2015-12-29.log

--- Log opened Tue Dec 29 00:00:50 2015
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kanzure"yo! something is up with http://link.springer.com/  all materials >10 years old are free for downloading"05:34
kanzure308 springer links in the logs05:35
kanzurehow many of these are old enough?05:35
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maakukanzure: i believe tulip on #bitcoin-wizards is mass harvesting those files06:06
maakumight want to coordinate with him if you want something more then CS books06:06
maaku(i asked him to get physical science and engineering books, but not sure if he'll follow up on that)06:07
pompolicdoes anyone know if this is a limited-time offer?06:20
pompolichaving all these books as open access, i mean06:20
Aurelius_Workpompolic : I'll be on vacation for twelve days starting thursday evening--we should do some WF06:21
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FAMASthis user recommends the utilization of the paq and bulkzip algorithms for file archiving at maximum possible compression and recommends them being utilized to store the channel logs06:25
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playfuldinosaurWhats your favorite biohacking book?06:52
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kanzurehere are some things http://diyhpl.us/~bryan/papers2/springerwat/07:27
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kanzurecan one of you baboons let me know when you have a copy of that? i don't want to leave those up.07:33
doclkanzure: methinks you need to ban that spammer who keeps going on about compressing the channel logs.07:34
playfuldinosaurI'll download them later07:36
playfuldinosaurSome at least07:36
playfuldinosaurVery interesting thanks for sharing07:36
eudoxiai'm downloading some know because why not07:37
eudoxianow* god dammit07:37
kanzurei thought you are on dial up07:37
eudoxiano07:37
playfuldinosaurIm at work :/07:39
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playfuldinosaurOn my phone07:39
eudoxiai'm keeping the brain stem surgery textbook just in case07:42
playfuldinosaurAnyone have any more directories or fav books?07:43
playfuldinosaurThis is cool07:43
kanzurei'm not sure how you would be aware of this, but my message was not a reply to your request07:47
kanzuresee http://gnusha.org/logs/2015-12-29.log just before you arrived07:47
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AdrianGso we have a christmas present from springer?07:48
kanzureessentially07:49
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playfuldinosaurNice07:59
playfuldinosaurWell my question still stand lol07:59
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kanzurehmm i wonder if ranchers are already using mutagenesis for their breeding programs. my guess is probably no.08:10
kanzure(one of the books was about "statistical methods for genetic improvement of livestock")08:11
kanzurethere is very little about dna sequencing in this book, heh08:11
kanzureah they do eventually mention embryo transfer, self-fertilization, chimeras, polyploidy, gene transfer.08:13
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playfuldinosaurWhat about books and directories?08:28
maakuplayfuldinosaur: read the logs08:32
playfuldinosaurLol yes i forgot about that08:33
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kanzureunfortunately "methods in molecular biology" is not available in this glitch >:(09:26
kanzurewhich is practically the only useful book series they have. hmph.09:29
kanzurehttp://www.springer.com/series/765109:31
kanzureor these http://www.springerprotocols.com/cdp/view/Series?issn=0893-2336&sortBy=VOLUME&submit=Go09:34
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atomical|node: why do you keep messaging me?09:45
atomicalis |node a bot?09:45
|nodeHi!09:46
atomicalhi09:47
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kanzureooh "Modern Techniques in Neuroscience Research"09:52
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kanzureooh, "Organtransplantation in Rats and Mice - Microsurgical Techniques and Immunological Principles"10:01
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playfuldinosaurGuys question, if you talked to a noob biohackee what projects do you recommend him/her to start with?11:19
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xentraca noob biohackee?  Like somebody who's a guinea pig in somebody else's CRISPR experiment for the first time?  I'd recommend starting with calling the police11:29
kanzureno it's like a hackie sac.11:31
playfuldinosaurLolol11:33
playfuldinosaurDef like a hackie sack11:33
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playfuldinosaurSo no?12:29
kanzureyour first project should be acquiring lab skills- go to a community college molecular biology lab class, cut the lab manual book into small chunks and then proceed to feast.12:31
playfuldinosaurDid that part12:41
playfuldinosaurUsed to work for a lab growing toxoplasma and HFF cells12:42
kanzurecan toxo secrete shit while in its dormant phase?12:42
kanzurei want to select toxo strains for positive nootropic effect12:43
