool http://miniwiz.com/miniwiz/en/products/living/polli-brick  watch the video for how it's made from recycled bottles00:18
entelechiosjrayhawk: sounds like a lot of how the world goes round00:18
jrayhawkan elective system00:19
entelechiosjrayhawk: try nicaraguas current situation for eg, those folks just cant calm down00:19
paperbotRuntimeError: maximum recursion depth exceeded in cmp (file "/usr/lib/python2.7/_weakrefset.py", line 73, in __contains__)00:19
entelechiosthey got their former sandinistas trying to encroach upon costa rican territory doing the stupidest things ever00:19
entelechioslike trying to redivert a river00:19
entelechiosto redraw borders00:19
entelechioswow fenn thats pretty awesome too00:20
fennpersonally i think most furniture is pretty dumb. i'm a plastic bin and metro rack kind of guy, but i'd use a vertical storage carousel if i had my own place00:21
entelechiosi live in a pretty decent cucarachahut00:21
fenndo you have chagas disease00:21
entelechiosand make great money for my area00:21
entelechiosno i don't have chagas as far as i know00:21
entelechiosnever been tested00:22
entelechiosas far as i know it can be a pretty dormant thing00:22
fenn(does cucarachahut actually mean anything specific?)00:22
entelechiosit means my place is starting to get invaded by the damn things because the green season is coming along00:22
fenni like earthbag construction by Nader Khalili, especially if it's smooth and not covered in hippie art00:23
gradstudentbotI am completely satisfied with the size of my bench space.00:23
fenngradstudentbot: fuck you too00:23
gradstudentbotI haven't seen my PI in like a week.00:23
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fennhttp://calearth.org/images/building-designs/eco-dome/photos2/EcDmFinBack2.jpg00:24
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fennhere's one near joshua tree i stayed at http://fennetic.net/irc/IMG_8030.JPG00:26
entelechioswhat country are those in?00:26
fennsouthern california00:26
entelechioscool buildings00:26
entelechiosthey look like theyre from some science fiction something or other00:27
fennthis was https://www.facebook.com/pages/Bonita-Domes-Project/131821026865069?_fb_noscript=100:27
fennyes i think they used the same construction method for Star Wars Tatooine desert domes00:28
fennhttps://en.wikipedia.org/wiki/File:SW_binary_sunset.png00:28
fennit's based on ancient persian mud brick vaulted "anbar" cisterns00:29
fennanyway a little plastic goes a long way00:29
fennthe test sample they were using to do earthquake resistance testing destroyed the shaker table without even a single crack forming00:30
fennlike magnitude 9 earthquake00:30
entelechiosnice00:31
nmz787_iLemminkainen: http://pastebin.com/Hp28mUYM00:31
entelechiosid really like to live in something like that00:31
nmz787_iLemminkainen: FYI it was just a free registration to get that article00:32
fenni hear people make "wattle and daub" (mud and stick) houses, but they can't afford concrete to finish the exterior, so assassin bugs (barbeiros) live in the sticks in the walls and it gives people chagas disease00:33
fenni dont understand why they can't just put plastic on the mud to keep it from washing away?00:33
entelechiosyeah no doubt at all00:33
entelechioschagas is harsh00:33
entelechiosthe treatments for it fuck your brain up sometimes00:33
nmz787_iLemminkainen: just found this too http://journal.frontiersin.org/Journal/10.3389/fgene.2011.00090/full00:34
entelechiosive seen the bugs before00:34
gradstudentbotSomeone's sitting at my bench space.00:34
nmz787_iLemminkainen: this was the actual paper http://genome.cshlp.org/content/early/2014/04/02/gr.162131.113.abstract00:35
fennalso earthbag is bullet resistant00:35
nmz787_i.title00:35
yoleauxSomatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis00:35
fennnot every mutation would lead to abnormal growth, and not all abnormal growth leads to metastasis00:37
fennstem cell exhaustion eh00:38
fenni thought the telomere hypothesis was disproven00:39
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fennjrayhawk: wrt http://piny.be/jrayhawk/notes/intellectual_maladaptation/ why is there no attempt made at modeling the values and justifications of others?01:02
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fennwhy am i reading this01:02
fennnow that we have robots that can fly airplanes, we can have nuclear airplanes right?01:05
gradstudentbotI think our octopus might be smarter than me.01:06
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fennoops i meant isotropic, not anisotropic01:28
fennaw motherfucker. ikiwiki won't accept my submission because "your login session has expired" and then it deletes everything i wrote01:30
mosasaurGet your head out of the cloud fenn ;-)01:31
fennget the clouds out of my head01:31
fenni'm just garbage collecting at this point01:32
mosasaurbtw have you taught yoleaux some new tricks already?01:32
fennno, and i don't care01:32
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gradstudentbotMy labview crashed.01:35
gnushahttps://secure.diyhpl.us/cgit/diyhpluswiki/commit/?id=0fb71545 fenn: radiation damage resistance. plz re-read papers and fix this summary01:38
fenndear lazyweb,01:40
fennwhere do i begin01:40
jrayhawk"session"? on diyhpl.us?01:40
jrayhawkthat's a bit broken01:40
fenni really don't get how ikiwiki works01:40
jrayhawki should turn that into a bug report01:41
fenna web browser asking for my shell credentials just seems wrong01:41
fenni guess it's better than SSl01:42
jrayhawkI can disable password authentication at the sshd level for 'fenn' if you want.01:42
fennum, but then how would i edit the page01:42
jrayhawkusing either an ssh key or a web browser01:42
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fennhow do i put an ssh key into a web browser01:43
jrayhawkyou put an ssh key into an ssh client01:43
jrayhawkgit+ssh://diyhpl.us/srv/git/diyhpluswiki01:44
fennoh, i can edit locally and push, but editing with a web browser wouldn't work if password was disabled01:44
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jrayhawkre: modeling values and motivations of others: if they don't have perfect values and motivations, they don't exist. if they do have perfect values and motivations, then there's no disagreement.01:45
jrayhawk"at the sshd level"01:45
fenneither way "they don't exist"01:45
fennpart of accepting reality is accepting the reality of the thoughts of others01:45
jrayhawkone would hope01:46
fennthat whole page is extremely aspergers01:46
jrayhawkuh, i think you may have your psychological pathologies quite confused01:46
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fennperhaps01:47
fennaspergers doesn't exist :P01:47
jrayhawkdoesn't exist independently from autism?01:47
fenni don't know man, it's just words01:48
jrayhawkwhat do words, like, really mean, man?01:48
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fenni guess we could grade foods by their level of anisotropy01:49
fennaspect ratio and grain size01:49
fennit's logistically simpler to deal with foods with smaller grain sizes and aspect ratios01:50
jrayhawkoh, isotropic. yeah, pate and pemmican are probably decent options.01:50
fennor really objects in general01:50
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fenntoday passover candles were on sale so i bought 8 boxes01:51
fenneventually i will melt them down and dissolve LDPE to make machinable wax for silicone rubber molds for electronics cases etc etc01:51
fennbut until then i have these round long things that need to be corralled in boxes or they will spill everywhere01:52
fennbut at least they're uniform in size. so maybe there's a parameter to reflect that too, like fractal dimension01:53
fennor just standard deviation01:53
fennvariance01:53
fenndoesn't quite capture what i meant. peeps marshmallows are harder to stack than cylindrical marshmallows01:54
fenni have something called "tangle factor" that isn't fully defined yet01:55
fenna cord that's bundled up neatly is easier to deal with than one that's just thrown in a box with other cords01:56
fennchemically, coconut oil and paraffin wax aren't that different. i'm offended by this01:57
fennthe fact that i can't eat paraffin wax01:58
fennand derive sustenance from it01:58
mosasaurbee wax candles are multipurpose01:59
fennwhat do you mean01:59
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mosasauryou can eat them02:00
mosasaurI think02:00
mosasaurprobably put it in your ears too02:01
fenngreat02:02
mosasaurWhy not ask jrayhawk for an ssh  shell? You could do sshfs over that or remote x or just nano in the terminal.02:04
fenni am in a ssh shell right now02:05
fennsince it was a wiki i clicked the 'edit' button, perhaps a wrong move02:06
mosasaurNo the error was earlier in the chain, by choosing to use a webbrowser as an interface.02:09
fennsorry i am still conceptualizing my data integration entity backend02:11
fenni blame julian assange for getting distracted by politics02:11
fenninstead of maintaining surfraw02:11
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fennmosasaur: http://fennetic.net/irc/ontological_assimilator02:12
jrayhawki concur, using a browser is always a wrong move02:14
mosasaurfenn: I saw that earlier, for now and for me, it would be sufficient if it could just extract javascript generated content.02:15
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fennso, if i need shell credentials to edit a wiki page, why is there an edit button?02:19
fenni still don't understand why i need to log in to edit a wiki page02:22
fenni mean, the point of wikis is (theoretically) anyone can edit them02:23
fennotherwise it's just a content management system02:23
fennmosasaur: have you looked at phantomjs?02:25
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mosasaurfenn: No, but I was looking for something that would just work like wget or curl.02:29
fennyes i agree, wget really needs some basic javascript support02:30
fenn"t's intended that whatever JavaScript functionality may be provided for Wget, will be available separately, in the form of a plugin module"02:33
mosasaurHow about using something like youtube-dl as a starting point / inspiration?02:34
fenni have no idea how that works02:34
mosasaurAll I know is it's a python script and it works.02:35
fennokay, but it's designed for a specific DOM element on a specific site, and is regularly updated to make sure it still works02:35
mosasaurStart with the big sites, then by and by assimilate the smaller ones.02:36
fennsurfraw tried that and failed02:36
fennalso, it's a lot of work02:37
fennan infinite amount of work02:37
fennprobably worth reading if you really care: http://wget.addictivecode.org/FeatureSpecifications/JavaScript02:38
mosasaurYou know a way to leverage some other work? Like taking a screenshot and then use a general character recognition engine?02:39
fenner.. that's not really the problem02:39
mosasaurThanks for that wget link02:39
fennthe problem is related to the turing machine halting problem; we can't know in advance what the javascript will do in all cases02:40
fennif there's no user input, you can just run the program and give it some number of seconds to complete all the branches02:40
fennbut if you have to give it data, especially if that involves downloading from third party services, you have no idea whether you're stuck in an infinite loop or not02:41
mosasaurIf you have a lot of people sending in screenshots it would be some kind of big data analysis problem, the advantage would be one would only need a single really smart data interpreter.02:42
fennthere's probably some "three kings of siam" classic computer science/cryptographic trust generalized version of this problem that i don't know about02:42
fennmosasaur: the main use case for wget is to mirror a web site. how do you know when you're done crawling the entire site?02:45
mosasaurThere's always things one doesn't know about, the smart thing is to try to interpret the things one does know about or that one can get their hands on.02:45
mosasaurYou've abandoned the screenshot suggestion it seems. May I ask why?02:46
fenni don't really get it02:46
fennwhy not just take a screenshot yourself?02:47
fennwhere does wget come into it?02:47
mosasaurThe screenshot idea leverages the user to generate the page content.02:47
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fennbut the whole point of wget is that it's automatic02:47
mosasaurI see, you where on the wget path and I was trying to build an assimilator.02:48
mosasaurIndeed for a wget it seems absurd.02:48
gradstudentbotYeah, it's significant.02:48
fennokay, for teaching an assimilator what's what, i'd use the chrome inspector to select part of the DOM from the page you're viewing, and a plugin copies that element, its class and url and id etc, and surrounding elements, and puts it into a feature table to feed some machine learning algorithm (probably a bayesian classifier)02:50
fenns/plugin/chrome extension/02:51
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mosasaurOK, I was just trying to reduce the amount of work involved in anticipating each page's user interface.02:52
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fennthe point of the assimilator isn't necessarily to run wild on the net like a search engine spider, but rather to present the subset of data you're interested in with a uniform format02:52
fennso it's a cooperative effort between man and machine02:53
fennbring the "user agent" back to "user agent"02:53
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mosasaurAh, but shouldn't an assimilator just assimilate?02:53
fennit seems right now we either have "agents" or "marks" (in the used car salesman sense of the word)02:54
mosasaurMaybe call it an augmented user interface?02:54
fennmosasaur: you have to shove data in front of it to assimilate from02:54
fennit's not a user interface02:55
fennit's a user agent :(02:55
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fennthe frustrating part about all this is we got it theoretically right from the start02:55
fennbut worse is better02:56
mosasaurLike we have virtual reality and augmented reality, we could have augmented user agents.02:56
fennwhatever02:56
fenngo learn what those words mean02:56
mosasaurI should RTFM?02:57
fenna user agent is a piece of software that acts on the user's behalf02:57
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mosasaurThe way I see it, currently the user is at the mercy of whatever javascript a page uses to capture their eyeballs.02:58
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mosasaurAnd, current browsers (~user agents) do not act on the user's behalf, far from it.02:59
mosasaurThey condition them even, like make them want to click on edit buttons ;-)03:00
fennwell tim berners-lee never got around to adding an edit protocol03:01
jrayhawkfenn: the account signup is because i am too lazy to integrate with a captcha service03:01
mosasaurSo we need to augment the user's defenses or something like that.03:01
mosasaurIt doesn't do to stick to definitions if reality doesn't conform to them any more.03:02
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fenni'm not going to make up words just because some wankers that have hundreds of billions of dollars are abusing those words03:03
jrayhawkhttp edit: https://tools.ietf.org/html/rfc251803:03
mosasaurhah, backpeddling now, jrayhawk?03:03
jrayhawkhmm?03:03
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fennugh, WebDAV, i always wondered what that was for03:04
jrayhawkthough, unfortunately, no mention of "range" is present in that RFC03:05
mosasaurIt's kind of strange to mention captcha when talking about bypassing the browser interface.03:05
fennrange?03:05
jrayhawkhttp://en.wikipedia.org/wiki/List_of_HTTP_header_fields#range-request-header03:05
gradstudentbotI lost my pipette.03:06
jrayhawkmosasaur: just because it is the wrong move doesn't mean users still don't insist upon it03:06
mosasaurAh OK then. I know what, or who you mean.03:07
fennthe way i see it we just need smarter spam filters03:08
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jrayhawki am told by other ikiwiki users that there exist no git protocol spambots, yet03:08
fennif the spam bots are smart enough to contribute apparently meaningful signal to the document, who am I to judge?03:08
jrayhawkso we could just open up git:// to writes03:08
fennthat seems reasonable03:09
archelskanzure: I'm sitting in the same room as the person who maintains CoCoMac03:09
archels(in case you have any constructive criticism that needs, uh, enforcing)03:10
fennit needs more zen! *thwack*03:10
jrayhawkpunchline from the last time i brought this up: 17:27 < kanzure> you might consider my commits to be git spam03:10
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fennit's helpful to have feedback on why something was considered spam03:12
fennlooking at the rules bayesian filters use is very illuminating about the narrowness of human experience03:13
jrayhawkkanzure: why haven't you written a git object creation bot to test open git:// ports03:13
ebowdenOh Lemminkainen, about BBB crossing: http://boa.unimib.it/bitstream/10281/45152/1/Sancini%20et%20al.%20JNMNT_20132157-7439-4-171(6).pdf03:14