playfuldinosaurI dont know for sure but my guess is no. My lab was trying to focus on inserting dna so we could force it out of its dormant stage so we could target it with drugs. My guess is that if drugs cant reach it while its dormant there is little to no cell signals coming in and out of it12:45
playfuldinosaurWhat nootropic effect?12:47
kanzureany measurable nootropic effect12:48
playfuldinosaurToxo is small enough to fit in a human cell so you could potentially hack it so it works as a pseudo organelle12:48
kanzuree.g. existing brain lesions caused by toxo sometimes cause cognitive augmentation or benefit12:48
playfuldinosaurI wasnt aware of that12:48
kanzure(and sometimes defecit... but those strains should not be selected)12:48
AdrianGkanzure: did you download everything you wanted from springer yet12:48
kanzureAdrianG: years ago12:49
kanzurei would like "methods in molecular biology" but that's not available during this glitch12:49
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AdrianGkanzure: i thought you had access before?12:50
AdrianGrecall asking you for some paper some time ago12:50
kanzurethere's new stuff in "methods in molecular biology" that i don't have12:50
playfuldinosaurI think its easier to do a project with gut bacteria than eith toxo because of the possibility of getting toxoplasmosis12:51
playfuldinosaurOr with some other organism for that matter12:51
playfuldinosaurIm interested now, kanzure have you done any home diy cell bio experiments?12:51
AdrianGtoxo studies are going to be really difficult to get approved by ethics boards.12:52
kanzureAdrianG: why are you such a troll12:52
playfuldinosaurYeah also funding is an issue and the reason i no longer work there haha12:52
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kanzuretoxo stuff does get past the ethics review boards, duh12:53
kanzureand who cares if it didn't? ethics review boards have been known to mistakes. i don't care.12:53
kanzure*to make mistakes12:53
kanzureplayfuldinosaur: i'm really unsure why you are asking about newbie projects if you have actual lab experience.12:54
CaptHindsightdoes Josiah from http://www.the-odin.com/ spend any time in here?12:55
playfuldinosaurHaha well i want to learn about diy projects. Im a noob to those12:55
kanzureCaptHindsight: he spends more time on https://groups.google.com/group/diybio12:56
CaptHindsightthanks12:56
kanzureyup12:56
AdrianGkanzure: how am i trolling? infecting humans with toxo isnt going to pass oversight12:56
playfuldinosaurWoah i didnt know that was a thing the google groups12:56
kanzure1) bringing up ethics review boards is totally irrelevant to any of the conversation12:56
kanzure2) nobody said anything about humans. why are you doing this to me? just stop.12:57
AdrianGi was responding to playfuldinosaur about gut bacteria vs toxo12:57
AdrianGthats why12:57
kanzure3) it's wrong to assume that ethics review boards have a zero failure rate, and it's wrong to assume they don't have false positives or false negatives.12:57
kanzuregut bacteria does not mean human-only12:58
kanzuresigh12:58
playfuldinosaurGut bacteria has smaller plasmid too12:59
playfuldinosaurEasier12:59
playfuldinosaurLess ethics more science :)12:59
playfuldinosaurKanzure that should be our motto "less ethics more science"13:00
kanzureplayfuldinosaur: if you are unfamiliar with https://groups.google.com/group/diybio then perhaps take a look at http://diyhpl.us/wiki/diybio/faq13:00
AdrianGi really should be more verbose, otherwise i am always presumed to be trolling.13:00
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playfuldinosaurOk i gotta really look at that wiki there is literally so much in theee13:01
AdrianGhuman-only, why? the only primates we can test on these days are humans. translating neuro research from mice/rats to higher primates is a lot more prone to failures.13:01
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kanzurebecause validation of directed evolution for nootropics can be achieved in non-primates; brain testing works for non-primates.13:03
kanzurevalidation and refutation is cheaper to achieve at that level compared to being wrong and wasting time infecting yourself or others13:03
AdrianGdirected evolution? I thought you were going to use toxo as more precise drugs, something like optogenetics.13:05
kanzurei said selection13:05
AdrianGi guess for directed evolution, that would require validation first.13:05
kanzurei think selection and directed evolution are very similar13:05
AdrianGsince we dont already have it shown it works otherwise13:05
kanzureoptogenetics also requires validation -_-13:05
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kanzuredirected evolution has been shown to work for trivial problems13:05
AdrianGkanzure: for selection/evolution - maybe13:05
AdrianGwe have shown it works in principle.13:05
kanzurewe have shown it works in practice for trivial problems.13:06
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kanzurewhere trivial is some combination of evolutionary landscape, protein sequence/fold possibility space, mutation rate, and good/functional measurement for selection13:06
AdrianGwe will end up doing species specific work at some point, sooner or later13:06