jrayhawkthe functional medicine crowd is super excited about BBB permeability03:15
jrayhawkthe next frontier in etiology03:15
fennlike, stopping it?03:15
mosasaurif only they could get some dopamine in03:15
fenncause L-DOPA isn't good enough, apparently03:16
mosasaurit has to be suppressed in the rest of the body03:16
fennwhich we know how to do03:17
fennpeople take mucuna all the time; i haven't heard of anyone dying03:17
fennkinda strange that you can get the active ingredient but not the thing that prevents side effects03:18
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fenn"Co-administration of pyridoxine without a DDCI accelerates the peripheral decarboxylation of L-DOPA to such an extent that it negates the effects of L-DOPA administration, a phenomenon that historically caused great confusion."03:29
fennDDCI = DOPA decarboxylase inhibitor03:30
fennthis is probably the real reason L-DOPA is coadministered with carbidopa03:31
fenncombined therapy potentiates the central effects of l-dopa by decreasing the dose-dependency 4-5 fold, therein allowing for effective Parkinson's Disease treatment without cardiovascular risk associated with high peripheral dopamine03:32
mosasaurI just adminsiter fava beans. It seems periferal suppression enables one to up the dose that reaches the brain to such high levels that it burns out the substantia nigra (IIRC).03:33
fennwow i didn't know fava beans contained L-DOPA03:35
fenn"One way to use dry beans of the minor type is to sprout them. Sprouting increases the levodopa content of the bean by a factor of five. My rule of thumb is that each sprouted fava bean contains two mg levodopa."03:36
mosasaurI'm talking about only myself ofc, and I don't have Parkinsons as far as I can tell. I don't treat patients nor would I deny them effective treatment.03:36
fennLevodopa reacts with potassium iodate, at pH 5, to form a reddish-orange compound. The intensity of the colour can be used to measure the amount of levodopa.03:38
fennof course iodine also reacts with plenty of other stuff03:39
fennthis reminds me of soaking food along with rye berries to try to destroy the phytic acid03:42
fennsince phytic acid binds iron, you can titrate with ferric chloride and see how much the solution tint changes03:45
fenntheoretically at least03:45
fennhopefully whatever process you're testing wouldn't change the phenol content of the food: https://en.wikipedia.org/wiki/Ferric_chloride_test03:48
mosasaurIf you'd just stick down to earth you'd probably make a good programmer.03:52
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fenncopper also binds to phytic acid so that could serve as a second check03:53
fennanyway, i decided it was easier to take a mineral supplement03:54
fenninstead of worrying about invisible stuff and soaking grains and all that03:54
fennthe point of the colorimetric test was so i'd know whether these folk traditions actually had the intended effect or not (there's a lot of weird "culture" out there)03:56
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fennmosasaur: how to get more down to earth than knowing the mineral content of your food?03:57
fenncertainly i'd prefer a GC/MS built into every cell phone, but for some reason the consumer electronics gods haven't seen fit to bless us with such a tool03:59
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mosasaurFood is important yes, but the minerals are not absorbed free of context.03:59
fennplease elaborate03:59
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mosasaurhttps://news.ycombinator.com/item?id=761058304:00
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fenn.title04:00
yoleauxProcessed foods that dilute protein content subvert our appetite control systems04:00
fennthis is talking about protein content. anyway, go ahead, try to get your RDA of magnesium by chewing on kale04:01
fennit's not gonna happen04:01
mosasaurYou're right but it's about the general principle that how the stuff is packaged matters.04:02
mosasaurYou're too much down to earth now, I know it's complicated.04:03
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fenni bought a ham for $1.60 per pound, it seems like anyone ought to be able to afford that04:05
fennit was a real pig leg too, not glued together slime04:06
fenni think the problem is the average person just doesn't know what's going on04:07
fennthey believe the "heart healthy" labels and think cheerios are health food04:07
fennthey think "i ate something green today, that's vegetables, the rest will take care of itself"04:08
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fenni wonder what would have happened if joseph stalin never took over the soviet union04:10
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fennmosasaur: probably the only good comment on that thread https://news.ycombinator.com/item?id=761077204:13
mosasaurjust admit, they had you at "Screw it"04:14
fennno actually i started at f) and worked backward04:15
mosasaurAh OK ;-)04:15
mosasaurI don't like f) because paleo-lacto-ovo-pescetarianism is obviously the best way to go.04:19
mosasaurBut that's just because it's getting harder and harder to acquire proteins as a vegetarian.04:20
fenni'm undecided on milk; see our above conversation about lectins and autoimmunity04:20
mosasaurYeah not milk, but yoghurt is somewhat OK.04:21
fenni like kefir04:21
fennhard to find good yogurt04:21
fenni dont know if you're being sarcastic or not04:22
mosasaurI don't know if you care04:23
gradstudentbotThe autoclave smells really good.04:23
fenni don't04:23
mosasaurJust what I thought04:23
fennglad that's settled04:23
fennif you just ate huge quantities of salmon you're probably fine04:24
mosasaurI did04:24
mosasaurI do have stacks of creatine in case my conscience kicks in though.04:25
fennthey started selling foil lined pouches of tuna and salmon a couple years ago, very logistically convenient04:25
fennbut twice the price of canned04:25
fennoh well04:25
mosasaurOver here canned is the more expensive item.04:27
mosasaurDid you compare weight or just price per item?04:28
fennprice per drained weight04:28
fennthe pouches are pre-drained04:28
mosasaurI ate a lot of steamed mackerel too the last few weeks but now I can't stand the thing anymore.04:29
fenndid you mean carnitine?04:30
mosasaurNo, creatine. I do have carnitine too, but I never noticed it having any effect.04:31
ebowdenCreatine dodecyl ester is showing promise as a source of creatine that penetrates the blood-brain-barrier.04:32
mosasaurCreatine seems to help me recover earlier from exercise, especially in combination with vitamin B, but that has to be combined with lecithin to counteract the headache the next morning, possibly from the niacin in the vitamin B concentrate.04:33
fennare you taking piracetam? (or some other racetam)04:34
fennlecithin is a source of choline that prevents piracetam headaches (i don't really understand why you get headaches)04:35
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mosasaurI'm now off all supplements except a vitamin pill each day. When I start seriously exercising again, or drop the fish eating, I guess I'll have to compensate with supplements somehow. I don't take any drugs, not even even coffee or alcohol. OK maybe chocolate milk.04:37
ebowdenOh, apparently, noopept works by a similar mechanism, and is a lot more potent than piracetam.04:37
mosasaurOh maybe the fava beans could be a nootropic.04:37
fennlevodopa is definitely a nootropic04:38
mosasaurYes, I think it's the choline that counteracts the niacine, but I don't know except that it works.04:38
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gradstudentbotIt's contaminated.04:39
mosasaurBut the creatine enhances the niacin headache somehow?04:40
mosasaurEggs help against that headache too.04:45
mosasaurBut anyway without all that artificial stuff pumping up one's body and getting systems out of balance, things are much better. Like eating lots of fruit and unprocessed food.04:47
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fenncreatine might be aggravating high blood pressure; you might just have a "hangover". try drinking pedialyte after exercising next time04:51
fennunprocessed food tends to be higher in potassium04:51
fennavocados are also good04:52
mosasaurI've got potassium pills too04:52
fennit's just potassium chloride in a capsule?04:52
mosasaurYeah potassium chloride. I actually prefer the citrate but they only sell that over the border and I am out of supply now.04:54
mosasaurNo it's not high blood pressure I think. Because some salmiak containing sweets or rooibos tea gives me really high blood pressure (like swollen feet and hands and stuff in case of the sweets) but they never cause headaches.05:00
fennpotassium chloride pills were banned because they can be fatal. however you'd have to be insane to take 47 pills at once http://jama.jamanetwork.com/article.aspx?articleid=36121405:00
mosasaurAnd it's not tension headache but something at the back of my head just above the neck. Especially inconvenient while trying to masturbate because the effect peaks synchronously.05:01
fenni had some reference about creatine boosting steroid hormone conversion (aldosterone and testosterone are both steroids) and maybe this reaction needs niacin to proceed (i lost the reference though)05:04
mosasaurDifferent things are banned in different countries, for example in Germany over the border I can buy potassium citrate but now over here in the Netherlands. And here i can buy melatonin that seems to be proscribed in some other countries.05:05
mosasaurnow ==> not05:05
gradstudentbotI don't remember the paper, but someone definitely did that.05:06
mosasaurRight something something testosterone but it's nearly impossible to figure out how all these things connect so better not go there and just eat healthy food, not a lot.05:07
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fennlol. it's figuring out what's "healthy" that's the problem05:11
mosasaurThat's where the paleo philosophy kicks in. Although I had a hard time accepting that early humans might have been meat eaters.05:13
fennwatching "survivorman" or "naked and afraid" it starts to make sense05:13
mosasaurI think maybe we're just glorified fruit picking machines that also consume fish.05:13
mosasaurThe aquatic human theory, or at least one that traveled parallel a shore.05:14
fennamphibious05:15
fennwe have snorkels on our face (a nose)05:15
mosasaurAnd we're nearly hairless05:15
fenndolphins don't have snorkels05:15
mosasaurif it's a snorkel it's upside down05:15
fennuh, it's a thing that keeps water from rushing straight down into your lungs05:16
fenni dont know if there's even a word for that05:17
mosasaura valve05:17
fennit's not a valve, it's passive05:17
mosasaura sifon05:18
mosasaurWhat's most telling is babies seem to have an underwater reflex.05:19
fenndiving hood maybe05:19
fenndiving bell05:20
mosasaurOfc people trying if kittens have the same reflex would be instantly lynched05:21
fennevery toilet in the world works on this principle, how is there not a name for it?05:21
fenni guess it's a siphon05:23
mosasauran inverted siphon05:23
mosasaurhttp://en.wikipedia.org/wiki/Siphon05:23
mosasaurAnyway, we were talking about healthy food, why not just minerals etc.05:26
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fennit seems like the hardest ones to get are magnesium, chromium, selenium, iodine05:27
JayDuggerMicronutrients?05:27
fennmaybe zinc05:28
fennjeez chromium isn't even in the database?05:28
mosasaurThere you go again, one can't just eat zinc, it must be delivered in the right way, accompanied by the right kind of other stuff.05:30
mosasaurIn one form it may be toxic, in another it might help vitamin A to improve eyesight.05:31
fennof course of course, but zinc methionate is pretty standard05:31
fennalbion did a lot of research in the 1980's with optimizing mineral delivery by amino acid chelates in animal feed; turns out humans are animals and it works for us too05:32
fennmagnesium glycinate costs more than magnesium citrate; i don't know if it's worth it, but magnesium citrate is good enough for me05:33
fenni haven't messed with iodine yet but there's a whole book on it: http://lewisford.info/iodide.html05:34
mosasaurthe citrate comes in big white pills that dissolve in water while making bubbles05:34
fennno it comes in tiny glass soda bottles and they're carbonated05:35
fenncitric acid + magnesium carbonate will give you magnesium citrate, but it will be ionic, not a chelate05:35
mosasaurI'm not sure if you're sarcastic05:35
fennmagnesium citrate oral solution USP: http://www.walgreens.com/store/c/walgreens-magnesium-citrate-saline-laxative-oral-solution-grape/ID=prod5604183-product05:37
FourFire"potassium chloride pills were banned because they can be fatal. however you'd have to be insane to take 47 pills at once" a certain percentage of the population is provably insane05:37
fennthese are not mutually contradictory statements05:37
FourFire" And it's not tension headache but something at the back of my head just above the neck. Especially inconvenient while trying to masturbate because the effect peaks synchronously." that's unfortunate05:38
FourFirefenn, how is a nose a snorkel ??05:39
mosasaurhttp://www.proz.com/kudoz/german_to_english/medical%3A_pharmaceuticals/223624-kalinor_brause.html05:39
FourFireoh ok05:39
fennit keeps the air in and the water out05:39
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mosasaureffervescent tablets05:40
fennyeah i have some Nuun hydration tablets05:40
mosasauralso, potassium not magnesium05:40
fennbelieve it or not, they are different elements05:41
mosasaurHi fourfire, I hope you're not lagging?05:43
fenn500ml of nuun electrolyte replacement formula contains: Na 360, K 100, Ca 12, Mg 25, vitamin C 37.5, vitmain B2 0.5, and a bunch of citrate05:44
mosasaurI thought we were supposed to believe those things are just marketing fluff?05:45
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fenn25 mg of magnesium is only 6% of your RDA05:46
fennit's better than gatorade though05:46
fenntoo much sodium IMHO05:46
fenneverything you need to know about minerals and diet: http://krispin.com/potassm.html http://krispin.com/magnes.html http://krispin.com/thyroid.html05:53
mosasaurhttp://www.epgonline.org/drugs/de/kalinor%C2%AEbrausetabletten/ better link, the other still claims it's the chlorate, which is not the case05:53
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mosasaurRight, speed up the metabolism via the thyroid. The only problem is it's a very delicate balance and probably ends up being very bad for your health.05:56
fennit only speeds up if you had a mineral deficiency that was causing hypothyroidism05:57
fenni mean, don't just go take some random gland extract for fun05:57
mosasauror if you're forced to write a patient clustering AI by a mad professor05:58
fennI plead the fifth05:58
fenntime for bed06:02
cluckjO_o06:03
mosasaurnight fenn ;-)06:03
fenngood time of day, citizens of the world!06:05
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ebowdenNight.06:08
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JayDuggerMorning.06:29
cluckjsup06:34
eudoxiaJayDugger: judging by your github history i'm guessing you know this: is there some Anki plugin that lets me store the cards as simple text files in a tree of directories?06:36
eudoxiaso i can eg put them in a github repo, generate them from a script, etc.06:36
JayDuggereudoxia, I don't think any such thing exists.06:38
JayDuggerIf you've already checked the on-line list of add-ons, then I can suggest a few things.06:38
JayDuggerYou might just get what you want from correctly formatted CSV files.06:39
eudoxiaJayDugger: would i have to manually import them every time i started anki?06:40
JayDuggerYou might have a directory tree of plain text files, and you might have a script which mapped their absolute filenames and their content to...06:41
JayDuggerYeah, you would.06:41
JayDuggerPerhaps (i.e., I have no idea if) you could do so by directly interacting with Anki's SQLite databases.06:41
JayDuggerThat's probably a question for the developers.06:42
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JayDuggerYou wouldn't quite need to import the whole tree every time, but you'd need to do that every time the tree's contents changed.06:43
JayDuggerImport would turn files into notes, and Anki would track scheduling once the notes existed.06:43
JayDuggerAnki has got plain text export for cards and notes though, and on a per-deck basis.06:44
eudoxiahm, thanks for the info06:46
JayDuggerNot much of an answer, I'm afraid, but you're welcome.06:46
eudoxiai suppose the simplest path would be a program that generated an XML import from a tree of text files06:46
eudoxiai'm gonna see what i come up with06:47
JayDuggerGood luck!06:47
eudoxiathanks C:06:48
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FourFire"<mosasaur> Hi fourfire, I hope you're not lagging?" only by a couple of hours07:07
FourFireTemporal distortion is... hard07:07
eudoxialiving beyond half a light hour would suck07:09
eudoxia"yes hello mr. nasa man please make the following google searches"07:09
FourFireeudoxia, lol, what's going to happen when mars is eventually colonized07:14