playfuldinosaurOr at least accurate (ish) computer simulations of them13:10
xentracby "directed evolution" do you mean things like toy poodles, bloodhounds, and pit bulls?13:12
kanzurewell the topic was toxoplasmosis :-) so... sort of?13:12
kanzurei guess poodles are sorta infectious13:12
xentracoh, you mean directed evolution of toxoplasmosis has been shown to work?13:13
xentracI hadn't heard that13:13
kanzuredirected evolution of all kinds of microbes has been shown to work13:13
kanzure... for trivial problems.13:13
xentracI see --- I didn't know you were talking about all kinds of microbes.13:14
kanzure(impossible behavior is still impossible, of course. ubt if there's something possible, and nearby in the evolutionary landscape, and you supply enough mutation, and you have good selection mechanisms and measurements, you can reach those mutations and alleles)13:14
kanzure*but if there's13:14
kanzureoh and also if you are willing to bruteforce it, and the total time until bruteforcing success happens to be small, and it's achievable by bruteforcing... that's another way.13:15
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playfuldinosaurI dont disagree with you kanzure, but specifically for toxo is harder to acheive directed evolution because of the amount of trasncription factors that toxo has. Other micros have way less.13:16
kanzureare the transcription factors known? if we get cheap dna synthesis ( http://diyhpl.us/wiki/dna/synthesis/notes/ ) it would probably be easier to just remove as many transcription factors as possible, until the thing barely works.13:17
AdrianGkanzure: what are the current costs to engineer a bacteria to spec?13:18
AdrianGsay i want to insert a certain sequence and make it produce a certain polymer or whatever13:18
AdrianGis this at garaga-diy costs yet?13:18
AdrianGsay we already know what genetic sequence needs to be inserted.13:19
kanzureif you are willing to outsource dna synthesis, and you are willing to use something like plasmid insertion (transformation), then yes that can be done fairly cheap13:20
kanzureor, if not outsourcing dna synthesis, then at least outsourcing your acquisition of the plasmid13:20
playfuldinosaurThe number would be close to 80 and we are still discovering more. Look at the AP2 proteins they are the best ones to look at because they are also plant transcription factors that dont appear in humans13:21
playfuldinosaurSo lets say you want to meddle with toxo while its inside a host you can tackle the AP2 because animals wont have them. So in a way its the safest bet.13:24
playfuldinosaurIm gonna disconnect and go back with my verified nick idk why im using this one. Ill be cautious13:33
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CaptHindsightAdrianG: how long are your polymers?13:43
CaptHindsightpolymers/sequences13:44
AdrianGCaptHindsight: it was just an example13:45
AdrianGcould be monomers.13:45
AdrianGidk, say i want to manufacture glycerin on the cheap13:46
kanzure"Antibody myostatin blockade has just completed phase 2 clinical trials"13:46
kanzurewas that recent13:46
AdrianGphase 2?13:46
CaptHindsightAdrianG: depends on what you want to synthesize, your examples are from one extreme to the other13:49
AdrianGCaptHindsight: i was interested in costs of custom bacteria, thats all13:49
AdrianGpolymers probably would be a lot more difficult.13:49
CaptHindsighthttps://azcobiotech.com/reagents-for-oligonucleotide-synthesis/liquid-reagents/  is down right now13:50
CaptHindsightbut the reagents were ~$1k/g13:50
AdrianGyou dont need a gram, as far as i know13:50
kanzureyes but most people are just going to order a plasmid from someone else, or whatever13:51
AdrianGthis stuff is done in micrograms if not lower13:51
CaptHindsightso if you use a femtoliter printhead it's not much13:51
AdrianGkanzure: sure. but at some point, it might become table-top.13:51
AdrianGi think a widely distributed development effort will require much lower costs.13:51
kanzureyes but your question wasn't about fucking tabletop, it was about current costs >:(13:51
kanzurethat's shifting the goal posts on me, man13:51
AdrianGkanzure: garage-diy13:51
kanzurethat does not mean tabletop13:52
AdrianGit doesnt, because i know tabletop at the moment is unachievable13:52
AdrianGim not shifting anything. i just asked an open ended question, geez.13:52
CaptHindsightthey advertise ~25 cents per base pair, but I hear that it's not the actual cost13:55
CaptHindsighthttp://www.genscript.com/gene_synthesis.html13:56
AdrianGheh.13:57
AdrianGsame price as biobasic.13:57
AdrianGhttps://store.biobasic.com/gene-synthesis/13:57
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CaptHindsighttheir sweet spot seems to be 500-3000bp  http://www.generalbiosystems.com/index.php?c=content&a=show&id=28541&gclid=CI_hs5WKgsoCFQEIaQodNSYKoA14:08
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FourFire"less ethics; more science" is now my oneliner for passively agressively blowing off people trolling me about transhumanism14:32
kanzurethey aren't actually interested in whether it's ethical14:32
kanzurewtf is so ethical about people living in miserable aged bodies, about death and destruction and despair. fuck the ethicists.14:33