FourFirewill they just be mostly disconnected with their local cache?07:14
FourFireI know that Craig Venter has worked on some InterPlanetary Internet protocol07:15
eudoxiathey'll probably use asynchronous proxies for synchronous behaviour07:15
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ParahSailinhm, parallela shipped out to me07:54
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FourFireParahSailin, cool, do you have the 16 or 64 version?09:01
ParahSailin1609:02
FourFirewhat're you using it for?09:02
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ParahSailincurrently dont have one09:04
FourFireI mean, what are you going to be using it for, something specific, or just something to hack on?09:07
chris_99whatcha talking about?09:11
ParahSailinyeah, mostly derping around09:12
ParahSailinthe adapteva parallela09:12
chris_99aha cool09:12
chris_99i wanted to get one of thoses09:13
chris_99i'm curious you know their own processor part uses OpenCL09:13
chris_99how does that part stack up to a GPU i wondr09:13
chris_99(i realise theres an FPGA and ARM part too)09:13
FourFireyeah I'm interested in it's capabilities vs a GPU09:35
FourFireif it truly is as power efficient as they claim09:36
FourFirebut I want the 64 version, and the pluralcore roadmap versions09:36
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chris_99if it's just like 16 gpu cores, it's not that impressive is it?09:42
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kanzure03:09 < archels> kanzure: I'm sitting in the same room as the person who maintains CoCoMac09:51
kanzure03:10 < archels> (in case you have any constructive criticism that needs, uh, enforcing)09:51
kanzuregod bless this channel09:51
kanzure03:13 < jrayhawk> kanzure: why haven't you written a git object creation bot to test open git:// ports09:52
kanzurewhy would i give when i could just take?09:52
kanzureeudoxia: don't waste your time on anki09:58
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kanzurehttp://www.ludumdare.com/compo/10:05
kanzureoh yeah, they do livestreaming these days. that's neat.10:06
kanzurei can't remember which ludum dare i participated in. must have been 2003ish?10:06
chris_99what did you make?10:07
kanzureno idea10:08
ParahSailini am slightly confused though, FourFire, have they actually fabbed 64 core asics or is it just 4 ics on a board10:19
kanzurehttp://www.the-odin.com/ "I have been working hard lately to build a store that provides consumables and materials and equipment to small labs and DIYBio people and it is almost ready to open"10:19
kanzurejosiah zayner <josiah.p.zayner@nasa.gov>10:19
FourFireParahSailin, they actually fabbed 64 core chips10:21
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ParahSailindang thats too bad they didnt let the kickstarter people upgrade10:22
FourFirebut they said they were only going to produce them if they reached their stretch goal (kickstarter), and they didn't10:22
FourFireso they have one batch of 64 core "engineering samples"10:22
FourFireand that batch which was preordered gets delivered to the original backers, but otherwise they aren't selling anything besides the 16 core one10:23
FourFirewhich sort of sucks from my perspective, as I was interested in using lots of the manycore boards for a project10:23
chris_99what was the project?10:24
FourFirethey are weaker than GPUs of course, but if openGL can run on them, they should certainly beat performance per watt*dollar for my application at least10:25
FourFirechris_99, Massively parallel Molecular Dynamics10:25
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chris_99sounds cool, that means modelling chemical reactions?10:25
FourFireI want to use an evolutionary algorithm to design molecules10:26
chris_99oh10:26
chris_99what kind of molecules?10:26
kanzuremolecular dynamics is often "does this molecule hold together"10:26
FourFirebased on how they perform in certain reactions with specified environmental values10:26
chris_99ah10:26
FourFirebut basically yes10:26
FourFiredoing chemistry on a computer10:27
gradstudentbotYeah, there's a clear trend.10:28
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kanzure"Brazil has an nation wide agreement providing journal access to 423 research institutions. It is called Portal de Periódicos, provided by CAPES. According to its 2013 financial report [1], last year CAPES spent US$ 93,872,151.11  (with US$ 31,644,204.12 paid to Elsevier). "10:33
kanzure"Some institutions that are not covered by the agreement, as they do not meet the eligibility criteria, had to pay in separate in order to get access to this portal, spending an additional of US$ 11,560,438.93. "10:33
kanzurehttp://www.capes.gov.br/images/stories/download/Contas_Publicas/Relatorio-de-Gestao-2013.pdf10:33
entelechiosjesus christ10:34
entelechiosthats actually the kind of money per nation that can afford it paid to these assholes?10:35
entelechiosi'm just a little dumbstruck here10:37
kanzureit's an arms dealer, what would you expect10:38
kanzure"buy our science or we will blow you the fuck up"10:38
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nmz787_iis there a good function in python handles malformed paths (i.e. \ \\ or /)?11:17
nmz787_i this is for windows, so I don't think spaces in dirs need escaped, I don't think that a user would do that either, but they might use forward slashes11:18
ParahSailini bet in windows the os.path functions handle forward and backslashes correctly11:20
ParahSailinyeah, path.normpath("C:\derp/derp") -> 'C:\\derp\\derp'11:23
kanzureimport ntpath11:25
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kanzurehttp://www.theonion.com/articles/project-manager-leaves-suicide-powerpoint-presenta,1290/11:54
kanzure"Ron clearly spent a lot of time on that presentation. If the subject matter weren't so heavy, we'd probably use it to train his replacement."11:54
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entelechios"We all got Ron's message loud and clear when that JPEG of his wife wipe-transitioned to a photo of her tombstone," coworker Anne Thibideux said.12:01
entelechioshahaha12:01
delinquentmekanzure, I sent you a love letter on HN12:02
kanzuregive me a link if you want me to see it12:03
delinquentmeadvice if I'm to talk to someone from a publishing company?12:10
kanzurehave something to say12:10
delinquentmeShould I have a lawyer before I reach out to them?  because "fair use" type stuff?12:10
kanzuredon't waste doug's time12:10
delinquentmeha12:11
delinquentmewhat makes you say that kanzure12:11
kanzureit's always a good idea to not waste people's time12:11
kanzureotherwise they get grumpy like me12:11
delinquentmewell I think you're just trying to be a dick without motivation and no substance because you can and its the internet12:11
delinquentmeso if theres substance to the claim I'll listen to it12:11
delinquentmebut I think you're just being a dick12:11
kanzurehere's an alternative theory, i said "have something to say" because i really think it's good advice12:12
delinquentmeI'm taken aback that you think I wouldn't12:12
kanzurewell, you're telling me i'm being a dick, which indicates you don't12:13
delinquentmeAlso its not pivotal to go in saying ' I have suggestions '  ... but simply BEING someone whos done this shit ... makes it valuable to him12:13
delinquentmeyou're being a dick because of the presupposed time wasting.12:13
delinquentmebecause you're well a dick like that,  which I wish you wouldn't be12:14
delinquentmehowever for some reason you feel predisposed to be12:14
delinquentme*shrug* maybe you just didn't think about it before you said it.12:15
delinquentmeseriously kanzure what can I do to help with this issue you're taking.  Do you want me to list you as a co-conspirator on this project?12:32
delinquentmeI want to get along with you man.  I think this kind of shit is stupid and damaging to the overall good12:33
kanzureif you truly believe that then you need to stop thinking that i'm out to get you12:34
delinquentmekanzure, i think theres some underlying motivation which caused you to say " dont waste someones time "12:35
delinquentmeTrue?12:35
delinquentmeBecause either its wildly unconsidered ... which I dont think you're THAT a-emotional or you're pissed about it12:36
kanzurepissed about what?12:36
delinquentmeYou're avoiding the question12:36
kanzureuh12:37
delinquentmewhat was the underlying motivation12:37
kanzurei wanted to give you advice12:38
delinquentmeif you want listed or more credit on the OpSci project say it12:38
kanzurehaven't heard that name in a while12:38
delinquentmeYou gave me the journal list on it.  I executed on it12:38
kanzurei don't think that telling doug about opsci is going to do anything interesting12:39
delinquentmeI dont either. But I think the conversation would be.12:39
kanzureuh?12:39
kanzurewhy12:40
* delinquentme facepalm12:40
kanzurezotero is much more widely known and has more coverage, and i'm pretty certain he's aware of software such as zotero12:40
kanzure(coverage as in publisher coverage of course)12:40
kanzuretelling him about scraper automation just doesn't seem to be useful12:41
kanzurehe doesn't need scrapers, he has his own data, right?12:41
gradstudentbotNo, you can't borrow my pipette.12:41
delinquentmepoint taken12:42
kanzureif anything, what he needs is a way to change his business into something that will survive the collapse of the academic publishing industry12:43
kanzureeven as the academic publishing industry collapses, giant megacorps like elsevier will take a loooong time to completely die12:44
kanzureincluding his own12:44
kanzurethere's a bunch of competing trends that probably seem bad from the perspective of publishers12:45
kanzureopen access copyright licenses, grant funding agencies insisting on certain legal terms, collapse of NIH/NSF funding12:46
kanzurep2p file sharing12:46
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kanzurebustable DRM and watermarks12:46
kanzure"altmetrics"12:46
kanzurepreprint servers12:46
kanzureand then second-order effects, stuff like mendeley (which got acquired of course), google scholar, MOOCs and a possible downtrend in traditional university structure (which might stop the faucet of cheap science labor eventually)12:47
kanzureoh yeah, and then the insane working conditions of researchers, "postdocs" are considered junior, the low pay of basically all science-related industries12:48
kanzuredwindling library budgets to pay subscription fees12:48
kanzureand then there's all the weird dynamics at play inside of the publishers: researchers are *paying* them to publish their papers, often per page or per figure, which is a really broken dynamic that leaves them vulnerable in a lot of places12:49
kanzure12:59 < betkowski> How many people submitted games last LD?12:59
kanzure12:59 < OmegaVesko> betkowski: 2400 or so, I think12:59
entelechiosnice rant13:16
kanzurehe's the one calling me a dick but he *leaves* halfway through a wonderful rant, pfft13:17
entelechiosi think i know the difference between you being a dick and you having something interesting to say13:18
entelechiosyou've bluntly told me to 'fuck off' before13:18
kanzureyes, but what were you saying at the time?13:19
entelechiosi think i was asking archels if he had any thoughts on hamerhoff and penrose's theories13:19
kanzureoh yeah, that's definitely a valid reason to tell you to get out and/or lost13:20
entelechiosthat won't convince me though13:20
entelechiosyou oughta work on your rhetoric a little maybe13:20
entelechiosseems to be rubbing people the wrong way here13:20
entelechiosi mean ultimately your goal should be persuading people to think the way you think if you really think you're right13:21
kanzurehaha no there's a history with delinquentme where he thinks i'm an asshole, don't read too much into it13:21
kanzurewhy should i bother persuading you to not talk about penrose?13:21
entelechiosno, because i think you can be an asshole too sometimes. and i think you oughta persuade me that their theories are shit if you really think that way rather than 'fuck off'13:21
kanzurei don't mind people talking about those thoeries somewhere, just not here13:21
kanzurei'm not really upset that there's people who talk about penrose's ideas13:22
kanzurelots of people talk about all sorts of things out there13:22
entelechioswhy wouldn't it be open to discussion13:22
entelechiosi still don't hear any well presented reasons13:22
kanzuresignla/noise13:22
kanzure*signal13:22
kanzuresignal/noise is the lazy answer13:23
entelechiosand so you're the CRM114 discriminator here?13:23
kanzurei don't know if that analogy fits, i'm dropping a bomb on a city and there's a recall code that consists of quantum theories about consciousness?13:24
entelechiosit works by only listening up when certain tones are sent to it and shutting out everything else to the peril of the world13:25
kanzureso i'm destroying the planet because i don't believe that quantum consciousness is something worth subjecting the channel to?13:25
kanzurei get this a lot. next you're going to tell me i'm a bioterrorist, right?13:25
entelechiosno, i won't tell you you're a bioterrorist13:26
kanzurealright13:26
entelechiosthat's kind of a funny thing to call someone13:26
entelechioskanzure, you're a cybersex god13:27
entelechiosand a social media guru13:28
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kanzurehttp://www.jove.com/video/50630/a-computer-assisted-multi-electrode-patch-clamp-system13:58
kanzure"A biophysically detailed model of neocortical local field potentials predicts the critical role of active membrane currents" http://hearingbrain.org/docs/ReimannEtAl_LFPmodel.pdf13:59
kanzure"We simulated the LFP in a model of the rodent neocortical column composed of >12,000 reconstructed, multicompartmental, and spiking cortical layer 4 and 5 pyramidal neurons and basket cells, including five million dendritic and somatic compartments with voltage- and ion-dependent currents, realistic connectivity, and probabilistic AMPA, NMDA, and GABA synapses. We found that, depending on a number of factors, the LFP reflects local and ...13:59
kanzure... cross-layer processing. Active currents dominate the generation of LFPs, not synaptic ones. Spike-related currents impact the LFP not only at higher frequencies but below 50 Hz."13:59
kanzurefenn: here's one you might like,14:08
kanzure"New insights into the classification and nomenclature of cortical GABAergic interneurons" http://real.mtak.hu/6584/7/MainText.pdf14:08
jrayhawk"05:12 < mosasaur> Although I had a hard time accepting that early humans might have been meat eaters." there's a big switchover from C3 to C4 ecology about 1.5 million years ago, about the same time eoliths and marks of tool-based butchering start showing up on animal bones.14:13
jrayhawkOf note, humans do not manufacture mk4 and need to get it through C4-consuming intermediary animals.14:14
nshwhat's all this jibberjabber14:15
nshmk4? C4?14:15
nsh.g c3 c4 ecology14:15
yoleauxhttp://dare.uva.nl/document/19623314:15
nsh.t14:15
yoleauxFri, 25 Apr 2014 21:15:48 UTC14:15
jrayhawk(also of note is that humans do not manufacture DHA and need to get it through aquatic animals, but you already seem sold on that)14:17
jrayhawknsh: mk4 is menaquinone with 4 isoprene units14:20
jrayhawkit is an animal form distinct from the plant-based menaquinone with 7 isoprene units14:21
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jrayhawkoh, he's not even in here14:25
jrayhawkpoops14:25
gradstudentbotYeah, but his project was so easy.14:28
nshthanks14:32
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xentrac17:15 < jrayhawk> (also of note is that humans do not manufacture DHA and need to get it through aquatic animals, but you already seem sold on that)15:10
xentracdoes that mean humans can't live on land-based food alone?15:10
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FourFireI've read a story of someone who ate only chicken nuggets and chips for 17 years15:12
jrayhawkxentrac: not very well; along with being used to construct eicosanoids, DHA is used for building every part of a neuron.15:21
jrayhawkCognitive decline is the usual result.15:21
xentracwhat's the possible connection between C₃→C₄ and butchering?15:23
jrayhawkDifferent food chains. A transition from direct frugivorous diets to grassland carnivorous diets.15:24
jrayhawk.g c3 c4 isotope human diet15:25
yoleauxhttp://luna.cas.usf.edu/~rtykot/10%20Tykot.pdf15:25
jrayhawk.g selective butchering million years15:26
yoleauxhttp://www.nature.com/scitable/knowledge/library/evidence-for-meat-eating-by-early-humans-10387427315:26
jrayhawk(Vegetarians like to ignore the butchering part and claim we switched over to eating grass 1.5 million years ago, which is pretty funny)15:27
jrayhawkoh, my timeline is completely wrong. 3.5 Ma? dayum.15:29
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xentracwell, we do eat a lot of grass today15:34
xentracI mean, wheat, rye, millet, sorghum, corn, and so on are grasses15:34
xentracalso rice15:34
xentrachttp://www.health.harvard.edu/fhg/updates/Why-not-flaxseed-oil.shtml claims that you can get adequate DHA from flax (which is also a grass)15:36
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xentracto be more specific, it claims that humans do manufacture DHA from ALA, and by consuming a lot of ALA you can get enough DHA15:37