FourFire^14:35
CaptHindsightare they the same people that complain about for-profit health care?14:36
kanzuregood question. maybe?14:37
xentracFourFire: I understand why you might be tempted to do that, because it will make your life more comfortable, but it will damage the cause14:37
kanzurethere are good ethical reasons to do transhumanist thngs. but it's wrong to force everyone to be constantly explaining why.14:38
xentracsure14:38
xentracyou could respond with violence14:38
kanzurethat's an idea14:39
xentrac"but isn't that unethical?" *punch*14:39
xentracbut responding by claiming merely not to claim about ethics will give your opponents ammunition and will undermine any later ethical claims you might try to make14:40
xentracI mean obviously just responding with violence is bad too, but not as bad14:40
kanzurepeople who complain about ethics are just testing your social skills14:40
xentracsome of them, but not others14:41
xentracbut the point mostly isn't to convince the people who are complaining14:41
kanzurerecognizing valid ethical reasoning is a good social skill to have.14:41
xentracit's to convince, or avoid deconvincing, whoever else is present or might hear the story repeated later14:41
kanzurewere you around when we had that person who wanted to convert the galaxy into computronium14:42
xentracno14:42
xentracwhy only the galaxy?14:42
kanzurehe was impatient :-)14:43
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atomicalreading about keto is getting a bit tiring16:36
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AdrianGwhy?16:40
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atomica__because these fat fucks are going to die of heart disease16:43
xentracI finally found the "99-line topology optimization code" article: http://www.topopt.dtu.dk/files/matlab.pdf16:43
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xentrac1999: "other approaches based on genetic algorithms or other semi-random approaches require thousands of function evaluations even for small number of elements and must be considered impractical"16:46
kanzurei don't think that was true in 1999! what about gpu stuff.16:46
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xentracgpu stuff was not practical in 199916:48
xentracit's certainly true that gradient descent will converge to an answer in a lot less computation than genetic algorithms!16:48
kanzurewhy was gpu stuff not practical in 1999? surely you could smash triangles into each other or something?16:49
xentracGPUs were still fairly fixed-function, and even for the things that you *could* compute on them, it was really slow to get the data anywhere besides on your monitor16:51
xentracthey were optimized for moving data from the computer into the graphics card, not vice versa16:53
xentracactually the time to move data between memories is still a problem for GPGPU today16:53
xentracbut not the overwhelming problem it was then16:53
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paskygeforce 256 was the first commodity gpu that'd even let you smash triangles17:51
kanzurewasn't it the pythagorean theorem that said that all problems can be decomposed into a set of triangle collision conjectures? :p17:53
paskythen again, according to wikipedia, geforce 256 was only faster at this than the lowest-end cpus17:57
xentrac"let's use GPUs" and "let's use Java" were two of the obviously terrible ideas I was seeing on the Beowulf mailing list occasionally around that time18:04
xentracfast forward to 2004 and they were no longer terrible18:05
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xentrachttp://www.kurzweilai.net/superintelligence-fears-promises-and-potentials covers a lot of the current debate about ethics and science18:12
xentracGoertzel thinks Yudkowsky and Bostrom are overstating AGI risk18:12
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xentractouching on diybio and MNT18:13
kanzurexentrac: goertzel's long standing opinion is http://multiverseaccordingtoben.blogspot.com/2010/10/singularity-institutes-scary-idea-and.html18:13
kanzureah, he links to that. efficient.18:15
kanzure"Arguably, such an “AGI Nanny” could manage the transition to and through a Singularity much better than human beings or purely human institutions. An AGI Nanny would in a sense be a kind of “police state” — but if policing of dangerous technologies were combined with compassionate ethics, abolition of human-scale material scarcity, and coherent rational pursuit of a positive Singularity, one would have something very different ...18:16
kanzure... from the “police states” that have existed in human history."18:16
kanzurethis is still objectionable.18:16
kanzure"Bostrom and Yudkowsky, from what I have seen, are ethical and peaceable individuals who genuinely want the best for all mankind, as well as wanting to see amazing transhuman possibilities come about in a safe and well-managed way. However, their tendency toward elitism does not strike everyone as benign in its potential consequences."18:16
kanzureaccusing them of elitism is a terrible attempt at refuting their arguments -_-18:16
kanzurenice to see precautionary vs proactionary principle mentioned...18:17