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xentraclike 10×.  so to equal one of the 2g pills at <http://www.amazon.com/Omega-Fish-Pills-Counts-Health-Supporting/dp/B00CAZAU62>15:46
xentracwhich contain 600mg DHA15:46
xentracyou need to eat 6g of ALA, which is about 25g of flax seed15:46
xentracwhich is close to what flaxseed vendors recommend you eat per day15:47
xentracit's also a lot smallr than the amount of fish (say, 170g) you need to eat to get the same amount of DHA15:47
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Phykshi15:50
kanzurehello15:50
xentracflaxseed is kind of an outlier though when it comes to ω-3 contents.  but it seems like even things like olives, chia seeds, hemp seeds, or soybeans might be in the same ballpark as fish when it comes to DHA?15:51
Phykskanzure: actually, I'm writing some biblio management script for myself and I need some functionnalities similar to paperbot15:51
kanzurezotero has a browser extension15:52
PhyksI know about it, but it doesn't fit my needs15:52
PhyksI just want some kind of extended paperbot on my local computer :15:52
Phyks:)15:52
kanzurecan you describe the input and the output?15:53
Phyksdo you know mpc ?15:53
kanzure.g mpc15:53
yoleauxhttp://www.moving-picture.com/15:53
kanzuremovie studio?15:53
Phyksmy idea for the (basic) interface is a bit the same : script import PDF_FILE to import a file, script download LINK to download it, and search it the same way as the mpc search engine15:54
Phyks(mpc = music player client, a client for mpd)15:54
kanzurempc search engine does local search?15:54
Phyksit does search in a MPD music library15:54
Phyks(but I just mention it because you can do something like mpc search artist SOME_ARTIST)15:55
xentracI'm fasting today so I should stop talking about food.  it's making me hungry.15:55
Phykseach time I import / dl a pdf, I fetch metadata from DOI / ISBN search in pdf fulltext and query on servers. I maintain a bibtex index for all papers15:56
Phyksand now, I'm working about the "download" part and paperbot may fit my needs, to include it as some kind of module15:56
kanzureyou might also be interested in https://github.com/kanzure/pdfparanoia15:56
kanzurei don't have a pdf2doi tool yet15:56
Phyksyep, I saw this one, I'm really interested in pdfpranoia15:56
Phykskanzure: it's poorly written but here are the necessary functions for PDF2DOI : https://github.com/Phyks/BiblioManager/blob/master/main.py15:57
Phyks(check findDOI and doi2Bib functions)15:57
kanzuredoes it use pdftotext15:57
Phyksyes15:57
Phyksbest way I could find15:57
kanzurehmm15:57
Phyksway faster than pdf modules in python15:57
Phyks(and much more reliable)15:58
kanzurehow do you know which doi corresponds to the paper? sometimes doi numbers appear in the bibliography inside the paper.15:58
Phyksjust a test :15:58
Phykspaperbot: http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.112.02530215:58
Phykspaperbot: http://journals.aps.org/prl/pdf/10.1103/PhysRevLett.112.02530215:59
kanzuresometimes paperbot is slow15:59
Phyksok15:59
gradstudentbotYeah, I'm a 4th year. No wait, I'm a 6th year.15:59
Phykskanzure: I take the first matched DOI15:59
PhyksI tested it in my papers, and it works quite nice16:00
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Phyksit's a rewrite of this code http://en.dogeno.us/2010/02/release-a-python-script-for-organizing-scientific-papers-pyrenamepdf-py/, which was working well according to this post16:00
gradstudentbotFriends don't let friends go to super school.16:00
kanzurehm16:01
Phykskanzure: so, both links should be ok for paperbot, right ?16:01
paperbotRuntimeError: maximum recursion depth exceeded in cmp (file "/usr/lib/python2.7/_weakrefset.py", line 73, in __contains__)16:01
paperbotRuntimeError: maximum recursion depth exceeded in cmp (file "/usr/lib/python2.7/_weakrefset.py", line 73, in __contains__)16:01
PhyksI think for my code, I will then drop zotero-translation-server and just use the second one16:01
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kanzuredelinquentme: you left halfway through the conversation, http://gnusha.org/logs/2014-04-25.log17:19
delinquentmekanzure, how are you handling async w phantom.js17:19
delinquentmeyeah had new packages installed --- needed reboot17:19
kanzureoften with this: http://npmjs.org/package/q17:19
kanzurethis is very useful for using node modules in phantomjs: https://www.npmjs.org/package/phantomjsify17:20
jrayhawkxentrac: No, conversion efficiency is below measurement margine of error in nonpregnant women, and pregnant women are a weird special case because they're releasing it in huge amounts from stores.17:20
jrayhawks/margine/margin/17:20
jrayhawks/nonpregnant women/non-(pregnant women)17:21
delinquentmehave a working example of node.js and q that I can copy ?17:22
delinquentmelogin form preferable17:22
kanzureno, i use q for the main phantomjs context17:25
kanzureand sometimes i use substack's mitm html injection thing so that i can load up browserify stuff straight into each page before it even loads in phantomjs17:25
kanzuregah what was the thing called17:25
kanzureschooldeath.. something.17:26
kanzurehttps://github.com/substack/schoolbus17:26
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xentracjrayhawk: what you are saying seems not to be a mainstream medical or biological point of view17:39
xentracI'm obviously not familiar enough with the field to make a stronger statement than that17:40
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jrayhawkI don't care what the mainstream medical or biological point of view is, I care what the actual papers say.18:03
xentracthe mainstream medical and biological points of view represent a weighting of the conflicting information in the actual papers for credibility and consistency18:07
xentracmuch like what you're doing18:07
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xentracbut I notice you didn't link to any actual papers18:08
jrayhawkWheel of epistemology, turn turn turn, tell us the lesson that we should learn...18:09
jrayhawk.g Human synthesis docosahexaenoic acid18:09
yoleauxhttp://www.ncbi.nlm.nih.gov/pubmed/865608118:09
jrayhawkwell, i guess that makes sense18:10
jrayhawkwe do actually have pretty robust delongase and desaturase pathways18:10
jrayhawker, saturase18:10
xentracyou mean elongase?18:10
jrayhawkNo, that's 24->2218:10
jrayhawk.g human delongase desaturase docosahexaenoic acid18:11
yoleauxNo results found.18:11
jrayhawki hate you, yoleaux18:11
jrayhawker, shit18:11
jrayhawk.g human elongase desaturase docosahexaenoic acid18:11
yoleauxhttp://en.wikipedia.org/wiki/Fatty_acid_desaturase18:11
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jrayhawkgod, fine, I'll go actually use a real search engine18:12
xentrachaha18:12
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jrayhawkhttp://www.jlr.org/content/42/8/1257.full.pdf18:18
jrayhawkhttp://ajcn.nutrition.org/content/77/3/565.full.pdf18:19
kanzureld48 theme is "beneath the surface"18:19
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jrayhawkthe pawlosky paper is cool because it's doing deuterium labeling18:20
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jrayhawkthe end number was a conversion rate of 0.000000001318:21
jrayhawkhttp://scholar.google.com/scholar?q=ala+dha+supplementation you see concordant results from supplementation studies18:22
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jrayhawkyou may want to give http://members.shaw.ca/jeanaltemeyer/drbob/TheAuthoritarians.pdf a read (just try to ignore the terrible political narrative) to understand how consensus gets built18:23
jrayhawkand similarly think about the implications of http://en.wikipedia.org/wiki/Standard_of_care18:24
jrayhawkand eight years of senseless psychological violence (residency) as a hazing ritual18:25
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ebowdenhttp://wyss.harvard.edu/viewpressrelease/150/cloaked-dna-nanodevices-survive-pilot-mission18:38
kanzurei highly encourage you to not read press releases18:38
ebowdenThey embellish things?18:50
kanzurethey often don't contain any actionable information18:50
ebowdenDo they contain information that will allow you to find actionable information?18:51
kanzureoften no, it's usually dead ends that would require millions of dollars of licensing fees that, frankly, i don't want to spend18:55
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cpopellebowden: actionable meaning can you find the source paper? yes. actionable meaning can you do anything from finding the source paper? no18:55
ebowdenAh, right.18:55
ebowdenSo, the source paper won't be of much use?18:56
ebowden(Well, to you.)18:56
cpopellit probably won't help you reproduce it, which is Kanzure's goal18:56
cpopellhttp://pubs.acs.org/doi/abs/10.1021/nn5011914 e.g. this is the actual paper18:57
cpopell(as far as I can tell)18:58
ebowdenSo, kanzure wouldn't be able to reproduce the particles?18:58
ebowdenThanks.18:58
cpopellI have an interest in general tracking what's happening, which has caused Kanzure no end of irritation because he doesn't want more Kurzweil-esque useless demagogues18:59
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cpopellbrb.18:59
ebowdenKurzweil-esque?19:00
ebowdenOh, ok.19:00
ebowdenpaperbot: http://pubs.acs.org/doi/abs/10.1021/nn501191419:03
kanzurehttps://news.ycombinator.com/item?id=7648237 "I wonder, if this is the way a majority of big businesses do things, how come we don't see more leaks of entire codebases? It'd be trivial to put something up on TPB and just share all the code, but I don't see things like that happening. I also doubt that every single employee with access to the code has the moral standards not to do this. There must be something else keeping them from doing it."19:03
kanzure18:58 < ebowden> So, kanzure wouldn't be able to reproduce the particles?19:03
kanzuresigh19:03
paperbotXMLSyntaxError: None (file "/home/bryan/code/paperbot/phenny/modules/scihub.py", line 51, in _go)19:03
kanzurenobody said that19:03
kanzureoh, i guess cpopell did, but he didn't say it directly19:04
gradstudentbotWho the hell stole my pipette?19:04
kanzurejournalists always get everything wrong in every single field of study19:04
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kanzurenews is probably the worst source of information you can pick19:04
kanzureand it's not even the "good" type of worst19:04
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ebowdenKanzure, do you have any reason to re-produce those particles at the moment?19:11
kanzurewhy are you asking?19:11
kanzurei don't understand19:11
ebowden"Virus-Inspired Membrane Encapsulation of DNA Nanostructures To Achieve In Vivo Stability"19:12
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gradstudentbotIs there free food at that seminar?19:14
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kanzuretorrents deploying code at facebook https://www.facebook.com/publications/514128035341603/20:34
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fenncan someone load this url in their browser and tell me about how long it takes until you see the text of the message? https://groups.google.com/forum/#!msg/d3-js/z6yNV6sz58M/XOX-KuTBcC8J21:22
kanzure13 seconds21:23
fennokay good21:23
fennam i correct in thinking that 13 seconds is too long?21:24
kanzureyep21:24
kanzurethey've been screwing up google groups for years, it's not very surprising21:25
fennif you click on this thing, does it animate? http://bl.ocks.org/mbostock/406342321:25
kanzureno21:25
fennhuh. i guess it broke in the last few days21:25
kanzureif you click "size" or "count" then it animates.21:26
fennright21:26
fennyou used to be able to zoom in on each pie wedge21:26
fenndamn, i thought i had fixed chrome's memory hogging but then it crashed21:28
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kanzurefenn: do you have a collection of 3d models of dinosaurs by any chance21:35
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fennwow this sunburst demo looks completely different on an ipad21:38
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fennoh nm it's a different gist21:39
fennsigh there goes chrome again21:40
fennthis is the zooming/animating sunburst chart http://bl.ocks.org/mbostock/434837321:50
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jrayhawkfenn: the text is pretty much instant for me21:59
kanzureare you rendering without js?22:00
jrayhawkyes22:00
jrayhawki am a little impressed google knows to interpret the anchor22:00
jrayhawki didn't even know that got sent22:00
kanzureanchor changed a long time ago to correspond to <div> element ids22:00
jrayhawker, yeah22:01
jrayhawkthat22:01
kanzureso what is going to happen to all the usenet data22:01
jrayhawkwhat's that called if not anchor, now?22:01
kanzurehashcrap22:01
kanzure"the twitter thing" :(22:01
jrayhawkoctothorpe22:02
fennyou can link to any div?22:02
fenni mean, is that html or just some GWT thing22:02
kanzuretry it22:03
kanzurenot gwt22:03
jrayhawk"fragment identifier"22:03
kanzureuser agent implementation thing22:03
jrayhawkhttp://en.wikipedia.org/wiki/Fragment_identifier22:03
kanzurecongrats jrayhawk you've now learned a web thing22:03
kanzuredo you feel good? because you shouldn't.22:03
jrayhawk"its processing is exclusively client-side with no participation from the web server"22:03
jrayhawkI learned google is doing the impossible22:04
fenncan you link to any id?22:04
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jrayhawkeh, i am not too resentful to learn URI things22:04
kanzurehttp://diyhpl.us/wiki/diybio/groups#atlanta22:05
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fennhow big is the usenet archive?22:07
kanzuresmall enough for henry spencer to have tape backups of its entirety22:08
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jrayhawkokay, apparently #! is special...?22:09
kanzureusually that's some stupid client-side js single-page-app scam22:09
kanzurewhere the fragment is used to inform the javascript on the page which actual content to request from the server22:10
jrayhawkhttps://developers.google.com/webmasters/ajax-crawling/22:10
fennhttps://archive.org/details/usenet22:10
kanzureangularjs and backbone do this out of the box iirc for their routing22:10
jrayhawkhttps://developers.google.com/webmasters/ajax-crawling/docs/specification22:10
kanzure"This historical collection of Usenet spans more than 30 years and was given to us by a generous donor" probably henry spencer22:11
jrayhawkso apparently it is a google-specific extension to RFC3986 specifically to work around the fact that AJAX is horrible22:11
jrayhawki guess i am down with my browser supporting that22:11
kanzureit's also so that they don't have to write custom scraper code for each single-page javascript app22:12
jrayhawkYeah.22:12
fenn"hash fragments have the advantage that in and of themselves, they do not incur an HTTP request and thus no round-trip from the browser to the server and back."  makes sense22:12
jrayhawkI consider that a subset of AJAX being horrible.22:12
fenni wish they wouldn't call it a "hash fragment" though22:12
fennwhy can't the crawler just do all this JS stuff on its own22:14
jrayhawkthis feels more like I've learned an anti-web thing. an outside specification undoing damage incurred by the w3.22:14
kanzurefenn: halting problem stuff, resource utilization stuff22:15
fennare you saying AJAX is a w3 thing?22:15
jrayhawkDynamic pages are a w3 thing.22:16
gradstudentbotCan I defend with just one aim done?22:17
jrayhawkfenn: aside from resource problems, many crawlers aren't that smart and crawling resource trees in highly dynamic environments much more likely to be infinite in scope22:18
jrayhawks/much/is/22:18
jrayhawker, is much22:18
fenni'm not sure how rfc3986 solves that22:18
fenner, not rfc.. whatever the google ajax-crawling thing is called22:19
jrayhawkgraceful (specifically, controlled) degradation22:20
gradstudentbotI'll be at the microscope.22:20
fennthis is a transformation of the ajax scheme but it still has an infinite number of possible urls22:21
jrayhawkyeah, with cgi that's always possible22:21
fennso the crawler still has to decide which urls to load22:21
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fenni am still reading what the difference between an URI a URL and a URN is22:22
kanzuredeciding which urls to load wasn't the problem this was trying to solve22:22
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* fenn reverts to web 1.022:26
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kanzurewasn't there a debtorrent thing? what was it called22:33
gradstudentbotHey, let's write a paper about that.22:33
fenndebtorrent22:34
fennis there a "legal upright citizen's torrent tracker search engine" like the pirate bay, but for stuff like usenet archives or wikipedia dumps?22:35
fenni guess it's archive.org22:38
fennthere's no comments or useful descriptions of anything though22:38
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fenni wonder why kiwix is still not in ubuntu22:51
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xmjwhats that?23:38
--- Log closed Sat Apr 26 00:00:51 2014

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