xentracit seems very much in agreement18:17
xentracI haven't reached the "AGI Nanny" quote18:18
kanzurethere's a lot of fluff in this article, basically goertzel's usual nonsense18:18
kanzurewhich is entirely skippable18:18
xentrac'coherent rational pursuit of a positive Singularity' is a reasonably good description of the Great Leap Forward and also of Marxism in general18:18
xentracbut they still had police states18:19
kanzurei mentioned a refutation of police states and ai nanny moratoriums and such earlier this month18:19
kanzurehttp://gnusha.org/logs/2015-12-12.log18:19
xentrachow can you refute a policy proposal?18:20
kanzureby showing the policy is nonsense, bad, or misinformed, or that it doesn't achieve its goals, or that it is incapable of achieving its goals18:20
kanzure.... duh?18:20
kanzurei guess that's why maaku mentioned militias (in the same file)18:21
xentrachmm, I think those would calculate as refutations for propositions that a policy was sensible, good, informed, or effective18:22
xentracbut not for the policy itself18:22
kanzureoh also there was some anti-yudkowsky stuff at 22:37 here http://gnusha.org/logs/2015-12-11.log18:22
xentracI mean people might still support the policy for reasons other than its stated goals, for example18:24
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kanzureexample from another context plz?18:25
xentracI don't think the PNAC folks believed there were nuclear weapons in Iraq; they had their own reasons for wanting to invade18:28
xentracso persuading them that there were no nuclear weapons wouldn't persuade them not to invade18:28
xentracyou can get more meta still: often political delegates vote for policies they disagree with when they don't believe those policies have a chance of passing, in order to cheaply curry favor with the folks who support those policies18:32
kanzurebtcdrak: wtf do you have a telepathic link to xentrac?18:32
kanzurei guess btcdrak's message came after xentrac's. weird.18:33
* btcdrak grins18:34
xentracI have telepathic links with everyone18:36
kanzurehe was asking about fbi excuses to invade iraq18:36
kanzurefor WMD reasons18:36
kanzurebasically a minure after your mention18:36
kanzure*minute18:37
CautiousNarwhalhi guys again18:50
CautiousNarwhaltelepaths?18:50
xentracI transmit my thoughts through electrical impulses to dozens, sometimes thousands of people around the world18:54
xentracisn't that telepathy?18:54
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kanzurexentrac: mind control over motion? that's impossible http://diyhpl.us/~bryan/lolwhat.txt (this was an email i received a few years ago)18:57
kanzurecrispr/cas9 guide https://www.addgene.org/CRISPR/guide/18:57
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kanzure"editas" is crispr startup, apparently. raised $43M. is going through FDA stuff at the moment.19:04
kanzurehttp://www.editasmedicine.com/19:04
kanzurehahah the stock photos.... one of them is a stock photo of george church :-).19:04
kanzurehttp://www.editasmedicine.com/documents/Editas%20-%20Human%20Gene%20Editing%20Comment%20-%20Final.pdf19:05
kanzurehttp://www.editasmedicine.com/publications.php19:06
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kanzure.title http://earthobservatory.nasa.gov/IOTD/view.php?id=8718920:11
yoleauxSeafloor Features Are Revealed by the Gravity Field : Image of the Day20:11
kanzure"Mountains and other seafloor features have a lot of mass, so they exert a gravitational pull on the water above and around them; essentially, seamounts pull more water toward their center of mass. This causes water to pile up in small but measurable bumps on the sea surface."20:13
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kanzure"New global marine gravity model from CryoSat-2 and Jason-1 reveals buried tectonic structure" http://www.sciencemag.org/content/346/6205/6520:14
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kanzure.title https://news.ycombinator.com/item?id=1081027121:58
yoleauxAll Springer Textbooks More Than 10 Years Old Available for Free Legal Download | Hacker News21:58
FourFirexentrac, fine, I'll maintain my current strategy of covertly converting bright people, while pretending to want to research "healthcare" to everyone else22:06
maakucame here to see goertzel's article discussed, was not disappointed22:18
kanzurei find your lack of faith disturbing22:20
maakuAGI is a bizarro world right now where the loudest voices are neo-fascist, and the only (relatively) sane voice is a bit of a cookoo hippy22:20
kanzure:-)22:20
kanzureyes it's unfortunate that there isn't a generally correct well-reasoned anti-eliezer anti-yudkowsky thing....... some of the fearmongering is just dumb (if you imagine infinitely powerful adversaries, yes it's okay to not imagine human survival). and the usual refutation ("BUT HE IS ARROGANT") is also stupid.22:22
justanot1eruserAGI is full of neo-fascists?22:46
justanot1eruserWe are talking about AI right? Not something else?22:47
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CaptHindsightwhy all these narcissist cheese haters? jeez I can't wait until the 2020's23:18
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